Wall clock time and date at job start Tue Mar 31 2020 13:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 C 1.53003 * 109.46760 * 240.00350 * 2 1 3 5 5 C 1.53001 * 109.47443 * 120.00566 * 2 1 3 6 6 C 1.52999 * 109.47104 * 65.92290 * 5 2 1 7 7 H 1.09004 * 110.77717 * 49.04470 * 6 5 2 8 8 C 1.55152 * 110.72381 * 285.80711 * 6 5 2 9 9 C 1.54908 * 101.58450 * 206.13708 * 8 6 5 10 10 N 1.47751 * 104.84187 * 37.09122 * 9 8 6 11 11 S 1.65590 * 125.82305 * 155.83402 * 10 9 8 12 12 O 1.42096 * 104.27942 * 25.97653 * 11 10 9 13 13 O 1.42104 * 104.27899 * 153.83893 * 11 10 9 14 14 C 1.81402 * 104.45049 * 269.90756 * 11 10 9 15 15 C 1.53000 * 109.47255 * 180.02562 * 14 11 10 16 16 C 1.53001 * 109.47072 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.47309 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99733 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00055 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99908 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47324 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47094 * 120.00163 * 21 19 17 24 24 H 1.48497 * 109.47377 * 240.00256 * 21 19 17 25 25 C 1.47023 * 108.52766 * 335.75238 * 10 9 8 26 26 H 1.09009 * 109.46786 * 283.23595 * 1 2 3 27 27 H 1.08999 * 109.47559 * 43.22896 * 1 2 3 28 28 H 1.08994 * 109.47269 * 163.23400 * 1 2 3 29 29 H 1.08997 * 109.47411 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47360 * 300.00425 * 3 2 1 31 31 H 1.09008 * 109.46965 * 60.00007 * 3 2 1 32 32 H 1.08993 * 109.47239 * 299.99683 * 4 2 1 33 33 H 1.09000 * 109.46937 * 60.00423 * 4 2 1 34 34 H 1.09011 * 109.46898 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.46950 * 305.92539 * 5 2 1 36 36 H 1.09001 * 109.46932 * 185.92811 * 5 2 1 37 37 H 1.09002 * 111.00142 * 324.20973 * 8 6 5 38 38 H 1.09002 * 111.00667 * 88.01691 * 8 6 5 39 39 H 1.08997 * 110.36884 * 155.84547 * 9 8 6 40 40 H 1.09000 * 110.36600 * 278.06138 * 9 8 6 41 41 H 1.09008 * 109.47141 * 300.00253 * 14 11 10 42 42 H 1.08998 * 109.46791 * 59.99618 * 14 11 10 43 43 H 1.09001 * 109.46888 * 299.99458 * 15 14 11 44 44 H 1.08997 * 109.47247 * 60.00309 * 15 14 11 45 45 H 1.09002 * 109.47088 * 300.00461 * 16 15 14 46 46 H 1.09006 * 109.47160 * 59.99625 * 16 15 14 47 47 H 0.97002 * 119.99504 * 179.97438 * 20 19 17 48 48 H 1.08994 * 109.88648 * 241.68575 * 25 10 9 49 49 H 1.09003 * 109.88138 * 120.67399 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 6 1.6552 -2.2004 1.1768 7 1 1.9249 -2.6232 0.2090 8 6 0.1404 -2.3878 1.4548 9 6 0.1015 -3.8364 2.0023 10 7 1.3314 -3.9688 2.8103 11 16 1.5633 -5.0366 4.0545 12 8 0.6789 -6.1103 3.7644 13 8 2.9700 -5.2349 4.0885 14 6 1.0113 -4.1384 5.5307 15 6 1.1784 -5.0302 6.7626 16 6 0.7134 -4.2723 8.0077 17 6 0.8774 -5.1509 9.2210 18 1 1.2741 -6.1498 9.1148 19 6 0.5220 -4.6792 10.4669 20 7 0.0394 -3.4626 10.5963 21 14 0.7260 -5.7680 11.9710 22 1 1.2856 -7.0806 11.5596 23 1 1.6507 -5.1157 12.9326 24 1 -0.5955 -5.9732 12.6165 25 6 2.3178 -2.9936 2.3229 26 1 -0.3633 0.2353 1.0005 27 1 -0.3634 0.7487 -0.7038 28 1 -0.3633 -0.9839 -0.2964 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6766 -1.7488 -1.2494 33 1 1.6766 -0.2072 -2.1392 34 1 3.1300 -0.7208 -1.2496 35 1 1.5927 -0.2725 2.1360 36 1 3.1249 -0.6303 1.3037 37 1 -0.2101 -1.6776 2.2038 38 1 -0.4392 -2.3010 0.5358 39 1 -0.7792 -3.9821 2.6277 40 1 0.1051 -4.5527 1.1806 41 1 1.6103 -3.2358 5.6520 42 1 -0.0381 -3.8656 5.4187 43 1 0.5796 -5.9329 6.6415 44 1 2.2279 -5.3025 6.8743 45 1 1.3124 -3.3697 8.1285 46 1 -0.3361 -3.9996 7.8962 47 1 -0.2109 -3.1309 11.4728 48 1 3.2009 -3.5135 1.9517 49 1 2.5983 -2.3157 3.1291 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452075848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:45 Heat of formation + Delta-G solvation = -124.191044 kcal Electronic energy + Delta-G solvation = -25357.318645 eV Core-core repulsion = 21830.457549 eV Total energy + Delta-G solvation = -3526.861097 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.35600 -38.25131 -37.69012 -37.09508 -36.49722 -34.18845 -32.32334 -30.54619 -29.68350 -28.09544 -27.98917 -26.71858 -25.63138 -23.33465 -22.26894 -21.38334 -20.01672 -19.51780 -18.76906 -18.49086 -17.50754 -17.18650 -16.78370 -16.46843 -15.87020 -15.44407 -15.37304 -15.04122 -14.69902 -14.53132 -14.36762 -14.12431 -13.98396 -13.78410 -13.54495 -13.28669 -13.24414 -13.17272 -13.02426 -12.85147 -12.79140 -12.69530 -12.63483 -12.52196 -12.39263 -12.29127 -12.16407 -11.79366 -11.68533 -11.40417 -11.37122 -11.22898 -11.20550 -11.11585 -10.99826 -10.60079 -9.91158 -8.24745 -6.35906 -0.82684 1.38562 1.39072 1.52589 1.66875 2.38381 2.76867 3.02258 3.08757 3.54521 3.66496 3.75644 3.82068 3.90282 4.04310 4.12809 4.33769 4.35567 4.38300 4.54053 4.57394 4.60785 4.64687 4.76404 4.81327 4.88428 4.90338 4.93143 4.94639 4.99784 5.01144 5.06460 5.13409 5.15813 5.18591 5.24321 5.28816 5.39967 5.41249 5.42603 5.52652 5.54344 5.59451 5.66975 5.68884 5.76895 6.17272 6.79589 7.33538 8.87053 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.002654 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.984128 B =10548.522150 C =11330.130285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.066 4.066 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.100 4.100 6 C -0.091 4.091 7 H 0.099 0.901 8 C -0.124 4.124 9 C 0.107 3.893 10 N -1.014 6.014 11 S 2.640 3.360 12 O -0.986 6.986 13 O -0.988 6.988 14 C -0.607 4.607 15 C -0.106 4.106 16 C 0.032 3.968 17 C -0.552 4.552 18 H 0.060 0.940 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.964 3.036 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.112 3.888 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.002 0.998 46 H 0.003 0.997 47 H 0.265 0.735 48 H 0.064 0.936 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.146 9.207 -26.085 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.066 4.066 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.138 4.138 6 C -0.110 4.110 7 H 0.117 0.883 8 C -0.162 4.162 9 C -0.018 4.018 10 N -0.854 5.854 11 S 2.737 3.263 12 O -0.976 6.976 13 O -0.978 6.978 14 C -0.738 4.738 15 C -0.146 4.146 16 C -0.006 4.006 17 C -0.590 4.590 18 H 0.078 0.922 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.789 3.211 22 H -0.188 1.188 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.013 4.013 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.459 8.368 -26.006 27.358 hybrid contribution -0.139 0.179 1.517 1.534 sum 1.320 8.547 -24.489 25.971 Atomic orbital electron populations 1.22226 0.94270 1.02504 1.01764 1.20501 0.96045 0.95136 0.94960 1.21884 1.00891 0.95474 1.01677 1.21987 1.00926 1.00548 0.96743 1.21683 1.01196 0.92932 0.97954 1.22357 0.95231 0.95452 0.97993 0.88260 1.23253 0.96244 0.94118 1.02607 1.22375 0.85326 0.99131 0.94933 1.58550 1.24480 1.54605 1.47740 1.03958 0.73227 0.74012 0.75066 1.93519 1.68086 1.52306 1.83698 1.93514 1.32097 1.85193 1.87012 1.30541 1.13982 1.13589 1.15696 1.21321 1.01761 0.97894 0.93581 1.18956 0.95431 0.94901 0.91346 1.21756 1.42863 1.01012 0.93381 0.92200 1.25951 0.94589 0.96577 1.02493 1.70080 1.44235 1.17871 1.24782 0.85408 0.78098 0.78992 0.78631 1.18828 1.20144 1.20109 1.22020 0.91111 0.90281 0.97923 0.92676 0.93053 0.90941 0.92812 0.92483 0.92973 0.91765 0.92656 0.92882 0.91599 0.91501 0.89983 0.87212 0.90368 0.90821 0.84029 0.83865 0.91553 0.91638 0.97922 0.97864 0.92585 0.91724 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.24 71.98 0.52 -0.85 16 2 C -0.07 -0.65 0.80 -52.18 -0.04 -0.69 16 3 C -0.14 -1.45 8.41 71.98 0.61 -0.84 16 4 C -0.14 -1.32 7.94 71.98 0.57 -0.75 16 5 C -0.10 -1.13 3.78 30.59 0.12 -1.02 16 6 C -0.09 -1.15 2.63 -9.61 -0.03 -1.17 16 7 H 0.10 1.11 5.84 -2.38 -0.01 1.09 16 8 C -0.12 -1.47 4.80 31.98 0.15 -1.31 16 9 C 0.11 1.87 6.92 86.79 0.60 2.47 16 10 N -1.01 -23.01 3.63 -505.64 -1.84 -24.85 16 11 S 2.64 80.98 5.65 -56.49 -0.32 80.66 16 12 O -0.99 -35.57 17.62 -127.65 -2.25 -37.82 16 13 O -0.99 -36.00 17.60 -127.65 -2.25 -38.25 16 14 C -0.61 -19.14 6.18 71.98 0.44 -18.70 16 15 C -0.11 -4.45 5.16 30.59 0.16 -4.30 16 16 C 0.03 1.67 4.97 29.85 0.15 1.82 16 17 C -0.55 -31.81 9.11 25.60 0.23 -31.57 16 18 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 19 C 0.00 0.12 5.46 84.65 0.46 0.58 16 20 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 21 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 C 0.11 2.09 6.48 86.73 0.56 2.65 16 26 H 0.05 0.54 7.52 -2.38 -0.02 0.52 16 27 H 0.05 0.46 8.03 -2.39 -0.02 0.44 16 28 H 0.07 0.55 5.19 -2.39 -0.01 0.54 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.54 6.11 -2.39 -0.01 0.53 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.07 0.81 7.83 -2.39 -0.02 0.79 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.97 7.54 -2.39 -0.02 0.95 16 38 H 0.11 0.86 5.70 -2.39 -0.01 0.85 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.14 4.00 8.14 -2.39 -0.02 3.98 16 42 H 0.14 3.99 8.14 -2.39 -0.02 3.98 16 43 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 47 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 48 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.07 1.24 7.82 -2.39 -0.02 1.23 16 Total: -1.00 -73.46 388.28 1.06 -72.41 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.89 Total: 10.75 kcal Atomic # 6 Polarization: -58.18 SS G_CDS: 4.51 Total: -53.67 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.55 Total: -80.63 kcal Atomic # 8 Polarization: -71.57 SS G_CDS: -4.50 Total: -76.07 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 80.98 SS G_CDS: -0.32 Total: 80.66 kcal Total: -73.46 1.06 -72.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452075848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.785 kcal (2) G-P(sol) polarization free energy of solvation -73.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds