Wall clock time and date at job start Tue Mar 31 2020 13:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47599 * 2 1 4 4 C 1.50700 * 109.47144 * 120.00103 * 2 1 3 5 5 O 1.21289 * 120.00053 * 119.99329 * 4 2 1 6 6 N 1.34775 * 120.00167 * 299.99825 * 4 2 1 7 7 C 1.39937 * 120.00344 * 184.31145 * 6 4 2 8 8 C 1.39292 * 119.94342 * 144.80744 * 7 6 4 9 9 C 1.38491 * 120.42450 * 180.02562 * 8 7 6 10 10 C 1.37679 * 120.32383 * 359.97438 * 9 8 7 11 11 C 1.40743 * 119.88387 * 0.02562 * 10 9 8 12 12 C 1.41410 * 120.20734 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99855 * 34.75217 * 12 11 10 14 14 C 1.39926 * 120.00047 * 214.74703 * 12 11 10 15 15 N 1.30832 * 120.00218 * 355.55753 * 14 12 11 16 16 Si 1.86802 * 120.00248 * 175.56071 * 14 12 11 17 17 H 1.48497 * 109.47234 * 89.99663 * 16 14 12 18 18 H 1.48494 * 109.47241 * 210.00061 * 16 14 12 19 19 H 1.48498 * 109.46914 * 330.00106 * 16 14 12 20 20 C 1.38242 * 119.94828 * 324.53512 * 7 6 4 21 21 C 1.53004 * 109.47041 * 239.99539 * 2 1 3 22 22 C 1.53181 * 109.54254 * 179.82238 * 21 2 1 23 23 C 1.53106 * 109.15682 * 183.24505 * 22 21 2 24 24 O 1.42906 * 109.48399 * 57.47591 * 23 22 21 25 25 C 1.42905 * 114.09778 * 298.88355 * 24 23 22 26 26 C 1.53097 * 109.41161 * 61.16338 * 25 24 23 27 27 H 1.09002 * 109.46847 * 300.00023 * 1 2 3 28 28 H 1.09004 * 109.47074 * 60.00057 * 1 2 3 29 29 H 1.09007 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47390 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47091 * 300.00575 * 3 2 1 32 32 H 1.08998 * 109.46784 * 59.99389 * 3 2 1 33 33 H 0.97003 * 119.99840 * 4.59157 * 6 4 2 34 34 H 1.07999 * 119.78891 * 359.97438 * 8 7 6 35 35 H 1.08002 * 119.83579 * 180.02562 * 9 8 7 36 36 H 1.08002 * 120.05821 * 179.97438 * 10 9 8 37 37 H 0.97002 * 120.00543 * 179.97438 * 15 14 12 38 38 H 1.07992 * 120.15794 * 359.97438 * 20 7 6 39 39 H 1.09000 * 109.54638 * 300.00546 * 21 2 1 40 40 H 1.09001 * 109.52398 * 303.05845 * 22 21 2 41 41 H 1.09003 * 109.52203 * 63.25349 * 22 21 2 42 42 H 1.08999 * 109.40661 * 297.49808 * 23 22 21 43 43 H 1.08990 * 109.49061 * 177.51022 * 23 22 21 44 44 H 1.08993 * 109.48428 * 301.17950 * 25 24 23 45 45 H 1.09003 * 109.48627 * 181.14476 * 25 24 23 46 46 H 1.09000 * 109.52101 * 182.47734 * 26 25 24 47 47 H 1.09001 * 109.52398 * 62.29417 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 2.2458 -0.8545 3.5957 8 6 2.5581 -0.0805 4.7109 9 6 3.0924 -0.6683 5.8453 10 6 3.3205 -2.0255 5.8832 11 6 3.0099 -2.8203 4.7639 12 6 3.2419 -4.2149 4.7952 13 1 3.1085 -4.7640 5.7157 14 6 3.6441 -4.8835 3.6337 15 7 3.7216 -4.2358 2.4996 16 14 4.0703 -6.7010 3.7022 17 1 2.8492 -7.5058 3.4445 18 1 5.0929 -7.0088 2.6704 19 1 4.6075 -7.0331 5.0461 20 6 2.4623 -2.2197 3.6165 21 6 2.0400 -0.7214 -1.2492 22 6 3.5718 -0.7185 -1.2531 23 6 4.0722 -1.3700 -2.5451 24 8 3.5401 -0.6677 -3.6702 25 6 2.1130 -0.6793 -3.7437 26 6 1.5339 0.0020 -2.5010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8899 33 1 1.0956 0.4979 2.5447 34 1 2.3831 0.9851 4.6904 35 1 3.3306 -0.0591 6.7047 36 1 3.7378 -2.4794 6.7699 37 1 4.0007 -4.6991 1.6944 38 1 2.2160 -2.8213 2.7542 39 1 1.6772 -1.7492 -1.2504 40 1 3.9343 0.3082 -1.2004 41 1 3.9393 -1.2802 -0.3943 42 1 3.7445 -2.4091 -2.5772 43 1 5.1610 -1.3311 -2.5740 44 1 1.7598 -1.7093 -3.7915 45 1 1.7905 -0.1426 -4.6360 46 1 0.4455 -0.0448 -2.5339 47 1 1.8540 1.0436 -2.4742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456744185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:51 Heat of formation + Delta-G solvation = -89.330419 kcal Electronic energy + Delta-G solvation = -27893.654811 eV Core-core repulsion = 24232.861434 eV Total energy + Delta-G solvation = -3660.793378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.84780 -40.17636 -38.91004 -36.91624 -35.98795 -34.92006 -32.58889 -31.99910 -31.36209 -29.82258 -28.32820 -27.15344 -26.18762 -24.84318 -24.06487 -22.91041 -22.21136 -21.02813 -19.89014 -19.26769 -17.77039 -17.44613 -17.07588 -16.89209 -16.59906 -16.44888 -16.07726 -15.88381 -15.49872 -15.11762 -14.82341 -14.67521 -14.56307 -14.27491 -14.12085 -13.59175 -13.42004 -13.23736 -13.05108 -12.83822 -12.81902 -12.79106 -12.66021 -12.56396 -12.24017 -12.21348 -11.87245 -11.85448 -11.64220 -11.57927 -11.44805 -11.05987 -11.01536 -10.74109 -10.46809 -10.01683 -9.14005 -8.71141 -8.29066 -6.33203 0.90737 1.15921 1.34953 1.45217 1.50739 1.96775 2.23852 2.37830 2.88159 2.97313 3.54478 3.67463 3.74282 3.77531 4.10807 4.13592 4.16880 4.23170 4.31598 4.39570 4.50502 4.63121 4.69564 4.71012 4.75169 4.78167 4.86763 4.89628 4.90512 4.91300 5.01829 5.09676 5.12380 5.18866 5.22185 5.26850 5.30247 5.35091 5.48852 5.50732 5.53169 5.92358 5.97423 6.03170 6.25232 6.27225 6.50712 6.75189 6.84198 7.04808 7.11715 7.58408 8.49096 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.004670 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.753766 B = 5994.775135 C = 7616.670897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.140 4.140 4 C 0.490 3.510 5 O -0.522 6.522 6 N -0.662 5.662 7 C 0.137 3.863 8 C -0.247 4.247 9 C -0.088 4.088 10 C -0.248 4.248 11 C 0.078 3.922 12 C -0.508 4.508 13 H 0.070 0.930 14 C 0.023 3.977 15 N -0.806 5.806 16 Si 0.978 3.022 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.259 1.259 20 C -0.176 4.176 21 C -0.058 4.058 22 C -0.158 4.158 23 C 0.067 3.933 24 O -0.399 6.399 25 C 0.053 3.947 26 C -0.143 4.143 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.413 0.587 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.275 0.725 38 H 0.126 0.874 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.117 0.883 46 H 0.098 0.902 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.045 11.560 -11.351 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.197 4.197 4 C 0.277 3.723 5 O -0.396 6.396 6 N -0.308 5.308 7 C 0.043 3.957 8 C -0.268 4.268 9 C -0.107 4.107 10 C -0.268 4.268 11 C 0.075 3.925 12 C -0.539 4.539 13 H 0.088 0.912 14 C -0.191 4.191 15 N -0.431 5.431 16 Si 0.800 3.200 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.198 4.198 21 C -0.077 4.077 22 C -0.196 4.196 23 C -0.009 4.009 24 O -0.318 6.318 25 C -0.023 4.023 26 C -0.181 4.181 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.250 0.750 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.143 0.857 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.112 0.888 44 H 0.063 0.937 45 H 0.135 0.865 46 H 0.117 0.883 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.372 10.937 -11.881 17.360 hybrid contribution 0.182 -1.129 0.682 1.332 sum -6.190 9.808 -11.199 16.122 Atomic orbital electron populations 1.21940 0.90742 1.02388 1.04627 1.20760 0.98270 0.96942 0.90611 1.21976 1.01021 0.92316 1.04352 1.21590 0.80504 0.84903 0.85267 1.90878 1.36909 1.25665 1.86165 1.43365 1.47691 1.35677 1.04070 1.17868 0.98739 0.91833 0.87252 1.20564 1.12904 0.98675 0.94698 1.20726 0.98305 0.94081 0.97541 1.21315 1.10911 0.94509 1.00076 1.17948 0.88723 0.94086 0.91725 1.19686 1.44025 0.93685 0.96530 0.91184 1.26741 0.93762 1.04250 0.94329 1.70033 1.35141 1.38155 0.99781 0.85260 0.78667 0.77088 0.78969 1.18929 1.19867 1.18282 1.21708 1.04376 0.92955 1.00716 1.20879 0.94686 0.98497 0.93632 1.22412 0.96737 1.01789 0.98632 1.22482 0.98939 0.94352 0.85161 1.87867 1.21928 1.75912 1.46120 1.22798 0.80052 1.00320 0.99167 1.22357 1.02177 1.00736 0.92787 0.90926 0.88148 0.93684 0.93453 0.88504 0.90971 0.75000 0.85480 0.85416 0.88603 0.91447 0.85659 0.93212 0.91112 0.91669 0.94231 0.88840 0.93669 0.86524 0.88341 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.02 71.98 0.58 -2.06 16 2 C -0.06 -1.55 0.43 -52.93 -0.02 -1.57 16 3 C -0.14 -2.70 7.67 71.98 0.55 -2.15 16 4 C 0.49 18.14 6.04 87.66 0.53 18.67 16 5 O -0.52 -25.11 11.08 -3.06 -0.03 -25.14 16 6 N -0.66 -23.82 5.11 -303.65 -1.55 -25.37 16 7 C 0.14 6.30 6.28 38.10 0.24 6.54 16 8 C -0.25 -10.32 9.97 22.58 0.23 -10.10 16 9 C -0.09 -3.82 10.02 22.20 0.22 -3.59 16 10 C -0.25 -12.61 9.79 22.75 0.22 -12.39 16 11 C 0.08 4.46 5.55 -21.31 -0.12 4.34 16 12 C -0.51 -29.43 9.04 23.46 0.21 -29.22 16 13 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 14 C 0.02 1.29 5.42 85.25 0.46 1.75 16 15 N -0.81 -46.54 10.55 21.82 0.23 -46.31 16 16 Si 0.98 42.17 29.56 68.60 2.03 44.20 16 17 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 20 C -0.18 -9.78 7.30 22.85 0.17 -9.61 16 21 C -0.06 -1.51 1.27 -10.67 -0.01 -1.52 16 22 C -0.16 -4.81 4.78 30.69 0.15 -4.66 16 23 C 0.07 1.89 6.84 72.02 0.49 2.38 16 24 O -0.40 -10.32 10.77 -148.98 -1.60 -11.93 16 25 C 0.05 1.02 6.84 72.01 0.49 1.51 16 26 C -0.14 -2.54 4.70 30.69 0.14 -2.39 16 27 H 0.07 1.19 7.47 -2.39 -0.02 1.17 16 28 H 0.10 1.24 6.51 -2.38 -0.02 1.23 16 29 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.05 1.10 6.37 -2.39 -0.02 1.08 16 31 H 0.10 1.32 6.37 -2.38 -0.02 1.31 16 32 H 0.07 1.21 7.67 -2.39 -0.02 1.19 16 33 H 0.41 11.09 7.68 -92.71 -0.71 10.38 16 34 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 35 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 36 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.28 15.02 8.30 -92.71 -0.77 14.25 16 38 H 0.13 7.61 4.35 -2.91 -0.01 7.59 16 39 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 40 H 0.07 2.01 6.28 -2.39 -0.01 1.99 16 41 H 0.06 2.60 5.62 -2.39 -0.01 2.59 16 42 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.10 1.28 6.63 -2.39 -0.02 1.27 16 47 H 0.09 1.37 6.28 -2.39 -0.01 1.36 16 Total: -1.00 -72.30 358.72 3.88 -68.42 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: 0.28 Total: 40.20 kcal Atomic # 6 Polarization: -48.61 SS G_CDS: 4.53 Total: -44.08 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -1.32 Total: -71.68 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -1.64 Total: -37.07 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -72.30 3.88 -68.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456744185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.910 kcal (2) G-P(sol) polarization free energy of solvation -72.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds