Wall clock time and date at job start Tue Mar 31 2020 13:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47557 * 2 1 4 4 C 1.53006 * 109.46874 * 120.00320 * 2 1 3 5 5 C 1.53000 * 109.46995 * 172.44774 * 4 2 1 6 6 C 1.53001 * 109.87647 * 307.17531 * 5 4 2 7 7 C 1.54327 * 110.01238 * 68.27311 * 5 4 2 8 8 C 1.55155 * 102.94148 * 141.67795 * 7 5 4 9 9 C 1.54901 * 101.58552 * 324.50142 * 8 7 5 10 10 N 1.47028 * 109.88118 * 186.15732 * 5 4 2 11 11 S 1.65602 * 125.64464 * 61.46473 * 10 5 4 12 12 O 1.42100 * 104.27917 * 26.07590 * 11 10 5 13 13 O 1.42106 * 104.27301 * 153.92610 * 11 10 5 14 14 C 1.81391 * 104.44905 * 269.99930 * 11 10 5 15 15 C 1.53008 * 109.46846 * 180.02562 * 14 11 10 16 16 C 1.53004 * 109.46821 * 180.02562 * 15 14 11 17 17 C 1.50704 * 109.46631 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99599 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00332 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99967 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47178 * 90.00129 * 21 19 17 23 23 H 1.48495 * 109.47195 * 210.00192 * 21 19 17 24 24 H 1.48500 * 109.47010 * 330.00209 * 21 19 17 25 25 H 1.09000 * 109.47095 * 300.00114 * 1 2 3 26 26 H 1.09004 * 109.46972 * 59.99798 * 1 2 3 27 27 H 1.09000 * 109.47442 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47095 * 239.99886 * 2 1 3 29 29 H 1.08999 * 109.47236 * 313.32996 * 3 2 1 30 30 H 1.08999 * 109.46749 * 73.32863 * 3 2 1 31 31 H 1.08999 * 109.47196 * 193.32465 * 3 2 1 32 32 H 1.08995 * 109.46974 * 52.44491 * 4 2 1 33 33 H 1.08996 * 109.46764 * 292.44603 * 4 2 1 34 34 H 1.09007 * 109.46848 * 298.98627 * 6 5 4 35 35 H 1.09001 * 109.46863 * 58.98157 * 6 5 4 36 36 H 1.08994 * 109.47333 * 178.98500 * 6 5 4 37 37 H 1.08999 * 110.72047 * 260.04342 * 7 5 4 38 38 H 1.09005 * 110.71688 * 23.14320 * 7 5 4 39 39 H 1.09000 * 111.00550 * 206.42019 * 8 7 5 40 40 H 1.09008 * 110.99885 * 82.57712 * 8 7 5 41 41 H 1.09003 * 110.36813 * 278.17254 * 9 8 7 42 42 H 1.08998 * 110.37120 * 155.84805 * 9 8 7 43 43 H 1.08997 * 109.47258 * 299.99857 * 14 11 10 44 44 H 1.09004 * 109.47347 * 60.00681 * 14 11 10 45 45 H 1.08997 * 109.46747 * 299.99768 * 15 14 11 46 46 H 1.08994 * 109.47413 * 60.00174 * 15 14 11 47 47 H 1.08997 * 109.47115 * 299.99351 * 16 15 14 48 48 H 1.08994 * 109.47141 * 59.99816 * 16 15 14 49 49 H 0.97001 * 120.00244 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 3.5581 -0.8876 1.1581 6 6 3.9299 -1.5522 -0.1690 7 6 4.2477 0.4887 1.2671 8 6 5.5081 0.1795 2.1175 9 6 4.9704 -0.9000 3.0895 10 7 4.0396 -1.7071 2.2799 11 16 3.6074 -3.2766 2.5837 12 8 3.2485 -3.7942 1.3099 13 8 4.7085 -3.8095 3.3070 14 6 2.1474 -3.1454 3.6520 15 6 1.6477 -4.5472 4.0072 16 6 0.4158 -4.4365 4.9078 17 6 -0.0767 -5.8173 5.2572 18 1 0.4378 -6.6868 4.8754 19 6 -1.1834 -5.9705 6.0650 20 7 -1.8096 -4.9117 6.5303 21 14 -1.7944 -7.6820 6.4975 22 1 -1.1300 -8.1448 7.7424 23 1 -3.2643 -7.6450 6.7053 24 1 -1.4745 -8.6166 5.3888 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.4964 2.0201 -0.7475 30 1 1.8832 1.8832 0.9845 31 1 3.1040 1.4516 -0.2368 32 1 1.5705 -1.7025 1.3193 33 1 1.7911 -0.1355 2.1340 34 1 3.4710 -2.5395 -0.2220 35 1 3.5700 -0.9394 -0.9955 36 1 5.0134 -1.6510 -0.2349 37 1 4.5289 0.8583 0.2810 38 1 3.6019 1.2043 1.7760 39 1 5.8395 1.0644 2.6608 40 1 6.3104 -0.2188 1.4962 41 1 4.4426 -0.4328 3.9210 42 1 5.7878 -1.5196 3.4582 43 1 2.4120 -2.6122 4.5651 44 1 1.3616 -2.6011 3.1281 45 1 1.3832 -5.0808 3.0943 46 1 2.4336 -5.0912 4.5312 47 1 0.6800 -3.9028 5.8208 48 1 -0.3699 -3.8927 4.3835 49 1 -2.5880 -5.0195 7.0990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451716707.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:04 Heat of formation + Delta-G solvation = -93.963638 kcal Electronic energy + Delta-G solvation = -26563.292450 eV Core-core repulsion = 23037.742112 eV Total energy + Delta-G solvation = -3525.550338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.00539 -36.95201 -35.96685 -35.71545 -34.65959 -32.18693 -31.52231 -31.10231 -27.86274 -27.45745 -26.89393 -25.50509 -23.72258 -22.10711 -21.04984 -20.55982 -19.76853 -18.44983 -17.09428 -16.68340 -16.17774 -15.86044 -15.57492 -15.26431 -14.53693 -14.47216 -14.33217 -14.07294 -13.70943 -13.55278 -13.27381 -12.91202 -12.58250 -12.56120 -12.34679 -12.27424 -12.07324 -11.93884 -11.82640 -11.76426 -11.69300 -11.57632 -11.29065 -11.16112 -10.97022 -10.91812 -10.86743 -10.79140 -10.65918 -10.45013 -10.40443 -10.34509 -9.94402 -9.47396 -9.20869 -8.86590 -8.40594 -6.05476 -4.08553 0.45352 2.76854 3.30569 3.36613 3.40817 4.02598 4.14709 4.26856 4.42738 4.50348 4.60016 4.74329 4.83264 4.88611 5.05777 5.11203 5.18342 5.20240 5.23787 5.30975 5.42075 5.48553 5.49206 5.51720 5.58086 5.63114 5.67684 5.71909 5.78707 5.81743 5.87311 5.90879 5.93733 6.01450 6.09880 6.18341 6.19979 6.25111 6.28001 6.45910 6.50835 6.51460 6.87541 7.57170 7.67156 7.92488 8.33059 8.97598 9.56150 11.05727 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.003615 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.302958 B = 7742.886934 C = 8660.415033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.160 4.160 4 C -0.135 4.135 5 C 0.183 3.817 6 C -0.182 4.182 7 C -0.121 4.121 8 C -0.131 4.131 9 C 0.115 3.885 10 N -1.008 6.008 11 S 2.610 3.390 12 O -0.953 6.953 13 O -0.961 6.961 14 C -0.612 4.612 15 C -0.105 4.105 16 C 0.032 3.968 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.737 16.107 -12.739 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.217 4.217 4 C -0.174 4.174 5 C 0.096 3.904 6 C -0.241 4.241 7 C -0.160 4.160 8 C -0.170 4.170 9 C -0.011 4.011 10 N -0.844 5.844 11 S 2.709 3.291 12 O -0.944 6.944 13 O -0.952 6.952 14 C -0.743 4.743 15 C -0.144 4.144 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.038 0.962 48 H 0.039 0.961 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.047 15.303 -12.945 23.385 hybrid contribution -0.989 -0.454 0.811 1.357 sum 11.058 14.849 -12.135 22.136 Atomic orbital electron populations 1.21874 0.95016 1.02227 1.01660 1.21142 0.95854 0.96204 0.98142 1.22298 1.01847 0.95898 1.01668 1.22285 0.94432 1.01611 0.99081 1.20638 0.93044 0.90535 0.86198 1.22664 1.02099 1.03720 0.95574 1.23084 0.96470 0.95756 1.00683 1.22789 0.97828 0.98406 0.97967 1.22004 0.92428 0.92985 0.93648 1.58855 1.57787 1.31028 1.36706 1.05069 0.76720 0.71729 0.75583 1.93506 1.85408 1.76896 1.38580 1.93550 1.50141 1.76206 1.75282 1.30703 1.19173 1.08921 1.15551 1.21497 1.01860 0.89162 1.01929 1.19053 0.90338 0.97505 0.93775 1.21256 1.12297 0.92515 1.30383 0.92381 1.25013 0.96530 0.96926 0.95853 1.69958 1.20421 1.28765 1.34284 0.86560 0.77897 0.84489 0.78902 1.20560 1.21159 1.19724 0.92628 0.92758 0.92313 0.90247 0.93108 0.92579 0.91418 0.91402 0.90797 0.88557 0.91439 0.92595 0.89876 0.90032 0.90202 0.90792 0.91624 0.89967 0.85559 0.85431 0.91628 0.91706 0.96160 0.96129 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.15 37.16 0.34 -1.06 16 2 C -0.09 -0.84 2.59 -90.62 -0.23 -1.08 16 3 C -0.16 -1.14 7.73 37.16 0.29 -0.85 16 4 C -0.14 -1.42 3.82 -26.73 -0.10 -1.52 16 5 C 0.18 1.91 0.65 -130.84 -0.09 1.82 16 6 C -0.18 -2.00 7.76 37.16 0.29 -1.72 16 7 C -0.12 -0.92 4.01 -24.90 -0.10 -1.02 16 8 C -0.13 -0.99 7.08 -24.59 -0.17 -1.17 16 9 C 0.11 1.15 7.07 -2.53 -0.02 1.13 16 10 N -1.01 -12.31 3.04 -97.71 -0.30 -12.61 16 11 S 2.61 41.26 5.05 -107.50 -0.54 40.72 16 12 O -0.95 -16.78 14.70 -57.54 -0.85 -17.63 16 13 O -0.96 -17.86 17.28 -57.54 -0.99 -18.86 16 14 C -0.61 -9.98 6.13 37.16 0.23 -9.76 16 15 C -0.11 -2.19 5.16 -26.73 -0.14 -2.33 16 16 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 17 C -0.53 -14.97 9.11 -34.44 -0.31 -15.28 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 21 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.71 5.89 -51.93 -0.31 0.40 16 29 H 0.05 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 7.28 -51.93 -0.38 0.01 16 31 H 0.07 0.42 4.90 -51.93 -0.25 0.16 16 32 H 0.07 0.82 6.24 -51.93 -0.32 0.50 16 33 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 34 H 0.10 1.32 5.48 -51.93 -0.28 1.03 16 35 H 0.07 0.60 6.14 -51.93 -0.32 0.28 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.53 6.22 -51.93 -0.32 0.21 16 38 H 0.08 0.56 6.20 -51.93 -0.32 0.24 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.87 7.67 -51.93 -0.40 0.47 16 43 H 0.13 1.87 8.14 -51.93 -0.42 1.45 16 44 H 0.13 1.90 6.61 -51.92 -0.34 1.55 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -33.56 377.26 -10.23 -43.79 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.70 Total: -1.23 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: -0.26 Total: -30.59 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.44 Total: -38.57 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.84 Total: -36.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 41.26 SS G_CDS: -0.54 Total: 40.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.56 -10.23 -43.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451716707.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.174 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds