Wall clock time and date at job start Tue Mar 31 2020 12:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46958 * 2 1 4 4 C 1.52999 * 113.00082 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47083 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99696 * 179.72401 * 5 4 3 7 7 O 1.21276 * 120.00412 * 0.27402 * 6 5 4 8 8 C 1.50709 * 119.99785 * 180.28046 * 6 5 4 9 9 C 1.53000 * 109.46752 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.47189 * 55.00084 * 9 8 6 11 11 C 1.50695 * 109.47303 * 294.99522 * 9 8 6 12 12 H 1.08004 * 120.00082 * 325.85479 * 11 9 8 13 13 C 1.37876 * 119.99747 * 145.85288 * 11 9 8 14 14 N 1.31513 * 120.00452 * 6.12045 * 13 11 9 15 15 Si 1.86807 * 119.99789 * 186.11910 * 13 11 9 16 16 H 1.48495 * 109.47118 * 90.00412 * 15 13 11 17 17 H 1.48498 * 109.46963 * 210.00065 * 15 13 11 18 18 H 1.48499 * 109.47102 * 329.99864 * 15 13 11 19 19 C 1.50703 * 109.46744 * 174.99852 * 9 8 6 20 20 C 1.38225 * 120.00215 * 63.45815 * 19 9 8 21 21 C 1.38238 * 120.00283 * 179.79009 * 20 19 9 22 22 C 1.38237 * 119.99586 * 0.43786 * 21 20 19 23 23 C 1.38234 * 120.00002 * 359.81542 * 22 21 20 24 24 C 1.38230 * 120.00042 * 359.97438 * 23 22 21 25 25 C 1.54036 * 113.81382 * 311.82281 * 3 2 1 26 26 O 1.44443 * 85.42578 * 91.81014 * 25 3 2 27 27 C 1.44175 * 93.37972 * 24.08819 * 26 25 3 28 28 H 1.09004 * 109.47353 * 300.00343 * 1 2 3 29 29 H 1.08993 * 109.47227 * 60.00362 * 1 2 3 30 30 H 1.08999 * 109.46881 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47190 * 239.99720 * 2 1 3 32 32 H 1.09001 * 109.47057 * 119.99362 * 2 1 3 33 33 H 1.09005 * 109.47119 * 59.99642 * 4 3 2 34 34 H 1.09004 * 109.47197 * 299.99840 * 4 3 2 35 35 H 0.97003 * 120.00198 * 0.02562 * 5 4 3 36 36 H 1.09004 * 109.46912 * 299.99435 * 8 6 5 37 37 H 1.08991 * 109.47171 * 59.99942 * 8 6 5 38 38 H 0.97002 * 120.00023 * 179.97438 * 14 13 11 39 39 H 1.08002 * 119.99996 * 359.97438 * 20 19 9 40 40 H 1.08002 * 120.00430 * 180.27694 * 21 20 19 41 41 H 1.08004 * 119.99434 * 179.83746 * 22 21 20 42 42 H 1.07999 * 119.99277 * 180.02562 * 23 22 21 43 43 H 1.08007 * 119.99801 * 179.97438 * 24 23 22 44 44 H 1.08994 * 113.86943 * 205.91548 * 25 3 2 45 45 H 1.09007 * 113.86571 * 337.62424 * 25 3 2 46 46 H 1.09003 * 113.86783 * 221.76880 * 27 26 25 47 47 H 1.08996 * 113.86693 * 90.05948 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5670 1.5368 -0.0006 5 7 3.9694 2.9454 -0.0012 6 6 5.2768 3.2728 0.0038 7 8 6.1202 2.4013 0.0038 8 6 5.6906 4.7219 0.0096 9 6 7.2177 4.8160 0.0152 10 1 7.6196 4.2526 -0.8270 11 6 7.7516 4.2439 1.3030 12 1 7.1903 4.3587 2.2186 13 6 8.9566 3.5739 1.3125 14 7 9.6973 3.5374 0.2264 15 14 9.5371 2.7178 2.8680 16 1 9.0418 1.3179 2.8769 17 1 11.0215 2.7179 2.9085 18 1 9.0095 3.4371 4.0552 19 6 7.6324 6.2601 -0.1029 20 6 7.2988 7.1586 0.8931 21 6 7.6829 8.4823 0.7869 22 6 8.3927 8.9093 -0.3198 23 6 8.7217 8.0118 -1.3184 24 6 8.3414 6.6873 -1.2100 25 6 1.3613 2.3422 -1.0502 26 8 0.4263 2.6675 0.0017 27 6 1.3612 2.3423 1.0500 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.9610 1.0464 -0.8909 34 1 3.9617 1.0462 0.8892 35 1 3.2948 3.6425 -0.0008 36 1 5.2991 5.2151 -0.8801 37 1 5.2937 5.2096 0.8998 38 1 10.5452 3.0663 0.2332 39 1 6.7407 6.8259 1.7558 40 1 7.4262 9.1835 1.5672 41 1 8.6905 9.9440 -0.4041 42 1 9.2767 8.3454 -2.1828 43 1 8.5981 5.9861 -1.9905 44 1 1.9740 3.1843 -1.3716 45 1 0.9185 1.7931 -1.8813 46 1 0.9185 1.7933 1.8811 47 1 1.9740 3.1845 1.3713 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456480890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:18 Heat of formation + Delta-G solvation = -50.321206 kcal Electronic energy + Delta-G solvation = -26757.196850 eV Core-core repulsion = 23098.095038 eV Total energy + Delta-G solvation = -3659.101811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.16711 -40.46963 -39.61273 -36.09379 -35.52606 -34.25907 -33.38847 -31.49142 -30.92995 -29.77444 -27.59150 -27.56461 -26.17219 -24.68603 -23.77246 -23.10317 -21.64202 -20.90395 -19.55237 -18.56454 -18.19544 -17.37488 -17.25306 -17.16519 -16.74485 -16.43073 -16.04603 -15.74686 -15.43981 -15.43779 -15.35933 -14.55075 -14.40218 -14.06447 -13.95744 -13.94091 -13.56646 -13.43805 -13.17989 -13.14609 -12.88647 -12.85559 -12.54443 -12.47663 -12.33734 -12.29645 -11.81836 -11.68430 -11.37690 -11.30499 -11.30309 -10.94823 -10.64722 -10.49726 -10.34579 -9.94048 -9.53062 -9.17787 -8.03527 -6.05782 0.79042 0.85423 1.35654 1.40168 1.44700 1.98524 2.34712 2.46730 2.72968 3.09535 3.19822 3.37325 3.68041 3.84509 4.12756 4.19903 4.26635 4.35559 4.36885 4.38707 4.42131 4.55567 4.56638 4.61050 4.64122 4.68838 4.72419 4.73689 4.79455 4.94312 5.00544 5.02922 5.11032 5.13918 5.20909 5.26018 5.26559 5.38943 5.48240 5.53980 5.61261 5.65860 5.79808 5.85020 5.96586 6.18701 6.42903 6.47956 6.72638 7.02303 7.56806 7.59794 9.06281 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.003658 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.729476 B = 7653.590636 C = 9099.753566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.127 4.127 4 C 0.130 3.870 5 N -0.730 5.730 6 C 0.512 3.488 7 O -0.554 6.554 8 C -0.118 4.118 9 C 0.083 3.917 10 H 0.024 0.976 11 C -0.484 4.484 12 H 0.047 0.953 13 C 0.024 3.976 14 N -0.917 5.917 15 Si 0.933 3.067 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.263 1.263 19 C -0.045 4.045 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.148 4.148 23 C -0.129 4.129 24 C -0.144 4.144 25 C 0.040 3.960 26 O -0.387 6.387 27 C 0.039 3.961 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.407 0.593 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.253 0.747 39 H 0.116 0.884 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.635 1.778 -1.464 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.127 4.127 4 C 0.006 3.994 5 N -0.387 5.387 6 C 0.300 3.700 7 O -0.430 6.430 8 C -0.158 4.158 9 C 0.063 3.937 10 H 0.042 0.958 11 C -0.522 4.522 12 H 0.066 0.934 13 C -0.174 4.174 14 N -0.557 5.557 15 Si 0.761 3.239 16 H -0.216 1.216 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.045 4.045 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.166 4.166 23 C -0.147 4.147 24 C -0.162 4.162 25 C -0.037 4.037 26 O -0.306 6.306 27 C -0.038 4.038 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.244 0.756 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.062 0.938 39 H 0.134 0.866 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.112 0.888 44 H 0.104 0.896 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.123 1.163 -1.522 17.230 hybrid contribution 0.912 -0.754 0.680 1.365 sum -16.212 0.409 -0.841 16.238 Atomic orbital electron populations 1.21743 0.94114 1.01623 1.02486 1.21242 0.96930 0.91897 1.03429 1.23910 0.92870 0.98824 0.97140 1.21082 0.94057 0.82643 1.01578 1.46077 1.06888 1.08389 1.77314 1.21018 0.81884 0.92280 0.74865 1.90750 1.51917 1.51973 1.48382 1.21691 0.98751 0.91869 1.03460 1.17618 0.90004 0.88675 0.97368 0.95790 1.20981 1.04143 1.33148 0.93902 0.93447 1.25467 0.97367 0.96728 0.97882 1.70051 1.12592 1.43862 1.29221 0.85942 0.77106 0.79128 0.81755 1.21599 1.21374 1.18701 1.20566 0.94959 0.96296 0.92722 1.21041 1.01769 0.93423 0.98362 1.21374 0.98859 0.95608 0.98607 1.21260 1.00619 1.00173 0.94554 1.21283 1.00348 0.93004 1.00018 1.21106 1.00572 0.96060 0.98487 1.24251 0.89781 0.97060 0.92567 1.89709 1.33201 1.90483 1.17226 1.24188 0.89855 0.97079 0.92650 0.92679 0.92536 0.91967 0.90516 0.90735 0.92321 0.92707 0.75552 0.89067 0.88557 0.93819 0.86607 0.84178 0.83924 0.85096 0.88834 0.89617 0.87627 0.87842 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.63 71.98 0.62 -1.39 16 2 C -0.10 -1.50 5.65 30.60 0.17 -1.32 16 3 C -0.13 -2.29 1.38 -51.48 -0.07 -2.36 16 4 C 0.13 3.31 5.32 86.38 0.46 3.77 16 5 N -0.73 -20.23 4.70 -463.06 -2.18 -22.41 16 6 C 0.51 20.12 7.58 87.66 0.66 20.78 16 7 O -0.55 -28.46 14.98 -3.02 -0.05 -28.50 16 8 C -0.12 -4.45 4.95 29.85 0.15 -4.31 16 9 C 0.08 4.04 1.67 -12.29 -0.02 4.01 16 10 H 0.02 1.39 6.98 -2.38 -0.02 1.37 16 11 C -0.48 -26.48 6.37 25.60 0.16 -26.32 16 12 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 13 C 0.02 1.41 5.45 84.65 0.46 1.87 16 14 N -0.92 -56.54 12.87 21.45 0.28 -56.26 16 15 Si 0.93 46.73 29.54 68.60 2.03 48.76 16 16 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 17 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 18 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 19 C -0.04 -1.99 4.77 -19.87 -0.09 -2.09 16 20 C -0.13 -4.95 8.86 22.27 0.20 -4.75 16 21 C -0.13 -4.10 10.05 22.27 0.22 -3.87 16 22 C -0.15 -4.59 10.05 22.27 0.22 -4.37 16 23 C -0.13 -4.51 10.05 22.27 0.22 -4.28 16 24 C -0.14 -6.17 9.67 22.27 0.22 -5.95 16 25 C 0.04 0.68 7.45 72.30 0.54 1.22 16 26 O -0.39 -7.61 10.87 -148.98 -1.62 -9.23 16 27 C 0.04 0.68 7.44 72.29 0.54 1.22 16 28 H 0.05 0.83 6.53 -2.39 -0.02 0.81 16 29 H 0.06 0.83 6.53 -2.39 -0.02 0.82 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.41 8.70 5.84 -92.71 -0.54 8.16 16 36 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.10 3.24 7.77 -2.39 -0.02 3.22 16 38 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.12 4.30 7.76 -2.91 -0.02 4.28 16 40 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 41 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 42 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 43 H 0.09 4.25 7.95 -2.91 -0.02 4.22 16 44 H 0.09 1.42 6.68 -2.39 -0.02 1.41 16 45 H 0.11 1.52 7.33 -2.38 -0.02 1.50 16 46 H 0.10 1.58 7.33 -2.39 -0.02 1.57 16 47 H 0.08 1.47 6.69 -2.39 -0.02 1.46 16 Total: -1.00 -73.20 376.15 3.54 -69.65 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.42 Total: 26.13 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 4.66 Total: -28.14 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -1.90 Total: -78.67 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.66 Total: -37.73 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -73.20 3.54 -69.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456480890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.333 kcal (2) G-P(sol) polarization free energy of solvation -73.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds