Wall clock time and date at job start Tue Mar 31 2020 13:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 C 1.53003 * 109.46760 * 240.00350 * 2 1 3 5 5 C 1.53001 * 109.47443 * 120.00566 * 2 1 3 6 6 C 1.52999 * 109.47104 * 65.92290 * 5 2 1 7 7 H 1.09004 * 110.77717 * 49.04470 * 6 5 2 8 8 C 1.55152 * 110.72381 * 285.80711 * 6 5 2 9 9 C 1.54908 * 101.58450 * 206.13708 * 8 6 5 10 10 N 1.47751 * 104.84187 * 37.09122 * 9 8 6 11 11 S 1.65590 * 125.82305 * 155.83402 * 10 9 8 12 12 O 1.42096 * 104.27942 * 25.97653 * 11 10 9 13 13 O 1.42104 * 104.27899 * 153.83893 * 11 10 9 14 14 C 1.81402 * 104.45049 * 269.90756 * 11 10 9 15 15 C 1.53000 * 109.47255 * 180.02562 * 14 11 10 16 16 C 1.53001 * 109.47072 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.47309 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99733 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00055 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99908 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47324 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47094 * 120.00163 * 21 19 17 24 24 H 1.48497 * 109.47377 * 240.00256 * 21 19 17 25 25 C 1.47023 * 108.52766 * 335.75238 * 10 9 8 26 26 H 1.09009 * 109.46786 * 283.23595 * 1 2 3 27 27 H 1.08999 * 109.47559 * 43.22896 * 1 2 3 28 28 H 1.08994 * 109.47269 * 163.23400 * 1 2 3 29 29 H 1.08997 * 109.47411 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47360 * 300.00425 * 3 2 1 31 31 H 1.09008 * 109.46965 * 60.00007 * 3 2 1 32 32 H 1.08993 * 109.47239 * 299.99683 * 4 2 1 33 33 H 1.09000 * 109.46937 * 60.00423 * 4 2 1 34 34 H 1.09011 * 109.46898 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.46950 * 305.92539 * 5 2 1 36 36 H 1.09001 * 109.46932 * 185.92811 * 5 2 1 37 37 H 1.09002 * 111.00142 * 324.20973 * 8 6 5 38 38 H 1.09002 * 111.00667 * 88.01691 * 8 6 5 39 39 H 1.08997 * 110.36884 * 155.84547 * 9 8 6 40 40 H 1.09000 * 110.36600 * 278.06138 * 9 8 6 41 41 H 1.09008 * 109.47141 * 300.00253 * 14 11 10 42 42 H 1.08998 * 109.46791 * 59.99618 * 14 11 10 43 43 H 1.09001 * 109.46888 * 299.99458 * 15 14 11 44 44 H 1.08997 * 109.47247 * 60.00309 * 15 14 11 45 45 H 1.09002 * 109.47088 * 300.00461 * 16 15 14 46 46 H 1.09006 * 109.47160 * 59.99625 * 16 15 14 47 47 H 0.97002 * 119.99504 * 179.97438 * 20 19 17 48 48 H 1.08994 * 109.88648 * 241.68575 * 25 10 9 49 49 H 1.09003 * 109.88138 * 120.67399 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 6 1.6552 -2.2004 1.1768 7 1 1.9249 -2.6232 0.2090 8 6 0.1404 -2.3878 1.4548 9 6 0.1015 -3.8364 2.0023 10 7 1.3314 -3.9688 2.8103 11 16 1.5633 -5.0366 4.0545 12 8 0.6789 -6.1103 3.7644 13 8 2.9700 -5.2349 4.0885 14 6 1.0113 -4.1384 5.5307 15 6 1.1784 -5.0302 6.7626 16 6 0.7134 -4.2723 8.0077 17 6 0.8774 -5.1509 9.2210 18 1 1.2741 -6.1498 9.1148 19 6 0.5220 -4.6792 10.4669 20 7 0.0394 -3.4626 10.5963 21 14 0.7260 -5.7680 11.9710 22 1 1.2856 -7.0806 11.5596 23 1 1.6507 -5.1157 12.9326 24 1 -0.5955 -5.9732 12.6165 25 6 2.3178 -2.9936 2.3229 26 1 -0.3633 0.2353 1.0005 27 1 -0.3634 0.7487 -0.7038 28 1 -0.3633 -0.9839 -0.2964 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6766 -1.7488 -1.2494 33 1 1.6766 -0.2072 -2.1392 34 1 3.1300 -0.7208 -1.2496 35 1 1.5927 -0.2725 2.1360 36 1 3.1249 -0.6303 1.3037 37 1 -0.2101 -1.6776 2.2038 38 1 -0.4392 -2.3010 0.5358 39 1 -0.7792 -3.9821 2.6277 40 1 0.1051 -4.5527 1.1806 41 1 1.6103 -3.2358 5.6520 42 1 -0.0381 -3.8656 5.4187 43 1 0.5796 -5.9329 6.6415 44 1 2.2279 -5.3025 6.8743 45 1 1.3124 -3.3697 8.1285 46 1 -0.3361 -3.9996 7.8962 47 1 -0.2109 -3.1309 11.4728 48 1 3.2009 -3.5135 1.9517 49 1 2.5983 -2.3157 3.1291 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452075848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:46 Heat of formation + Delta-G solvation = -102.770397 kcal Electronic energy + Delta-G solvation = -25356.389776 eV Core-core repulsion = 21830.457549 eV Total energy + Delta-G solvation = -3525.932228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.72678 -37.05159 -36.88259 -35.72134 -34.65861 -32.18033 -31.59884 -29.85779 -27.80318 -27.66533 -27.51412 -26.04359 -23.73645 -22.44687 -20.74884 -20.52551 -19.13882 -18.72771 -17.55236 -16.72964 -16.43969 -15.77868 -15.64724 -14.92489 -14.74429 -14.53980 -14.48108 -14.30629 -13.78971 -13.75119 -13.31312 -13.00937 -12.67042 -12.59632 -12.34217 -12.24663 -12.14405 -12.02682 -11.93904 -11.87761 -11.76279 -11.70097 -11.53285 -11.24151 -11.14117 -10.93694 -10.87648 -10.83306 -10.70329 -10.64522 -10.47959 -10.40031 -9.95313 -9.50031 -9.20330 -8.86723 -8.41295 -6.06002 -4.08901 0.43931 2.79247 3.29266 3.36730 3.41852 4.03099 4.03852 4.29005 4.35789 4.42591 4.46644 4.52841 4.64884 4.88278 5.05527 5.12314 5.14264 5.16457 5.20703 5.27065 5.30520 5.33154 5.35313 5.41806 5.44678 5.47807 5.52511 5.62602 5.64175 5.68439 5.73338 5.80109 5.88967 5.90061 5.95635 6.00906 6.07164 6.10492 6.16930 6.23962 6.37585 6.45669 6.87542 7.57082 7.66806 7.92294 8.32825 8.97597 9.55833 11.05300 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.002654 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.984128 B =10548.522150 C =11330.130285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.068 4.068 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.102 4.102 6 C -0.100 4.100 7 H 0.090 0.910 8 C -0.132 4.132 9 C 0.120 3.880 10 N -1.018 6.018 11 S 2.614 3.386 12 O -0.958 6.958 13 O -0.959 6.959 14 C -0.608 4.608 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.123 3.877 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.069 0.931 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 8.959 -25.029 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.069 4.069 3 C -0.199 4.199 4 C -0.203 4.203 5 C -0.140 4.140 6 C -0.119 4.119 7 H 0.108 0.892 8 C -0.170 4.170 9 C -0.005 4.005 10 N -0.855 5.855 11 S 2.712 3.288 12 O -0.949 6.949 13 O -0.949 6.949 14 C -0.740 4.740 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.563 4.563 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.002 4.002 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.668 8.125 -24.953 26.295 hybrid contribution -0.201 0.190 1.259 1.289 sum 1.468 8.315 -23.694 25.154 Atomic orbital electron populations 1.22225 0.94601 1.02084 1.01854 1.20521 0.95812 0.95268 0.95250 1.21885 1.00925 0.95424 1.01677 1.21992 1.01013 1.00408 0.96848 1.21702 1.01142 0.93517 0.97626 1.22377 0.95364 0.95420 0.98764 0.89206 1.23225 0.96202 0.95948 1.01668 1.22052 0.86342 0.97188 0.94961 1.58866 1.22930 1.54743 1.48961 1.05017 0.74482 0.74250 0.75078 1.93560 1.67571 1.50541 1.83223 1.93557 1.30427 1.84484 1.86458 1.30590 1.12337 1.13797 1.17276 1.21503 1.02002 0.97545 0.93490 1.19065 0.96756 0.95357 0.89584 1.21295 1.42664 1.00475 0.91902 0.92308 1.25027 0.95093 0.95139 0.99180 1.69972 1.43529 1.16214 1.23742 0.86495 0.77803 0.80768 0.82728 1.19595 1.20937 1.20932 1.21746 0.91376 0.90384 0.96711 0.92394 0.93182 0.91587 0.92725 0.92821 0.92623 0.92085 0.92943 0.92696 0.91285 0.91495 0.90277 0.89406 0.90704 0.91408 0.85551 0.85546 0.91607 0.91608 0.96138 0.96139 0.92960 0.91220 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 7.24 37.16 0.27 -0.59 16 2 C -0.07 -0.40 0.80 -154.51 -0.12 -0.53 16 3 C -0.14 -0.83 8.41 37.16 0.31 -0.52 16 4 C -0.15 -0.82 7.94 37.16 0.29 -0.52 16 5 C -0.10 -0.68 3.78 -26.73 -0.10 -0.78 16 6 C -0.10 -0.74 2.63 -88.79 -0.23 -0.97 16 7 H 0.09 0.62 5.84 -51.93 -0.30 0.31 16 8 C -0.13 -0.95 4.80 -24.59 -0.12 -1.07 16 9 C 0.12 1.16 6.92 -2.35 -0.02 1.15 16 10 N -1.02 -12.20 3.63 -111.17 -0.40 -12.60 16 11 S 2.61 40.78 5.65 -107.50 -0.61 40.17 16 12 O -0.96 -17.50 17.62 -57.54 -1.01 -18.52 16 13 O -0.96 -17.57 17.60 -57.54 -1.01 -18.58 16 14 C -0.61 -9.73 6.18 37.16 0.23 -9.50 16 15 C -0.11 -2.20 5.16 -26.73 -0.14 -2.34 16 16 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 17 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 21 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 25 C 0.12 1.24 6.48 -3.06 -0.02 1.22 16 26 H 0.06 0.35 7.52 -51.92 -0.39 -0.04 16 27 H 0.05 0.28 8.03 -51.93 -0.42 -0.14 16 28 H 0.07 0.35 5.19 -51.93 -0.27 0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 32 H 0.06 0.34 6.11 -51.93 -0.32 0.02 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 35 H 0.07 0.48 7.83 -51.93 -0.41 0.08 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.57 7.54 -51.93 -0.39 0.18 16 38 H 0.09 0.49 5.70 -51.93 -0.30 0.20 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.13 1.83 8.14 -51.92 -0.42 1.40 16 42 H 0.13 1.82 8.14 -51.92 -0.42 1.39 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -34.40 388.28 -10.75 -45.14 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -9.08 Total: -4.67 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: -0.19 Total: -27.50 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.33 Total: -38.60 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -2.03 Total: -37.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 40.78 SS G_CDS: -0.61 Total: 40.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.40 -10.75 -45.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452075848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.629 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds