Wall clock time and date at job start Tue Mar 31 2020 13:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47343 * 2 1 4 4 C 1.53002 * 109.46456 * 120.00138 * 2 1 3 5 5 C 1.53000 * 109.47156 * 67.45729 * 4 2 1 6 6 C 1.52990 * 110.00219 * 53.01341 * 5 4 2 7 7 C 1.54339 * 109.98745 * 291.97202 * 5 4 2 8 8 C 1.55152 * 103.01772 * 218.66874 * 7 5 4 9 9 C 1.54905 * 101.58529 * 35.31061 * 8 7 5 10 10 N 1.47021 * 109.87977 * 174.11163 * 5 4 2 11 11 S 1.65599 * 125.64963 * 298.38837 * 10 5 4 12 12 O 1.42101 * 104.28352 * 153.64631 * 11 10 5 13 13 O 1.42104 * 104.27450 * 25.78975 * 11 10 5 14 14 C 1.81400 * 104.44959 * 269.72152 * 11 10 5 15 15 C 1.53005 * 109.47149 * 179.97438 * 14 11 10 16 16 C 1.53003 * 109.46925 * 179.97438 * 15 14 11 17 17 C 1.50703 * 109.46657 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00434 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99482 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00207 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99675 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47319 * 89.99530 * 21 19 17 23 23 H 1.48492 * 109.47054 * 209.99855 * 21 19 17 24 24 H 1.48498 * 109.47128 * 329.99871 * 21 19 17 25 25 H 1.08998 * 109.47652 * 167.41720 * 1 2 3 26 26 H 1.08997 * 109.47504 * 287.42336 * 1 2 3 27 27 H 1.09009 * 109.46923 * 47.41633 * 1 2 3 28 28 H 1.08995 * 109.47006 * 239.99665 * 2 1 3 29 29 H 1.08997 * 109.46923 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46845 * 299.99812 * 3 2 1 31 31 H 1.09004 * 109.46578 * 59.99702 * 3 2 1 32 32 H 1.08994 * 109.47373 * 307.44855 * 4 2 1 33 33 H 1.09000 * 109.46442 * 187.45071 * 4 2 1 34 34 H 1.09002 * 109.47402 * 181.09656 * 6 5 4 35 35 H 1.09000 * 109.47054 * 301.09473 * 6 5 4 36 36 H 1.08999 * 109.47091 * 61.09488 * 6 5 4 37 37 H 1.09000 * 110.84605 * 100.20309 * 7 5 4 38 38 H 1.09006 * 110.66702 * 337.05322 * 7 5 4 39 39 H 1.08997 * 111.00528 * 277.23274 * 8 7 5 40 40 H 1.09005 * 111.03892 * 153.39793 * 8 7 5 41 41 H 1.09001 * 110.37108 * 204.14724 * 9 8 7 42 42 H 1.09000 * 110.37020 * 81.82998 * 9 8 7 43 43 H 1.08999 * 109.47314 * 59.99670 * 14 11 10 44 44 H 1.08998 * 109.46880 * 299.99694 * 14 11 10 45 45 H 1.08999 * 109.46956 * 59.99850 * 15 14 11 46 46 H 1.08998 * 109.47306 * 299.99832 * 15 14 11 47 47 H 1.08999 * 109.47243 * 60.00250 * 16 15 14 48 48 H 1.08998 * 109.47175 * 300.00137 * 16 15 14 49 49 H 0.96997 * 120.00239 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7213 1.2493 5 6 1.6884 -2.2077 1.1591 6 6 2.1922 -2.7852 -0.1650 7 6 0.1600 -2.3956 1.2631 8 6 0.0235 -3.6802 2.1225 9 6 1.2190 -3.5315 3.0962 10 7 2.2948 -2.9339 2.2844 11 16 3.9173 -3.0548 2.5930 12 8 3.9928 -3.2596 3.9971 13 8 4.4759 -1.8952 1.9907 14 6 4.4373 -4.5475 1.7030 15 6 5.9367 -4.7697 1.9122 16 6 6.3751 -6.0291 1.1621 17 6 7.8517 -6.2483 1.3687 18 1 8.4204 -5.5586 1.9747 19 6 8.4766 -7.3294 0.7840 20 7 7.7840 -8.1695 0.0464 21 14 10.3071 -7.6007 1.0394 22 1 10.5192 -8.4445 2.2429 23 1 10.8771 -8.2826 -0.1501 24 1 10.9800 -6.2905 1.2287 25 1 -0.3634 -1.0029 -0.2239 26 1 -0.3634 0.3077 0.9805 27 1 -0.3633 0.6955 -0.7567 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.5718 -0.2902 2.1342 33 1 3.1217 -0.6074 1.3184 34 1 1.9204 -3.8388 -0.2287 35 1 1.7386 -2.2422 -0.9942 36 1 3.2765 -2.6860 -0.2154 37 1 -0.2807 -2.5427 0.2771 38 1 -0.2990 -1.5444 1.7661 39 1 0.1288 -4.5743 1.5081 40 1 -0.9225 -3.6900 2.6640 41 1 1.5254 -4.5075 3.4727 42 1 0.9557 -2.8711 3.9223 43 1 4.2334 -4.4259 0.6392 44 1 3.8858 -5.4076 2.0828 45 1 6.1410 -4.8912 2.9760 46 1 6.4880 -3.9096 1.5323 47 1 6.1707 -5.9081 0.0983 48 1 5.8238 -6.8890 1.5425 49 1 8.2235 -8.9302 -0.3646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451716705.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:58 Heat of formation + Delta-G solvation = -114.722086 kcal Electronic energy + Delta-G solvation = -26429.744129 eV Core-core repulsion = 22903.293637 eV Total energy + Delta-G solvation = -3526.450492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.77734 -38.28896 -37.09907 -36.67269 -36.52074 -34.20965 -32.29997 -31.91593 -29.73341 -28.10155 -27.74015 -26.25073 -25.63600 -23.06460 -22.22410 -21.64873 -20.71027 -19.66622 -18.64339 -18.05679 -17.46654 -17.20937 -16.57560 -16.37612 -16.05654 -15.81383 -15.40023 -14.96043 -14.52937 -14.49764 -14.32840 -14.10179 -14.04652 -13.66481 -13.55851 -13.33500 -13.22899 -13.14930 -13.07483 -13.01714 -12.78758 -12.75605 -12.67663 -12.57863 -12.37071 -12.18187 -12.10852 -11.80590 -11.57532 -11.51349 -11.41287 -11.29036 -11.17978 -11.11171 -11.01695 -10.60087 -9.90076 -8.24988 -6.36448 -0.82250 1.38585 1.39508 1.51002 1.64816 2.38014 2.75203 3.02345 3.08336 3.48877 3.72074 3.73115 3.82126 3.88792 4.12221 4.16581 4.21109 4.29841 4.32960 4.49381 4.50757 4.58118 4.59535 4.73144 4.81415 4.84902 4.87172 4.88621 4.98650 5.00333 5.02324 5.05716 5.11440 5.14942 5.19282 5.24851 5.28790 5.36800 5.41212 5.47178 5.53995 5.57755 5.59032 5.64309 5.69554 5.75839 6.16490 6.78486 7.32920 8.86569 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.003201 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.446854 B = 8745.002013 C = 9045.346225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.145 4.145 5 C 0.176 3.824 6 C -0.185 4.185 7 C -0.115 4.115 8 C -0.126 4.126 9 C 0.107 3.893 10 N -1.004 6.004 11 S 2.630 3.370 12 O -0.991 6.991 13 O -0.975 6.975 14 C -0.611 4.611 15 C -0.105 4.105 16 C 0.034 3.966 17 C -0.555 4.555 18 H 0.059 0.941 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.964 3.036 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.265 1.265 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.003 0.997 48 H 0.002 0.998 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.864 13.985 -0.099 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.184 4.184 5 C 0.089 3.911 6 C -0.243 4.243 7 C -0.154 4.154 8 C -0.165 4.165 9 C -0.017 4.017 10 N -0.843 5.843 11 S 2.728 3.272 12 O -0.982 6.982 13 O -0.965 6.965 14 C -0.741 4.741 15 C -0.144 4.144 16 C -0.004 4.004 17 C -0.593 4.593 18 H 0.077 0.923 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.189 1.189 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.021 0.979 48 H 0.021 0.979 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.257 14.437 0.387 25.699 hybrid contribution 1.334 -0.949 -0.217 1.652 sum -19.923 13.488 0.170 24.060 Atomic orbital electron populations 1.22298 0.93713 1.03445 1.01915 1.21166 0.97173 0.95701 0.97354 1.21855 1.00376 0.96363 1.02014 1.22453 1.02823 0.94202 0.98933 1.20895 0.95031 0.90419 0.84708 1.22605 1.01211 1.02801 0.97673 1.23126 0.91579 0.98575 1.02078 1.22866 0.97551 0.98649 0.97411 1.22249 0.87206 0.97997 0.94249 1.58597 1.21498 1.65833 1.38332 1.04210 0.72572 0.76362 0.74014 1.93512 1.85960 1.87677 1.31039 1.93484 1.77972 1.45912 1.79152 1.30652 1.06044 1.21608 1.15824 1.21307 0.90708 1.01002 1.01372 1.18934 0.95090 0.91805 0.94603 1.21726 0.95553 1.10534 1.31461 0.92252 1.25939 1.03440 0.95525 0.94560 1.70065 1.38090 1.15011 1.33684 0.85467 0.79117 0.78658 0.77977 1.19642 1.20361 1.18928 0.90023 0.92503 0.92518 0.90502 0.94121 0.91574 0.92839 0.91918 0.91116 0.90571 0.88289 0.93935 0.87628 0.89158 0.90046 0.87814 0.90641 0.91126 0.84032 0.84070 0.91849 0.91671 0.97856 0.97920 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 7.72 71.98 0.56 -1.19 16 2 C -0.10 -1.56 2.60 -10.79 -0.03 -1.59 16 3 C -0.15 -2.54 9.15 71.98 0.66 -1.88 16 4 C -0.15 -3.12 3.98 30.60 0.12 -3.00 16 5 C 0.18 3.35 0.63 3.96 0.00 3.35 16 6 C -0.18 -3.46 7.49 71.98 0.54 -2.92 16 7 C -0.12 -1.34 3.98 31.79 0.13 -1.22 16 8 C -0.13 -1.43 7.09 31.98 0.23 -1.20 16 9 C 0.11 1.95 6.89 86.85 0.60 2.55 16 10 N -1.00 -23.48 3.04 -463.04 -1.41 -24.89 16 11 S 2.63 83.76 5.12 -56.49 -0.29 83.47 16 12 O -0.99 -37.36 17.61 -127.65 -2.25 -39.61 16 13 O -0.97 -35.18 14.57 -127.65 -1.86 -37.04 16 14 C -0.61 -20.00 6.18 71.98 0.44 -19.55 16 15 C -0.10 -4.47 5.16 30.60 0.16 -4.32 16 16 C 0.03 1.79 4.97 29.85 0.15 1.94 16 17 C -0.55 -32.15 9.11 25.60 0.23 -31.92 16 18 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 19 C 0.00 0.22 5.46 84.66 0.46 0.68 16 20 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 21 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 25 H 0.08 0.68 4.83 -2.39 -0.01 0.67 16 26 H 0.06 0.62 7.32 -2.39 -0.02 0.60 16 27 H 0.06 0.57 8.09 -2.38 -0.02 0.55 16 28 H 0.08 1.25 5.91 -2.39 -0.01 1.24 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 1.31 7.91 -2.39 -0.02 1.29 16 33 H 0.07 2.02 5.33 -2.39 -0.01 2.01 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.41 6.15 -2.39 -0.01 1.40 16 36 H 0.04 0.98 6.78 -2.39 -0.02 0.97 16 37 H 0.11 0.83 6.23 -2.39 -0.01 0.82 16 38 H 0.09 0.92 6.18 -2.38 -0.01 0.91 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.14 4.19 6.89 -2.39 -0.02 4.18 16 44 H 0.14 4.12 8.14 -2.39 -0.02 4.10 16 45 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 48 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -73.61 378.38 1.66 -71.95 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.90 Total: 15.54 kcal Atomic # 6 Polarization: -64.51 SS G_CDS: 4.25 Total: -60.26 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -1.12 Total: -80.67 kcal Atomic # 8 Polarization: -72.54 SS G_CDS: -4.11 Total: -76.65 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 83.76 SS G_CDS: -0.29 Total: 83.47 kcal Total: -73.61 1.66 -71.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451716705.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.769 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds