Wall clock time and date at job start Tue Mar 31 2020 13:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47557 * 2 1 4 4 C 1.53006 * 109.46874 * 120.00320 * 2 1 3 5 5 C 1.53000 * 109.46995 * 172.44774 * 4 2 1 6 6 C 1.53001 * 109.87647 * 307.17531 * 5 4 2 7 7 C 1.54327 * 110.01238 * 68.27311 * 5 4 2 8 8 C 1.55155 * 102.94148 * 141.67795 * 7 5 4 9 9 C 1.54901 * 101.58552 * 324.50142 * 8 7 5 10 10 N 1.47028 * 109.88118 * 186.15732 * 5 4 2 11 11 S 1.65602 * 125.64464 * 61.46473 * 10 5 4 12 12 O 1.42100 * 104.27917 * 26.07590 * 11 10 5 13 13 O 1.42106 * 104.27301 * 153.92610 * 11 10 5 14 14 C 1.81391 * 104.44905 * 269.99930 * 11 10 5 15 15 C 1.53008 * 109.46846 * 180.02562 * 14 11 10 16 16 C 1.53004 * 109.46821 * 180.02562 * 15 14 11 17 17 C 1.50704 * 109.46631 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99599 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00332 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99967 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47178 * 90.00129 * 21 19 17 23 23 H 1.48495 * 109.47195 * 210.00192 * 21 19 17 24 24 H 1.48500 * 109.47010 * 330.00209 * 21 19 17 25 25 H 1.09000 * 109.47095 * 300.00114 * 1 2 3 26 26 H 1.09004 * 109.46972 * 59.99798 * 1 2 3 27 27 H 1.09000 * 109.47442 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47095 * 239.99886 * 2 1 3 29 29 H 1.08999 * 109.47236 * 313.32996 * 3 2 1 30 30 H 1.08999 * 109.46749 * 73.32863 * 3 2 1 31 31 H 1.08999 * 109.47196 * 193.32465 * 3 2 1 32 32 H 1.08995 * 109.46974 * 52.44491 * 4 2 1 33 33 H 1.08996 * 109.46764 * 292.44603 * 4 2 1 34 34 H 1.09007 * 109.46848 * 298.98627 * 6 5 4 35 35 H 1.09001 * 109.46863 * 58.98157 * 6 5 4 36 36 H 1.08994 * 109.47333 * 178.98500 * 6 5 4 37 37 H 1.08999 * 110.72047 * 260.04342 * 7 5 4 38 38 H 1.09005 * 110.71688 * 23.14320 * 7 5 4 39 39 H 1.09000 * 111.00550 * 206.42019 * 8 7 5 40 40 H 1.09008 * 110.99885 * 82.57712 * 8 7 5 41 41 H 1.09003 * 110.36813 * 278.17254 * 9 8 7 42 42 H 1.08998 * 110.37120 * 155.84805 * 9 8 7 43 43 H 1.08997 * 109.47258 * 299.99857 * 14 11 10 44 44 H 1.09004 * 109.47347 * 60.00681 * 14 11 10 45 45 H 1.08997 * 109.46747 * 299.99768 * 15 14 11 46 46 H 1.08994 * 109.47413 * 60.00174 * 15 14 11 47 47 H 1.08997 * 109.47115 * 299.99351 * 16 15 14 48 48 H 1.08994 * 109.47141 * 59.99816 * 16 15 14 49 49 H 0.97001 * 120.00244 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 3.5581 -0.8876 1.1581 6 6 3.9299 -1.5522 -0.1690 7 6 4.2477 0.4887 1.2671 8 6 5.5081 0.1795 2.1175 9 6 4.9704 -0.9000 3.0895 10 7 4.0396 -1.7071 2.2799 11 16 3.6074 -3.2766 2.5837 12 8 3.2485 -3.7942 1.3099 13 8 4.7085 -3.8095 3.3070 14 6 2.1474 -3.1454 3.6520 15 6 1.6477 -4.5472 4.0072 16 6 0.4158 -4.4365 4.9078 17 6 -0.0767 -5.8173 5.2572 18 1 0.4378 -6.6868 4.8754 19 6 -1.1834 -5.9705 6.0650 20 7 -1.8096 -4.9117 6.5303 21 14 -1.7944 -7.6820 6.4975 22 1 -1.1300 -8.1448 7.7424 23 1 -3.2643 -7.6450 6.7053 24 1 -1.4745 -8.6166 5.3888 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.4964 2.0201 -0.7475 30 1 1.8832 1.8832 0.9845 31 1 3.1040 1.4516 -0.2368 32 1 1.5705 -1.7025 1.3193 33 1 1.7911 -0.1355 2.1340 34 1 3.4710 -2.5395 -0.2220 35 1 3.5700 -0.9394 -0.9955 36 1 5.0134 -1.6510 -0.2349 37 1 4.5289 0.8583 0.2810 38 1 3.6019 1.2043 1.7760 39 1 5.8395 1.0644 2.6608 40 1 6.3104 -0.2188 1.4962 41 1 4.4426 -0.4328 3.9210 42 1 5.7878 -1.5196 3.4582 43 1 2.4120 -2.6122 4.5651 44 1 1.3616 -2.6011 3.1281 45 1 1.3832 -5.0808 3.0943 46 1 2.4336 -5.0912 4.5312 47 1 0.6800 -3.9028 5.8208 48 1 -0.3699 -3.8927 4.3835 49 1 -2.5880 -5.0195 7.0990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451716707.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:03 Heat of formation + Delta-G solvation = -114.783893 kcal Electronic energy + Delta-G solvation = -26564.195284 eV Core-core repulsion = 23037.742112 eV Total energy + Delta-G solvation = -3526.453172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.78900 -38.29308 -37.10002 -36.74375 -36.49150 -34.21029 -32.26266 -31.93934 -29.72798 -28.09692 -27.75572 -26.25366 -25.64823 -23.05948 -22.29030 -21.69691 -20.65864 -19.66674 -18.64603 -18.06573 -17.39407 -17.23631 -16.59979 -16.45564 -16.13795 -15.83874 -15.32688 -14.96388 -14.53440 -14.48808 -14.36409 -14.16690 -13.99323 -13.72604 -13.57709 -13.31701 -13.22569 -13.10614 -13.04598 -13.00731 -12.78611 -12.73594 -12.65541 -12.52548 -12.40150 -12.20810 -12.01044 -11.84047 -11.63953 -11.53246 -11.42860 -11.33861 -11.15310 -11.12438 -11.06392 -10.60430 -9.90546 -8.25192 -6.36828 -0.82709 1.38361 1.39370 1.50841 1.64066 2.37800 2.74432 3.02448 3.08176 3.47217 3.69618 3.70866 3.80188 3.87140 4.07795 4.14323 4.21022 4.30775 4.33855 4.44439 4.54089 4.57173 4.62963 4.76536 4.78619 4.83703 4.88569 4.90798 4.96155 4.98396 5.00767 5.05735 5.10101 5.14049 5.17938 5.26179 5.28095 5.40356 5.40674 5.43173 5.52253 5.55802 5.57092 5.66313 5.69157 5.75270 6.15936 6.78012 7.32669 8.86387 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.003615 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.302958 B = 7742.886934 C = 8660.415033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 C -0.157 4.157 4 C -0.140 4.140 5 C 0.176 3.824 6 C -0.184 4.184 7 C -0.115 4.115 8 C -0.123 4.123 9 C 0.100 3.900 10 N -1.004 6.004 11 S 2.631 3.369 12 O -0.974 6.974 13 O -0.990 6.990 14 C -0.613 4.613 15 C -0.104 4.104 16 C 0.034 3.966 17 C -0.555 4.555 18 H 0.060 0.940 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.964 3.036 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.265 1.265 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.609 17.740 -13.376 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C -0.213 4.213 4 C -0.179 4.179 5 C 0.090 3.910 6 C -0.242 4.242 7 C -0.153 4.153 8 C -0.162 4.162 9 C -0.024 4.024 10 N -0.843 5.843 11 S 2.729 3.271 12 O -0.965 6.965 13 O -0.981 6.981 14 C -0.743 4.743 15 C -0.143 4.143 16 C -0.004 4.004 17 C -0.593 4.593 18 H 0.078 0.922 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.189 1.189 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.021 0.979 48 H 0.020 0.980 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.917 16.926 -13.577 25.252 hybrid contribution -1.260 -0.900 0.980 1.832 sum 11.657 16.026 -12.597 23.482 Atomic orbital electron populations 1.21898 0.95647 1.01228 1.02226 1.21135 0.95343 0.97519 0.97162 1.22279 1.02702 0.94158 1.02197 1.22342 0.94531 1.00660 1.00335 1.20894 0.93220 0.91849 0.85039 1.22668 1.02026 1.02617 0.96930 1.23128 0.96274 0.93819 1.02098 1.22810 0.97625 0.98327 0.97428 1.22340 0.91993 0.93374 0.94696 1.58588 1.57872 1.30187 1.37609 1.04157 0.75749 0.72570 0.74586 1.93489 1.85549 1.78261 1.39167 1.93507 1.50990 1.77700 1.75892 1.30682 1.20359 1.06333 1.16935 1.21302 0.99948 0.92186 1.00892 1.18934 0.91799 0.96031 0.93682 1.21719 1.12936 0.93745 1.30858 0.92223 1.25936 0.96620 1.01279 0.95570 1.70071 1.20908 1.31086 1.34813 0.85467 0.77521 0.79293 0.78933 1.19610 1.20363 1.18916 0.92751 0.91499 0.94126 0.90352 0.92472 0.92192 0.90019 0.93891 0.90142 0.91634 0.89158 0.92374 0.87848 0.88617 0.87520 0.90800 0.90029 0.90952 0.84085 0.84279 0.91697 0.91755 0.97941 0.97971 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.15 71.98 0.66 -2.08 16 2 C -0.09 -1.50 2.59 -10.79 -0.03 -1.53 16 3 C -0.16 -1.72 7.73 71.98 0.56 -1.17 16 4 C -0.14 -2.80 3.82 30.60 0.12 -2.68 16 5 C 0.18 3.37 0.65 3.95 0.00 3.38 16 6 C -0.18 -3.83 7.76 71.98 0.56 -3.27 16 7 C -0.11 -1.33 4.01 31.78 0.13 -1.20 16 8 C -0.12 -1.44 7.08 31.98 0.23 -1.22 16 9 C 0.10 1.81 7.07 86.85 0.61 2.43 16 10 N -1.00 -23.56 3.04 -463.04 -1.41 -24.97 16 11 S 2.63 84.20 5.05 -56.49 -0.29 83.92 16 12 O -0.97 -35.23 14.70 -127.65 -1.88 -37.10 16 13 O -0.99 -37.25 17.28 -127.65 -2.21 -39.45 16 14 C -0.61 -20.39 6.13 71.98 0.44 -19.94 16 15 C -0.10 -4.48 5.16 30.60 0.16 -4.33 16 16 C 0.03 1.80 4.97 29.85 0.15 1.95 16 17 C -0.55 -32.25 9.11 25.60 0.23 -32.01 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.00 0.25 5.46 84.65 0.46 0.71 16 20 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 21 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.28 5.89 -2.39 -0.01 1.26 16 29 H 0.06 0.58 8.08 -2.39 -0.02 0.56 16 30 H 0.06 0.63 7.28 -2.39 -0.02 0.62 16 31 H 0.08 0.67 4.90 -2.39 -0.01 0.66 16 32 H 0.04 1.06 6.24 -2.39 -0.01 1.05 16 33 H 0.08 1.47 7.89 -2.39 -0.02 1.45 16 34 H 0.06 1.81 5.48 -2.38 -0.01 1.79 16 35 H 0.09 1.41 6.14 -2.39 -0.01 1.39 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 0.84 6.22 -2.39 -0.01 0.82 16 38 H 0.10 0.90 6.20 -2.38 -0.01 0.88 16 39 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.46 7.67 -2.39 -0.02 1.44 16 43 H 0.14 4.20 8.14 -2.39 -0.02 4.18 16 44 H 0.14 4.26 6.61 -2.39 -0.02 4.24 16 45 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 46 H 0.06 2.72 8.14 -2.39 -0.02 2.71 16 47 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 49 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -73.65 377.26 1.72 -71.93 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.91 Total: 15.93 kcal Atomic # 6 Polarization: -65.23 SS G_CDS: 4.28 Total: -60.96 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -1.12 Total: -80.97 kcal Atomic # 8 Polarization: -72.47 SS G_CDS: -4.08 Total: -76.56 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 84.20 SS G_CDS: -0.29 Total: 83.92 kcal Total: -73.65 1.72 -71.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451716707.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.856 kcal (2) G-P(sol) polarization free energy of solvation -73.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds