Wall clock time and date at job start Tue Mar 31 2020 13:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47599 * 2 1 4 4 C 1.50700 * 109.47144 * 120.00103 * 2 1 3 5 5 O 1.21289 * 120.00053 * 119.99329 * 4 2 1 6 6 N 1.34775 * 120.00167 * 299.99825 * 4 2 1 7 7 C 1.39937 * 120.00344 * 184.31145 * 6 4 2 8 8 C 1.39292 * 119.94342 * 144.80744 * 7 6 4 9 9 C 1.38491 * 120.42450 * 180.02562 * 8 7 6 10 10 C 1.37679 * 120.32383 * 359.97438 * 9 8 7 11 11 C 1.40743 * 119.88387 * 0.02562 * 10 9 8 12 12 C 1.41410 * 120.20734 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99855 * 34.75217 * 12 11 10 14 14 C 1.39926 * 120.00047 * 214.74703 * 12 11 10 15 15 N 1.30832 * 120.00218 * 355.55753 * 14 12 11 16 16 Si 1.86802 * 120.00248 * 175.56071 * 14 12 11 17 17 H 1.48497 * 109.47234 * 89.99663 * 16 14 12 18 18 H 1.48494 * 109.47241 * 210.00061 * 16 14 12 19 19 H 1.48498 * 109.46914 * 330.00106 * 16 14 12 20 20 C 1.38242 * 119.94828 * 324.53512 * 7 6 4 21 21 C 1.53004 * 109.47041 * 239.99539 * 2 1 3 22 22 C 1.53181 * 109.54254 * 179.82238 * 21 2 1 23 23 C 1.53106 * 109.15682 * 183.24505 * 22 21 2 24 24 O 1.42906 * 109.48399 * 57.47591 * 23 22 21 25 25 C 1.42905 * 114.09778 * 298.88355 * 24 23 22 26 26 C 1.53097 * 109.41161 * 61.16338 * 25 24 23 27 27 H 1.09002 * 109.46847 * 300.00023 * 1 2 3 28 28 H 1.09004 * 109.47074 * 60.00057 * 1 2 3 29 29 H 1.09007 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47390 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47091 * 300.00575 * 3 2 1 32 32 H 1.08998 * 109.46784 * 59.99389 * 3 2 1 33 33 H 0.97003 * 119.99840 * 4.59157 * 6 4 2 34 34 H 1.07999 * 119.78891 * 359.97438 * 8 7 6 35 35 H 1.08002 * 119.83579 * 180.02562 * 9 8 7 36 36 H 1.08002 * 120.05821 * 179.97438 * 10 9 8 37 37 H 0.97002 * 120.00543 * 179.97438 * 15 14 12 38 38 H 1.07992 * 120.15794 * 359.97438 * 20 7 6 39 39 H 1.09000 * 109.54638 * 300.00546 * 21 2 1 40 40 H 1.09001 * 109.52398 * 303.05845 * 22 21 2 41 41 H 1.09003 * 109.52203 * 63.25349 * 22 21 2 42 42 H 1.08999 * 109.40661 * 297.49808 * 23 22 21 43 43 H 1.08990 * 109.49061 * 177.51022 * 23 22 21 44 44 H 1.08993 * 109.48428 * 301.17950 * 25 24 23 45 45 H 1.09003 * 109.48627 * 181.14476 * 25 24 23 46 46 H 1.09000 * 109.52101 * 182.47734 * 26 25 24 47 47 H 1.09001 * 109.52398 * 62.29417 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 2.2458 -0.8545 3.5957 8 6 2.5581 -0.0805 4.7109 9 6 3.0924 -0.6683 5.8453 10 6 3.3205 -2.0255 5.8832 11 6 3.0099 -2.8203 4.7639 12 6 3.2419 -4.2149 4.7952 13 1 3.1085 -4.7640 5.7157 14 6 3.6441 -4.8835 3.6337 15 7 3.7216 -4.2358 2.4996 16 14 4.0703 -6.7010 3.7022 17 1 2.8492 -7.5058 3.4445 18 1 5.0929 -7.0088 2.6704 19 1 4.6075 -7.0331 5.0461 20 6 2.4623 -2.2197 3.6165 21 6 2.0400 -0.7214 -1.2492 22 6 3.5718 -0.7185 -1.2531 23 6 4.0722 -1.3700 -2.5451 24 8 3.5401 -0.6677 -3.6702 25 6 2.1130 -0.6793 -3.7437 26 6 1.5339 0.0020 -2.5010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8899 33 1 1.0956 0.4979 2.5447 34 1 2.3831 0.9851 4.6904 35 1 3.3306 -0.0591 6.7047 36 1 3.7378 -2.4794 6.7699 37 1 4.0007 -4.6991 1.6944 38 1 2.2160 -2.8213 2.7542 39 1 1.6772 -1.7492 -1.2504 40 1 3.9343 0.3082 -1.2004 41 1 3.9393 -1.2802 -0.3943 42 1 3.7445 -2.4091 -2.5772 43 1 5.1610 -1.3311 -2.5740 44 1 1.7598 -1.7093 -3.7915 45 1 1.7905 -0.1426 -4.6360 46 1 0.4455 -0.0448 -2.5339 47 1 1.8540 1.0436 -2.4742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456744185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:52 Heat of formation + Delta-G solvation = -71.300888 kcal Electronic energy + Delta-G solvation = -27892.872992 eV Core-core repulsion = 24232.861434 eV Total energy + Delta-G solvation = -3660.011559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.57036 -38.86723 -37.27850 -35.67144 -34.24457 -33.10844 -31.44417 -31.01768 -29.44565 -28.08529 -27.44363 -25.19030 -25.16113 -23.73541 -22.77049 -21.18755 -20.62225 -19.64200 -18.50973 -17.56830 -16.35282 -16.13825 -15.82721 -15.60805 -15.01457 -14.90783 -14.58268 -14.52658 -14.28685 -13.82858 -13.70565 -13.35404 -13.09915 -12.70014 -12.57960 -12.28253 -12.21263 -11.87634 -11.86813 -11.68896 -11.54462 -11.22252 -11.06801 -11.04139 -10.90574 -10.73523 -10.61621 -10.49475 -10.38619 -10.04103 -9.93596 -9.70462 -9.42525 -9.08009 -9.01084 -8.49062 -7.19724 -6.88905 -6.37046 -4.27738 2.71710 2.99921 3.16078 3.18447 3.25624 3.47429 3.79476 3.94884 4.07387 4.58660 4.75601 4.78726 4.83148 5.06174 5.06624 5.19598 5.27766 5.30294 5.42741 5.51991 5.59736 5.63874 5.71880 5.74481 5.76081 5.83149 5.87036 5.98609 6.01965 6.07942 6.16387 6.21973 6.27404 6.44491 6.54031 6.60160 6.76760 7.06318 7.13241 7.22659 7.28562 7.43871 7.67792 7.86771 7.92668 8.17366 8.34941 8.51629 8.69952 9.03177 9.06345 9.07773 10.44451 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.004670 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.753766 B = 5994.775135 C = 7616.670897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C -0.143 4.143 4 C 0.500 3.500 5 O -0.475 6.475 6 N -0.670 5.670 7 C 0.135 3.865 8 C -0.257 4.257 9 C -0.089 4.089 10 C -0.229 4.229 11 C 0.113 3.887 12 C -0.470 4.470 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.775 5.775 16 Si 0.907 3.093 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.146 4.146 21 C -0.059 4.059 22 C -0.163 4.163 23 C 0.063 3.937 24 O -0.389 6.389 25 C 0.062 3.938 26 C -0.154 4.154 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.392 0.608 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.277 0.723 38 H 0.152 0.848 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 8.833 -10.410 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.200 4.200 4 C 0.285 3.715 5 O -0.346 6.346 6 N -0.315 5.315 7 C 0.043 3.957 8 C -0.278 4.278 9 C -0.108 4.108 10 C -0.249 4.249 11 C 0.110 3.890 12 C -0.500 4.500 13 H 0.091 0.909 14 C -0.150 4.150 15 N -0.400 5.400 16 Si 0.732 3.268 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.189 1.189 20 C -0.167 4.167 21 C -0.078 4.078 22 C -0.200 4.200 23 C -0.013 4.013 24 O -0.308 6.308 25 C -0.015 4.015 26 C -0.191 4.191 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.226 0.774 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.169 0.831 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.948 8.165 -10.942 14.521 hybrid contribution -0.218 -0.422 0.373 0.604 sum -5.166 7.743 -10.568 14.083 Atomic orbital electron populations 1.21900 0.93079 1.02699 1.02255 1.20773 0.96649 0.96463 0.93922 1.21951 1.02069 0.93855 1.02101 1.20481 0.81546 0.85392 0.84062 1.90864 1.34944 1.23368 1.85446 1.43409 1.47559 1.35404 1.05109 1.17719 0.99861 0.92670 0.85448 1.20098 1.15112 0.96845 0.95767 1.20296 0.99661 0.94827 0.96037 1.21118 1.10133 0.93118 1.00509 1.17565 0.87675 0.93357 0.90359 1.19443 1.41823 0.92816 0.95965 0.90865 1.25903 0.94286 0.99728 0.95051 1.69869 1.34161 1.36571 0.99374 0.86341 0.78748 0.82850 0.78851 1.19748 1.20412 1.18902 1.21834 1.02269 0.91219 1.01422 1.20904 0.95934 0.99303 0.91665 1.22556 0.95281 1.02272 0.99931 1.22597 0.98612 0.94908 0.85226 1.87881 1.20104 1.76135 1.46718 1.22517 0.81512 0.99734 0.97703 1.22390 1.00768 1.00834 0.95157 0.92258 0.91544 0.91980 0.91716 0.91565 0.92391 0.77448 0.89513 0.89242 0.89032 0.91207 0.83119 0.90449 0.91754 0.87310 0.93207 0.89176 0.93443 0.89390 0.90908 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.02 37.16 0.30 -1.24 16 2 C -0.07 -0.98 0.43 -155.66 -0.07 -1.05 16 3 C -0.14 -1.61 7.67 37.15 0.29 -1.32 16 4 C 0.50 9.12 6.04 -10.99 -0.07 9.06 16 5 O -0.47 -10.72 11.08 5.55 0.06 -10.66 16 6 N -0.67 -12.31 5.11 -9.91 -0.05 -12.36 16 7 C 0.14 3.11 6.28 -83.76 -0.53 2.58 16 8 C -0.26 -5.63 9.97 -39.10 -0.39 -6.02 16 9 C -0.09 -2.01 10.02 -39.69 -0.40 -2.41 16 10 C -0.23 -5.72 9.79 -38.84 -0.38 -6.10 16 11 C 0.11 3.10 5.55 -106.85 -0.59 2.51 16 12 C -0.47 -12.87 9.04 -37.74 -0.34 -13.21 16 13 H 0.07 1.93 7.85 -52.48 -0.41 1.52 16 14 C 0.07 1.78 5.42 -17.35 -0.09 1.69 16 15 N -0.77 -20.98 10.55 55.55 0.59 -20.39 16 16 Si 0.91 19.66 29.56 -169.99 -5.03 14.63 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 19 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 20 C -0.15 -3.88 7.30 -38.69 -0.28 -4.16 16 21 C -0.06 -0.78 1.27 -90.43 -0.11 -0.90 16 22 C -0.16 -2.40 4.78 -26.58 -0.13 -2.53 16 23 C 0.06 0.86 6.84 37.21 0.25 1.11 16 24 O -0.39 -5.26 10.77 -35.23 -0.38 -5.64 16 25 C 0.06 0.67 6.84 37.21 0.25 0.93 16 26 C -0.15 -1.60 4.70 -26.59 -0.12 -1.73 16 27 H 0.06 0.59 7.47 -51.93 -0.39 0.20 16 28 H 0.07 0.58 6.51 -51.93 -0.34 0.24 16 29 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.06 0.81 6.37 -51.93 -0.33 0.48 16 31 H 0.07 0.62 6.37 -51.93 -0.33 0.29 16 32 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 33 H 0.39 5.76 7.68 -40.82 -0.31 5.45 16 34 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 37 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 38 H 0.15 4.27 4.35 -52.49 -0.23 4.04 16 39 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.06 0.91 6.28 -51.93 -0.33 0.59 16 41 H 0.11 2.00 5.62 -51.93 -0.29 1.71 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.64 6.63 -51.93 -0.34 0.30 16 47 H 0.07 0.75 6.28 -51.93 -0.33 0.43 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -30.36 358.72 -8.78 -39.14 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -6.97 Total: 12.67 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -2.41 Total: -22.80 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.54 Total: -32.75 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.32 Total: -16.30 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.36 -8.78 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456744185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.163 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds