Wall clock time and date at job start Tue Mar 31 2020 13:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47343 * 2 1 4 4 C 1.53002 * 109.46456 * 120.00138 * 2 1 3 5 5 C 1.53000 * 109.47156 * 67.45729 * 4 2 1 6 6 C 1.52990 * 110.00219 * 53.01341 * 5 4 2 7 7 C 1.54339 * 109.98745 * 291.97202 * 5 4 2 8 8 C 1.55152 * 103.01772 * 218.66874 * 7 5 4 9 9 C 1.54905 * 101.58529 * 35.31061 * 8 7 5 10 10 N 1.47021 * 109.87977 * 174.11163 * 5 4 2 11 11 S 1.65599 * 125.64963 * 298.38837 * 10 5 4 12 12 O 1.42101 * 104.28352 * 153.64631 * 11 10 5 13 13 O 1.42104 * 104.27450 * 25.78975 * 11 10 5 14 14 C 1.81400 * 104.44959 * 269.72152 * 11 10 5 15 15 C 1.53005 * 109.47149 * 179.97438 * 14 11 10 16 16 C 1.53003 * 109.46925 * 179.97438 * 15 14 11 17 17 C 1.50703 * 109.46657 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00434 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99482 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00207 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99675 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47319 * 89.99530 * 21 19 17 23 23 H 1.48492 * 109.47054 * 209.99855 * 21 19 17 24 24 H 1.48498 * 109.47128 * 329.99871 * 21 19 17 25 25 H 1.08998 * 109.47652 * 167.41720 * 1 2 3 26 26 H 1.08997 * 109.47504 * 287.42336 * 1 2 3 27 27 H 1.09009 * 109.46923 * 47.41633 * 1 2 3 28 28 H 1.08995 * 109.47006 * 239.99665 * 2 1 3 29 29 H 1.08997 * 109.46923 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46845 * 299.99812 * 3 2 1 31 31 H 1.09004 * 109.46578 * 59.99702 * 3 2 1 32 32 H 1.08994 * 109.47373 * 307.44855 * 4 2 1 33 33 H 1.09000 * 109.46442 * 187.45071 * 4 2 1 34 34 H 1.09002 * 109.47402 * 181.09656 * 6 5 4 35 35 H 1.09000 * 109.47054 * 301.09473 * 6 5 4 36 36 H 1.08999 * 109.47091 * 61.09488 * 6 5 4 37 37 H 1.09000 * 110.84605 * 100.20309 * 7 5 4 38 38 H 1.09006 * 110.66702 * 337.05322 * 7 5 4 39 39 H 1.08997 * 111.00528 * 277.23274 * 8 7 5 40 40 H 1.09005 * 111.03892 * 153.39793 * 8 7 5 41 41 H 1.09001 * 110.37108 * 204.14724 * 9 8 7 42 42 H 1.09000 * 110.37020 * 81.82998 * 9 8 7 43 43 H 1.08999 * 109.47314 * 59.99670 * 14 11 10 44 44 H 1.08998 * 109.46880 * 299.99694 * 14 11 10 45 45 H 1.08999 * 109.46956 * 59.99850 * 15 14 11 46 46 H 1.08998 * 109.47306 * 299.99832 * 15 14 11 47 47 H 1.08999 * 109.47243 * 60.00250 * 16 15 14 48 48 H 1.08998 * 109.47175 * 300.00137 * 16 15 14 49 49 H 0.96997 * 120.00239 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7213 1.2493 5 6 1.6884 -2.2077 1.1591 6 6 2.1922 -2.7852 -0.1650 7 6 0.1600 -2.3956 1.2631 8 6 0.0235 -3.6802 2.1225 9 6 1.2190 -3.5315 3.0962 10 7 2.2948 -2.9339 2.2844 11 16 3.9173 -3.0548 2.5930 12 8 3.9928 -3.2596 3.9971 13 8 4.4759 -1.8952 1.9907 14 6 4.4373 -4.5475 1.7030 15 6 5.9367 -4.7697 1.9122 16 6 6.3751 -6.0291 1.1621 17 6 7.8517 -6.2483 1.3687 18 1 8.4204 -5.5586 1.9747 19 6 8.4766 -7.3294 0.7840 20 7 7.7840 -8.1695 0.0464 21 14 10.3071 -7.6007 1.0394 22 1 10.5192 -8.4445 2.2429 23 1 10.8771 -8.2826 -0.1501 24 1 10.9800 -6.2905 1.2287 25 1 -0.3634 -1.0029 -0.2239 26 1 -0.3634 0.3077 0.9805 27 1 -0.3633 0.6955 -0.7567 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.5718 -0.2902 2.1342 33 1 3.1217 -0.6074 1.3184 34 1 1.9204 -3.8388 -0.2287 35 1 1.7386 -2.2422 -0.9942 36 1 3.2765 -2.6860 -0.2154 37 1 -0.2807 -2.5427 0.2771 38 1 -0.2990 -1.5444 1.7661 39 1 0.1288 -4.5743 1.5081 40 1 -0.9225 -3.6900 2.6640 41 1 1.5254 -4.5075 3.4727 42 1 0.9557 -2.8711 3.9223 43 1 4.2334 -4.4259 0.6392 44 1 3.8858 -5.4076 2.0828 45 1 6.1410 -4.8912 2.9760 46 1 6.4880 -3.9096 1.5323 47 1 6.1707 -5.9081 0.0983 48 1 5.8238 -6.8890 1.5425 49 1 8.2235 -8.9302 -0.3646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451716705.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:59 Heat of formation + Delta-G solvation = -93.906087 kcal Electronic energy + Delta-G solvation = -26428.841480 eV Core-core repulsion = 22903.293637 eV Total energy + Delta-G solvation = -3525.547842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.00083 -36.95760 -35.93046 -35.71633 -34.67080 -32.19636 -31.57134 -31.09973 -27.88934 -27.46925 -26.88389 -25.51514 -23.72796 -22.08970 -21.04651 -20.45230 -19.86318 -18.45596 -17.11534 -16.66147 -16.32975 -15.77560 -15.43458 -15.20714 -14.61210 -14.48495 -14.31576 -14.10067 -13.73602 -13.52744 -13.32232 -12.85154 -12.62379 -12.53319 -12.42461 -12.28204 -12.16632 -11.93664 -11.86727 -11.75430 -11.70332 -11.58736 -11.36396 -11.23900 -10.92353 -10.88953 -10.87275 -10.78739 -10.62036 -10.46674 -10.42290 -10.24393 -9.94853 -9.48743 -9.21552 -8.86165 -8.40920 -6.05828 -4.08869 0.45080 2.76906 3.30375 3.36412 3.40641 4.01564 4.13778 4.28111 4.42574 4.52643 4.58573 4.78828 4.87936 4.88903 5.00298 5.13297 5.16707 5.19248 5.23687 5.30605 5.35146 5.46688 5.47927 5.51653 5.56328 5.62659 5.66382 5.70075 5.75843 5.81378 5.88219 5.91399 5.95033 5.98843 6.05717 6.14249 6.20496 6.25789 6.35437 6.45222 6.47837 6.50803 6.87275 7.56842 7.66815 7.92204 8.32778 8.97326 9.55795 11.05398 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.003201 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.446854 B = 8745.002013 C = 9045.346225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.144 4.144 5 C 0.183 3.817 6 C -0.179 4.179 7 C -0.121 4.121 8 C -0.135 4.135 9 C 0.123 3.877 10 N -1.008 6.008 11 S 2.610 3.390 12 O -0.961 6.961 13 O -0.954 6.954 14 C -0.611 4.611 15 C -0.105 4.105 16 C 0.032 3.968 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.047 13.683 0.250 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.182 4.182 5 C 0.096 3.904 6 C -0.238 4.238 7 C -0.160 4.160 8 C -0.174 4.174 9 C -0.003 4.003 10 N -0.844 5.844 11 S 2.709 3.291 12 O -0.951 6.951 13 O -0.944 6.944 14 C -0.743 4.743 15 C -0.145 4.145 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.450 14.135 0.731 24.055 hybrid contribution 0.825 -0.893 -0.317 1.256 sum -18.625 13.243 0.414 22.857 Atomic orbital electron populations 1.22329 0.95730 1.02341 1.01411 1.21169 0.95537 0.96243 0.98581 1.21835 1.01446 0.95896 1.01267 1.22478 1.04892 0.93092 0.97760 1.20630 0.92990 0.91319 0.85445 1.22525 1.02450 1.01809 0.96971 1.23087 0.94219 0.98040 1.00625 1.22854 0.97933 0.98620 0.98020 1.21919 0.86859 0.97977 0.93521 1.58872 1.22614 1.65681 1.37227 1.05100 0.71677 0.77266 0.75093 1.93558 1.84902 1.87452 1.29211 1.93499 1.76582 1.45300 1.79031 1.30683 1.09113 1.20026 1.14436 1.21500 0.87398 1.03343 1.02237 1.19053 0.96189 0.90231 0.95194 1.21260 0.93940 1.10099 1.31166 0.92373 1.25020 0.98405 0.95904 0.95035 1.69955 1.36027 1.14492 1.32958 0.86554 0.85152 0.78433 0.77679 1.20561 1.21161 1.19720 0.91363 0.92780 0.93291 0.90495 0.92363 0.92950 0.92973 0.91831 0.87797 0.91515 0.90309 0.91699 0.89806 0.90134 0.90563 0.90228 0.90752 0.91437 0.85407 0.85601 0.91720 0.91610 0.96126 0.96165 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 7.72 37.16 0.29 -0.85 16 2 C -0.10 -0.86 2.60 -90.62 -0.24 -1.10 16 3 C -0.15 -1.31 9.15 37.16 0.34 -0.97 16 4 C -0.14 -1.59 3.98 -26.73 -0.11 -1.69 16 5 C 0.18 1.89 0.63 -130.84 -0.08 1.81 16 6 C -0.18 -1.81 7.49 37.15 0.28 -1.53 16 7 C -0.12 -0.92 3.98 -24.89 -0.10 -1.01 16 8 C -0.14 -1.00 7.09 -24.59 -0.17 -1.17 16 9 C 0.12 1.22 6.89 -2.53 -0.02 1.20 16 10 N -1.01 -12.23 3.04 -97.71 -0.30 -12.52 16 11 S 2.61 41.03 5.12 -107.50 -0.55 40.48 16 12 O -0.96 -17.85 17.61 -57.54 -1.01 -18.87 16 13 O -0.95 -16.68 14.57 -57.54 -0.84 -17.52 16 14 C -0.61 -9.90 6.18 37.16 0.23 -9.67 16 15 C -0.11 -2.19 5.16 -26.73 -0.14 -2.33 16 16 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 17 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 21 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.07 0.42 4.83 -51.93 -0.25 0.17 16 26 H 0.05 0.38 7.32 -51.93 -0.38 0.00 16 27 H 0.05 0.32 8.09 -51.92 -0.42 -0.10 16 28 H 0.08 0.68 5.91 -51.93 -0.31 0.38 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.69 7.91 -51.93 -0.41 0.28 16 33 H 0.10 1.44 5.33 -51.93 -0.28 1.16 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.65 6.15 -51.93 -0.32 0.33 16 36 H 0.06 0.75 6.78 -51.93 -0.35 0.40 16 37 H 0.08 0.52 6.23 -51.93 -0.32 0.20 16 38 H 0.08 0.57 6.18 -51.93 -0.32 0.24 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.13 1.88 6.89 -51.92 -0.36 1.52 16 44 H 0.13 1.84 8.14 -51.92 -0.42 1.42 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -33.57 378.38 -10.30 -43.88 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.76 Total: -1.53 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: -0.27 Total: -30.35 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.44 Total: -38.47 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.85 Total: -36.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 41.03 SS G_CDS: -0.55 Total: 40.48 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.57 -10.30 -43.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451716705.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.030 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds