Wall clock time and date at job start Tue Mar 31 2020 13:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 C 1.53003 * 109.46829 * 119.99842 * 2 1 3 5 5 C 1.53004 * 109.47161 * 305.00085 * 4 2 1 6 6 C 1.53002 * 109.47108 * 184.99831 * 4 2 1 7 7 N 1.46503 * 109.47113 * 65.00270 * 4 2 1 8 8 C 1.34779 * 120.00015 * 180.02562 * 7 4 2 9 9 O 1.21718 * 119.99886 * 359.97438 * 8 7 4 10 10 C 1.46247 * 120.00078 * 179.97438 * 8 7 4 11 11 C 1.35019 * 120.00244 * 179.97438 * 10 8 7 12 12 C 1.46960 * 120.00391 * 179.97438 * 11 10 8 13 13 C 1.40026 * 120.10276 * 179.97438 * 12 11 10 14 14 C 1.37594 * 119.89669 * 180.02562 * 13 12 11 15 15 C 1.39186 * 120.10270 * 0.25827 * 14 13 12 16 16 O 1.35570 * 119.89533 * 179.72239 * 15 14 13 17 17 C 1.34778 * 117.00452 * 354.44371 * 16 15 14 18 18 H 1.08005 * 119.99749 * 5.06251 * 17 16 15 19 19 C 1.38712 * 120.00163 * 185.05579 * 17 16 15 20 20 N 1.31511 * 120.00210 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00313 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46923 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46924 * 119.99882 * 21 19 17 24 24 H 1.48496 * 109.47349 * 240.00178 * 21 19 17 25 25 C 1.39173 * 120.19870 * 359.49053 * 15 14 13 26 26 C 1.37597 * 120.10372 * 0.50460 * 25 15 14 27 27 H 1.08994 * 109.47003 * 59.99881 * 1 2 3 28 28 H 1.09000 * 109.47357 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47524 * 300.00192 * 1 2 3 30 30 H 1.08994 * 109.47189 * 239.99777 * 2 1 3 31 31 H 1.08999 * 109.46877 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47360 * 299.99900 * 3 2 1 33 33 H 1.09010 * 109.47197 * 60.00227 * 3 2 1 34 34 H 1.09004 * 109.46794 * 179.97438 * 5 4 2 35 35 H 1.08997 * 109.46879 * 299.99864 * 5 4 2 36 36 H 1.08999 * 109.47087 * 60.00345 * 5 4 2 37 37 H 1.09000 * 109.47219 * 300.00248 * 6 4 2 38 38 H 1.09010 * 109.46605 * 60.00115 * 6 4 2 39 39 H 1.08996 * 109.47057 * 179.97438 * 6 4 2 40 40 H 0.96995 * 120.00073 * 359.97438 * 7 4 2 41 41 H 1.08003 * 119.99859 * 359.97438 * 10 8 7 42 42 H 1.08003 * 119.99897 * 359.97438 * 11 10 8 43 43 H 1.07997 * 120.04753 * 0.02562 * 13 12 11 44 44 H 1.08001 * 119.95149 * 179.97438 * 14 13 12 45 45 H 0.96998 * 120.00620 * 179.97438 * 20 19 17 46 46 H 1.08004 * 119.94780 * 180.26075 * 25 15 14 47 47 H 1.08000 * 120.05081 * 179.76535 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4298 -0.0762 2.4954 6 6 3.5648 -0.6133 1.3138 7 7 1.6524 -2.1329 1.1906 8 6 1.9955 -2.9680 2.1913 9 8 2.6277 -2.5496 3.1435 10 6 1.6081 -4.3771 2.1330 11 6 1.9522 -5.2139 3.1351 12 6 1.5625 -6.6297 3.0769 13 6 1.9187 -7.4995 4.1148 14 6 1.5521 -8.8243 4.0556 15 6 0.8329 -9.3015 2.9637 16 8 0.4787 -10.6089 2.9070 17 6 0.9512 -11.4137 3.8795 18 1 1.5134 -10.9950 4.7011 19 6 0.7154 -12.7795 3.8251 20 7 0.0311 -13.2893 2.8244 21 14 1.3709 -13.8950 5.1725 22 1 2.1026 -13.0813 6.1764 23 1 0.2380 -14.5927 5.8322 24 1 2.2925 -14.8976 4.5805 25 6 0.4722 -8.4396 1.9323 26 6 0.8343 -7.1131 1.9829 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9564 0.8901 34 1 1.7928 -0.5904 3.3853 35 1 1.7182 0.9740 2.5390 36 1 0.3435 -0.1532 2.4494 37 1 3.9994 -1.0729 0.4261 38 1 3.8531 0.4370 1.3574 39 1 3.9280 -1.1268 2.2040 40 1 1.1483 -2.4663 0.4320 41 1 1.0468 -4.7483 1.2882 42 1 2.5139 -4.8428 3.9797 43 1 2.4804 -7.1309 4.9604 44 1 1.8268 -9.4960 4.8555 45 1 -0.1335 -14.2445 2.7861 46 1 -0.0896 -8.8133 1.0889 47 1 0.5572 -6.4458 1.1802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492821835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:27 Heat of formation + Delta-G solvation = -38.088062 kcal Electronic energy + Delta-G solvation = -25363.079656 eV Core-core repulsion = 21704.508314 eV Total energy + Delta-G solvation = -3658.571342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.32099 -39.18210 -37.75283 -36.80770 -33.31949 -33.18801 -32.30050 -30.73044 -30.42031 -28.35213 -27.94065 -26.70816 -25.68249 -24.12182 -22.76023 -22.11438 -20.64579 -19.40967 -18.94704 -18.14490 -17.16634 -17.07266 -16.22762 -15.13865 -14.93111 -14.79225 -14.74566 -14.45634 -14.36020 -13.99852 -13.82131 -13.59261 -13.48468 -13.19448 -13.02801 -12.67188 -12.57594 -12.38271 -11.96286 -11.92558 -11.88183 -11.72214 -11.70511 -11.49807 -11.33197 -11.14642 -11.05678 -10.90001 -10.73224 -10.63814 -10.52834 -9.57851 -9.49351 -9.46377 -9.05628 -8.84304 -8.37910 -7.10529 -6.65091 -4.19981 1.09828 2.13744 2.58145 3.03666 3.04794 3.10491 3.24704 3.62532 3.82236 4.32766 4.50634 4.52762 4.67673 4.92392 4.95899 5.02417 5.05148 5.09802 5.19498 5.28481 5.31523 5.48182 5.52270 5.53919 5.55165 5.60279 5.65924 5.67834 5.69413 5.76876 5.79713 5.89965 5.93069 6.01795 6.12598 6.22695 6.30444 6.46192 6.51511 6.58360 6.64974 6.79910 6.92771 7.13713 7.24283 7.29032 7.64293 7.65541 7.80455 8.43232 8.79894 9.47058 10.51674 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.001931 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.159705 B =14494.499355 C =14960.259018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.148 4.148 4 C 0.180 3.820 5 C -0.166 4.166 6 C -0.166 4.166 7 N -0.726 5.726 8 C 0.558 3.442 9 O -0.554 6.554 10 C -0.283 4.283 11 C 0.036 3.964 12 C -0.198 4.198 13 C -0.036 4.036 14 C -0.242 4.242 15 C 0.167 3.833 16 O -0.163 6.163 17 C -0.393 4.393 18 H 0.098 0.902 19 C 0.041 3.959 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.200 4.200 26 C -0.043 4.043 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.397 0.603 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.131 0.869 45 H 0.273 0.727 46 H 0.120 0.880 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 22.874 -4.786 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.205 4.205 4 C 0.094 3.906 5 C -0.224 4.224 6 C -0.223 4.223 7 N -0.378 5.378 8 C 0.350 3.650 9 O -0.435 6.435 10 C -0.304 4.304 11 C 0.017 3.983 12 C -0.199 4.199 13 C -0.054 4.054 14 C -0.261 4.261 15 C 0.110 3.890 16 O -0.064 6.064 17 C -0.468 4.468 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.485 5.485 21 Si 0.769 3.231 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.219 4.219 26 C -0.062 4.062 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.231 0.769 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.149 0.851 45 H 0.083 0.917 46 H 0.138 0.862 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.577 22.776 -4.359 23.332 hybrid contribution 0.001 -0.799 0.168 0.816 sum 2.578 21.977 -4.190 22.521 Atomic orbital electron populations 1.21939 0.94803 1.02060 1.02092 1.21349 0.96253 0.96853 0.97238 1.21927 1.01472 0.95082 1.02059 1.20239 0.94689 0.80528 0.95144 1.22316 1.00715 1.00451 0.98906 1.22291 0.94581 1.02080 1.03397 1.46028 1.58661 1.09061 1.24032 1.18336 0.78459 0.86485 0.81681 1.90703 1.41032 1.78154 1.33643 1.22482 1.11877 0.92668 1.03352 1.22267 0.89480 0.91277 0.95316 1.18474 1.09986 0.92718 0.98710 1.20988 0.95544 0.92650 0.96214 1.21105 1.07620 0.96294 1.01116 1.19614 0.90986 0.85623 0.92744 1.83902 1.61351 1.13637 1.47522 1.21522 1.35091 0.87962 1.02244 0.88492 1.25396 0.96431 0.96361 0.98319 1.70021 1.35465 1.13657 1.29370 0.85582 0.78727 0.79508 0.79287 1.18859 1.19929 1.19914 1.20149 1.08924 0.92964 0.99860 1.20877 0.94983 0.94091 0.96204 0.92593 0.92535 0.91974 0.90764 0.92025 0.92494 0.92141 0.90306 0.92096 0.92470 0.92930 0.91874 0.90212 0.76858 0.86092 0.85965 0.86834 0.85127 0.91658 0.86155 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.58 37.16 0.32 -0.66 16 2 C -0.10 -0.68 2.32 -90.62 -0.21 -0.89 16 3 C -0.15 -0.89 8.46 37.16 0.31 -0.57 16 4 C 0.18 1.67 0.53 -131.81 -0.07 1.60 16 5 C -0.17 -1.65 7.67 37.16 0.28 -1.37 16 6 C -0.17 -1.66 7.91 37.16 0.29 -1.36 16 7 N -0.73 -7.48 4.83 -49.03 -0.24 -7.71 16 8 C 0.56 7.59 7.15 -13.04 -0.09 7.50 16 9 O -0.55 -9.08 12.43 5.17 0.06 -9.01 16 10 C -0.28 -3.84 9.41 -37.51 -0.35 -4.19 16 11 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 12 C -0.20 -3.38 5.87 -105.03 -0.62 -4.00 16 13 C -0.04 -0.64 9.78 -39.15 -0.38 -1.02 16 14 C -0.24 -5.03 9.14 -39.46 -0.36 -5.39 16 15 C 0.17 3.84 6.66 -38.88 -0.26 3.58 16 16 O -0.16 -4.43 9.74 0.75 0.01 -4.43 16 17 C -0.39 -10.45 9.48 30.91 0.29 -10.16 16 18 H 0.10 2.38 5.18 -52.48 -0.27 2.11 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.85 -23.88 13.67 55.48 0.76 -23.13 16 21 Si 0.94 19.57 29.55 -169.99 -5.02 14.55 16 22 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.20 -4.00 9.97 -39.47 -0.39 -4.40 16 26 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.37 7.18 -51.93 -0.37 0.00 16 29 H 0.06 0.42 6.35 -51.93 -0.33 0.09 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.37 6.34 -51.93 -0.33 0.04 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.36 6.57 -51.92 -0.34 0.02 16 34 H 0.08 1.01 6.16 -51.93 -0.32 0.69 16 35 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 36 H 0.06 0.54 6.34 -51.93 -0.33 0.21 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.52 6.35 -51.92 -0.33 0.19 16 39 H 0.08 1.03 6.16 -51.93 -0.32 0.71 16 40 H 0.40 3.24 7.63 -40.82 -0.31 2.93 16 41 H 0.12 1.43 6.07 -52.48 -0.32 1.11 16 42 H 0.12 1.84 7.52 -52.48 -0.39 1.45 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.13 2.69 5.62 -52.49 -0.29 2.40 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 47 H 0.12 1.64 6.16 -52.49 -0.32 1.31 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -29.92 372.02 -7.47 -37.39 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.60 Total: 7.99 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.05 Total: -21.26 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.52 Total: -30.84 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.07 Total: -13.44 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.92 -7.47 -37.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492821835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.695 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds