Wall clock time and date at job start Tue Mar 31 2020 12:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46958 * 2 1 4 4 C 1.52999 * 113.00082 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47083 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99696 * 179.72401 * 5 4 3 7 7 O 1.21276 * 120.00412 * 0.27402 * 6 5 4 8 8 C 1.50709 * 119.99785 * 180.28046 * 6 5 4 9 9 C 1.53000 * 109.46752 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.47189 * 55.00084 * 9 8 6 11 11 C 1.50695 * 109.47303 * 294.99522 * 9 8 6 12 12 H 1.08004 * 120.00082 * 325.85479 * 11 9 8 13 13 C 1.37876 * 119.99747 * 145.85288 * 11 9 8 14 14 N 1.31513 * 120.00452 * 6.12045 * 13 11 9 15 15 Si 1.86807 * 119.99789 * 186.11910 * 13 11 9 16 16 H 1.48495 * 109.47118 * 90.00412 * 15 13 11 17 17 H 1.48498 * 109.46963 * 210.00065 * 15 13 11 18 18 H 1.48499 * 109.47102 * 329.99864 * 15 13 11 19 19 C 1.50703 * 109.46744 * 174.99852 * 9 8 6 20 20 C 1.38225 * 120.00215 * 63.45815 * 19 9 8 21 21 C 1.38238 * 120.00283 * 179.79009 * 20 19 9 22 22 C 1.38237 * 119.99586 * 0.43786 * 21 20 19 23 23 C 1.38234 * 120.00002 * 359.81542 * 22 21 20 24 24 C 1.38230 * 120.00042 * 359.97438 * 23 22 21 25 25 C 1.54036 * 113.81382 * 311.82281 * 3 2 1 26 26 O 1.44443 * 85.42578 * 91.81014 * 25 3 2 27 27 C 1.44175 * 93.37972 * 24.08819 * 26 25 3 28 28 H 1.09004 * 109.47353 * 300.00343 * 1 2 3 29 29 H 1.08993 * 109.47227 * 60.00362 * 1 2 3 30 30 H 1.08999 * 109.46881 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47190 * 239.99720 * 2 1 3 32 32 H 1.09001 * 109.47057 * 119.99362 * 2 1 3 33 33 H 1.09005 * 109.47119 * 59.99642 * 4 3 2 34 34 H 1.09004 * 109.47197 * 299.99840 * 4 3 2 35 35 H 0.97003 * 120.00198 * 0.02562 * 5 4 3 36 36 H 1.09004 * 109.46912 * 299.99435 * 8 6 5 37 37 H 1.08991 * 109.47171 * 59.99942 * 8 6 5 38 38 H 0.97002 * 120.00023 * 179.97438 * 14 13 11 39 39 H 1.08002 * 119.99996 * 359.97438 * 20 19 9 40 40 H 1.08002 * 120.00430 * 180.27694 * 21 20 19 41 41 H 1.08004 * 119.99434 * 179.83746 * 22 21 20 42 42 H 1.07999 * 119.99277 * 180.02562 * 23 22 21 43 43 H 1.08007 * 119.99801 * 179.97438 * 24 23 22 44 44 H 1.08994 * 113.86943 * 205.91548 * 25 3 2 45 45 H 1.09007 * 113.86571 * 337.62424 * 25 3 2 46 46 H 1.09003 * 113.86783 * 221.76880 * 27 26 25 47 47 H 1.08996 * 113.86693 * 90.05948 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5670 1.5368 -0.0006 5 7 3.9694 2.9454 -0.0012 6 6 5.2768 3.2728 0.0038 7 8 6.1202 2.4013 0.0038 8 6 5.6906 4.7219 0.0096 9 6 7.2177 4.8160 0.0152 10 1 7.6196 4.2526 -0.8270 11 6 7.7516 4.2439 1.3030 12 1 7.1903 4.3587 2.2186 13 6 8.9566 3.5739 1.3125 14 7 9.6973 3.5374 0.2264 15 14 9.5371 2.7178 2.8680 16 1 9.0418 1.3179 2.8769 17 1 11.0215 2.7179 2.9085 18 1 9.0095 3.4371 4.0552 19 6 7.6324 6.2601 -0.1029 20 6 7.2988 7.1586 0.8931 21 6 7.6829 8.4823 0.7869 22 6 8.3927 8.9093 -0.3198 23 6 8.7217 8.0118 -1.3184 24 6 8.3414 6.6873 -1.2100 25 6 1.3613 2.3422 -1.0502 26 8 0.4263 2.6675 0.0017 27 6 1.3612 2.3423 1.0500 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.9610 1.0464 -0.8909 34 1 3.9617 1.0462 0.8892 35 1 3.2948 3.6425 -0.0008 36 1 5.2991 5.2151 -0.8801 37 1 5.2937 5.2096 0.8998 38 1 10.5452 3.0663 0.2332 39 1 6.7407 6.8259 1.7558 40 1 7.4262 9.1835 1.5672 41 1 8.6905 9.9440 -0.4041 42 1 9.2767 8.3454 -2.1828 43 1 8.5981 5.9861 -1.9905 44 1 1.9740 3.1843 -1.3716 45 1 0.9185 1.7931 -1.8813 46 1 0.9185 1.7933 1.8811 47 1 1.9740 3.1845 1.3713 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456480890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:21 Heat of formation + Delta-G solvation = -31.089561 kcal Electronic energy + Delta-G solvation = -26756.362903 eV Core-core repulsion = 23098.095038 eV Total energy + Delta-G solvation = -3658.267865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.30520 -38.93109 -38.10860 -34.74917 -33.89957 -33.30772 -31.46051 -30.00130 -29.71314 -28.48740 -26.82800 -25.92005 -24.94686 -23.47788 -22.47459 -21.59924 -20.17762 -19.31354 -18.74746 -17.02257 -16.47879 -16.36892 -16.26543 -15.98465 -15.36310 -14.74740 -14.68880 -14.51508 -14.28344 -14.05873 -13.82841 -13.25304 -13.15779 -12.89789 -12.53851 -12.42350 -12.31503 -12.20709 -11.94033 -11.83840 -11.65014 -11.51831 -11.44510 -10.86388 -10.70330 -10.57606 -10.53880 -10.52437 -10.24828 -10.04775 -9.70409 -9.44118 -9.07302 -8.88286 -8.59479 -8.32407 -8.03343 -7.59587 -5.92711 -3.92168 2.29998 2.35867 3.38748 3.44285 3.45827 3.46007 3.53871 3.67357 3.89863 4.49823 4.52636 4.67516 4.76390 4.91189 5.07642 5.13410 5.29949 5.29973 5.36995 5.42618 5.56535 5.67260 5.72055 5.73232 5.74098 5.77837 5.85319 5.89505 5.91668 5.97588 6.06773 6.09815 6.12377 6.19780 6.29690 6.42420 6.54630 6.81078 6.87567 6.92086 7.05777 7.32209 7.45525 7.53790 7.86341 7.96178 8.02120 8.08196 8.39385 9.06125 9.08739 9.69903 11.17534 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.003658 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.729476 B = 7653.590636 C = 9099.753566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.136 4.136 4 C 0.129 3.871 5 N -0.754 5.754 6 C 0.512 3.488 7 O -0.493 6.493 8 C -0.123 4.123 9 C 0.080 3.920 10 H 0.072 0.928 11 C -0.492 4.492 12 H 0.050 0.950 13 C 0.079 3.921 14 N -0.881 5.881 15 Si 0.886 3.114 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.276 1.276 19 C -0.021 4.021 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.119 4.119 25 C 0.040 3.960 26 O -0.377 6.377 27 C 0.040 3.960 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.390 0.610 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.259 0.741 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.806 -0.289 -2.261 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.137 4.137 4 C 0.005 3.995 5 N -0.411 5.411 6 C 0.299 3.701 7 O -0.364 6.364 8 C -0.163 4.163 9 C 0.061 3.939 10 H 0.090 0.910 11 C -0.530 4.530 12 H 0.068 0.932 13 C -0.124 4.124 14 N -0.518 5.518 15 Si 0.714 3.286 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.201 1.201 19 C -0.021 4.021 20 C -0.134 4.134 21 C -0.150 4.150 22 C -0.174 4.174 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.037 4.037 26 O -0.295 6.295 27 C -0.037 4.037 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.225 0.775 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.222 -0.933 -2.333 15.428 hybrid contribution 0.435 -0.194 0.977 1.087 sum -14.787 -1.127 -1.356 14.892 Atomic orbital electron populations 1.21792 0.94838 1.00998 1.02866 1.21215 0.96457 0.92867 1.03015 1.23937 0.95607 0.97650 0.96495 1.21035 0.91719 0.84053 1.02690 1.46371 1.08231 1.07001 1.79539 1.20917 0.80886 0.92649 0.75652 1.90765 1.49895 1.50590 1.45106 1.21806 1.01701 0.91504 1.01313 1.17831 0.87312 0.87989 1.00750 0.91007 1.20674 1.04990 1.34368 0.92920 0.93185 1.24800 0.96563 0.95364 0.95679 1.69911 1.12259 1.42110 1.27545 0.86706 0.77533 0.80459 0.83883 1.20685 1.21508 1.20135 1.20734 0.93308 0.96930 0.91160 1.20943 1.01114 0.92459 0.98857 1.20976 1.00140 0.96181 0.97694 1.20794 1.02289 0.98590 0.95725 1.20982 1.00834 0.94161 0.98649 1.21088 0.99330 0.94711 0.98581 1.24149 0.90024 0.97091 0.92423 1.89709 1.32721 1.90396 1.16702 1.24101 0.90022 0.97114 0.92448 0.92261 0.92268 0.93048 0.90977 0.90958 0.91369 0.91274 0.77525 0.91683 0.90559 0.93149 0.86932 0.87685 0.87821 0.87654 0.86851 0.89749 0.89017 0.89031 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.63 37.16 0.32 -0.86 16 2 C -0.10 -0.82 5.65 -26.73 -0.15 -0.97 16 3 C -0.14 -1.32 1.38 -153.43 -0.21 -1.53 16 4 C 0.13 1.65 5.32 -4.05 -0.02 1.63 16 5 N -0.75 -10.62 4.70 -60.29 -0.28 -10.91 16 6 C 0.51 9.89 7.58 -10.98 -0.08 9.80 16 7 O -0.49 -12.08 14.98 5.56 0.08 -12.00 16 8 C -0.12 -2.32 4.95 -27.88 -0.14 -2.46 16 9 C 0.08 1.90 1.67 -92.92 -0.16 1.74 16 10 H 0.07 1.96 6.98 -51.93 -0.36 1.59 16 11 C -0.49 -13.13 6.37 -34.44 -0.22 -13.35 16 12 H 0.05 1.33 7.82 -52.48 -0.41 0.92 16 13 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 14 N -0.88 -25.87 12.87 55.43 0.71 -25.16 16 15 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 16 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 20 C -0.12 -2.33 8.86 -39.59 -0.35 -2.68 16 21 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 22 C -0.16 -2.72 10.05 -39.58 -0.40 -3.11 16 23 C -0.13 -2.37 10.05 -39.59 -0.40 -2.76 16 24 C -0.12 -2.51 9.67 -39.58 -0.38 -2.89 16 25 C 0.04 0.38 7.45 37.64 0.28 0.66 16 26 O -0.38 -4.08 10.87 -35.23 -0.38 -4.47 16 27 C 0.04 0.39 7.44 37.64 0.28 0.67 16 28 H 0.06 0.50 6.53 -51.93 -0.34 0.16 16 29 H 0.06 0.50 6.53 -51.93 -0.34 0.16 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.39 4.48 5.84 -40.82 -0.24 4.24 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.33 7.77 -51.93 -0.40 0.93 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.11 2.18 7.76 -52.49 -0.41 1.77 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.10 1.51 8.06 -52.48 -0.42 1.08 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 43 H 0.11 2.41 7.95 -52.48 -0.42 1.99 16 44 H 0.08 0.78 6.68 -51.93 -0.35 0.43 16 45 H 0.09 0.76 7.33 -51.92 -0.38 0.38 16 46 H 0.09 0.79 7.33 -51.93 -0.38 0.41 16 47 H 0.08 0.82 6.69 -51.93 -0.35 0.47 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -32.17 376.15 -9.16 -41.33 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.31 Total: 6.04 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.62 Total: -17.71 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.43 Total: -36.06 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.30 Total: -16.46 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.17 -9.16 -41.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456480890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.237 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds