Wall clock time and date at job start Tue Mar 31 2020 13:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 C 1.53003 * 109.46829 * 119.99842 * 2 1 3 5 5 C 1.53004 * 109.47161 * 305.00085 * 4 2 1 6 6 C 1.53002 * 109.47108 * 184.99831 * 4 2 1 7 7 N 1.46503 * 109.47113 * 65.00270 * 4 2 1 8 8 C 1.34779 * 120.00015 * 180.02562 * 7 4 2 9 9 O 1.21718 * 119.99886 * 359.97438 * 8 7 4 10 10 C 1.46247 * 120.00078 * 179.97438 * 8 7 4 11 11 C 1.35019 * 120.00244 * 179.97438 * 10 8 7 12 12 C 1.46960 * 120.00391 * 179.97438 * 11 10 8 13 13 C 1.40026 * 120.10276 * 179.97438 * 12 11 10 14 14 C 1.37594 * 119.89669 * 180.02562 * 13 12 11 15 15 C 1.39186 * 120.10270 * 0.25827 * 14 13 12 16 16 O 1.35570 * 119.89533 * 179.72239 * 15 14 13 17 17 C 1.34778 * 117.00452 * 354.44371 * 16 15 14 18 18 H 1.08005 * 119.99749 * 5.06251 * 17 16 15 19 19 C 1.38712 * 120.00163 * 185.05579 * 17 16 15 20 20 N 1.31511 * 120.00210 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00313 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46923 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46924 * 119.99882 * 21 19 17 24 24 H 1.48496 * 109.47349 * 240.00178 * 21 19 17 25 25 C 1.39173 * 120.19870 * 359.49053 * 15 14 13 26 26 C 1.37597 * 120.10372 * 0.50460 * 25 15 14 27 27 H 1.08994 * 109.47003 * 59.99881 * 1 2 3 28 28 H 1.09000 * 109.47357 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47524 * 300.00192 * 1 2 3 30 30 H 1.08994 * 109.47189 * 239.99777 * 2 1 3 31 31 H 1.08999 * 109.46877 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47360 * 299.99900 * 3 2 1 33 33 H 1.09010 * 109.47197 * 60.00227 * 3 2 1 34 34 H 1.09004 * 109.46794 * 179.97438 * 5 4 2 35 35 H 1.08997 * 109.46879 * 299.99864 * 5 4 2 36 36 H 1.08999 * 109.47087 * 60.00345 * 5 4 2 37 37 H 1.09000 * 109.47219 * 300.00248 * 6 4 2 38 38 H 1.09010 * 109.46605 * 60.00115 * 6 4 2 39 39 H 1.08996 * 109.47057 * 179.97438 * 6 4 2 40 40 H 0.96995 * 120.00073 * 359.97438 * 7 4 2 41 41 H 1.08003 * 119.99859 * 359.97438 * 10 8 7 42 42 H 1.08003 * 119.99897 * 359.97438 * 11 10 8 43 43 H 1.07997 * 120.04753 * 0.02562 * 13 12 11 44 44 H 1.08001 * 119.95149 * 179.97438 * 14 13 12 45 45 H 0.96998 * 120.00620 * 179.97438 * 20 19 17 46 46 H 1.08004 * 119.94780 * 180.26075 * 25 15 14 47 47 H 1.08000 * 120.05081 * 179.76535 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4298 -0.0762 2.4954 6 6 3.5648 -0.6133 1.3138 7 7 1.6524 -2.1329 1.1906 8 6 1.9955 -2.9680 2.1913 9 8 2.6277 -2.5496 3.1435 10 6 1.6081 -4.3771 2.1330 11 6 1.9522 -5.2139 3.1351 12 6 1.5625 -6.6297 3.0769 13 6 1.9187 -7.4995 4.1148 14 6 1.5521 -8.8243 4.0556 15 6 0.8329 -9.3015 2.9637 16 8 0.4787 -10.6089 2.9070 17 6 0.9512 -11.4137 3.8795 18 1 1.5134 -10.9950 4.7011 19 6 0.7154 -12.7795 3.8251 20 7 0.0311 -13.2893 2.8244 21 14 1.3709 -13.8950 5.1725 22 1 2.1026 -13.0813 6.1764 23 1 0.2380 -14.5927 5.8322 24 1 2.2925 -14.8976 4.5805 25 6 0.4722 -8.4396 1.9323 26 6 0.8343 -7.1131 1.9829 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9564 0.8901 34 1 1.7928 -0.5904 3.3853 35 1 1.7182 0.9740 2.5390 36 1 0.3435 -0.1532 2.4494 37 1 3.9994 -1.0729 0.4261 38 1 3.8531 0.4370 1.3574 39 1 3.9280 -1.1268 2.2040 40 1 1.1483 -2.4663 0.4320 41 1 1.0468 -4.7483 1.2882 42 1 2.5139 -4.8428 3.9797 43 1 2.4804 -7.1309 4.9604 44 1 1.8268 -9.4960 4.8555 45 1 -0.1335 -14.2445 2.7861 46 1 -0.0896 -8.8133 1.0889 47 1 0.5572 -6.4458 1.1802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492821835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:26 Heat of formation + Delta-G solvation = -55.204201 kcal Electronic energy + Delta-G solvation = -25363.821868 eV Core-core repulsion = 21704.508314 eV Total energy + Delta-G solvation = -3659.313554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.28385 -40.80694 -38.81468 -38.25879 -34.72681 -34.21488 -33.93352 -31.97218 -31.54404 -29.58588 -28.79143 -27.55287 -27.30106 -25.18831 -23.93467 -23.53648 -21.91225 -20.60613 -19.99146 -19.56053 -18.80850 -18.25927 -17.12998 -16.48336 -16.41622 -15.96955 -15.81369 -15.68395 -15.59205 -15.38885 -14.96817 -14.87600 -14.59953 -14.30505 -14.10041 -13.81935 -13.60557 -13.37849 -13.31849 -13.12106 -13.07826 -12.75407 -12.64439 -12.55589 -12.52570 -12.19661 -12.15212 -12.10831 -11.91074 -11.55488 -11.36976 -11.21168 -11.10352 -10.55793 -10.54035 -9.97377 -9.89457 -8.67126 -8.52588 -6.18667 -0.21967 0.58200 1.16065 1.35570 1.45157 1.53492 2.14836 2.33107 2.43478 2.86671 3.17844 3.42356 3.65886 3.86358 3.91742 3.95201 4.06721 4.08525 4.29922 4.32986 4.36856 4.44132 4.48063 4.60901 4.66660 4.79577 4.79884 4.87481 4.94683 4.96369 4.99756 5.03422 5.05905 5.07931 5.17641 5.19702 5.26033 5.31077 5.34224 5.36492 5.52372 5.58781 5.60103 5.63772 5.73690 5.82778 5.97291 6.10602 6.72887 6.91924 7.40079 7.69212 8.69732 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.001931 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.159705 B =14494.499355 C =14960.259018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.148 4.148 4 C 0.176 3.824 5 C -0.162 4.162 6 C -0.163 4.163 7 N -0.711 5.711 8 C 0.551 3.449 9 O -0.582 6.582 10 C -0.246 4.246 11 C 0.012 3.988 12 C -0.169 4.169 13 C -0.042 4.042 14 C -0.249 4.249 15 C 0.129 3.871 16 O -0.220 6.220 17 C -0.416 4.416 18 H 0.105 0.895 19 C -0.019 4.019 20 N -0.914 5.914 21 Si 1.019 2.981 22 H -0.251 1.251 23 H -0.268 1.268 24 H -0.268 1.268 25 C -0.207 4.207 26 C -0.038 4.038 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.411 0.589 41 H 0.148 0.852 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.124 0.876 45 H 0.275 0.725 46 H 0.123 0.877 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 26.611 -5.570 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.206 4.206 4 C 0.090 3.910 5 C -0.220 4.220 6 C -0.221 4.221 7 N -0.362 5.362 8 C 0.342 3.658 9 O -0.464 6.464 10 C -0.266 4.266 11 C -0.008 4.008 12 C -0.170 4.170 13 C -0.060 4.060 14 C -0.268 4.268 15 C 0.077 3.923 16 O -0.125 6.125 17 C -0.492 4.492 18 H 0.123 0.877 19 C -0.218 4.218 20 N -0.551 5.551 21 Si 0.838 3.162 22 H -0.174 1.174 23 H -0.193 1.193 24 H -0.193 1.193 25 C -0.226 4.226 26 C -0.056 4.056 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.248 0.752 41 H 0.166 0.834 42 H 0.142 0.858 43 H 0.161 0.839 44 H 0.142 0.858 45 H 0.084 0.916 46 H 0.141 0.859 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.146 26.601 -5.167 27.280 hybrid contribution -0.095 -1.259 0.274 1.292 sum 3.051 25.342 -4.893 25.990 Atomic orbital electron populations 1.21946 0.94260 1.02197 1.02504 1.21310 0.96601 0.97148 0.95900 1.21940 1.01542 0.94421 1.02676 1.20398 0.94357 0.79940 0.96257 1.22265 1.00883 1.01092 0.97780 1.22250 0.95009 1.02840 1.01968 1.45974 1.57488 1.09320 1.23411 1.18432 0.78512 0.86843 0.82032 1.90723 1.42176 1.78616 1.34926 1.22839 1.08640 0.92416 1.02719 1.22141 0.91672 0.90237 0.96724 1.18798 1.07099 0.93549 0.97544 1.21312 0.95543 0.91481 0.97633 1.21200 1.07568 0.97580 1.00440 1.20184 0.92475 0.85088 0.94552 1.83883 1.64406 1.15328 1.48893 1.21933 1.35762 0.88701 1.02781 0.87734 1.26611 0.96633 0.97654 1.00888 1.70151 1.38694 1.13989 1.32244 0.84522 0.78217 0.77208 0.76251 1.17434 1.19288 1.19309 1.20421 1.08892 0.93959 0.99322 1.21276 0.93883 0.93248 0.97200 0.91444 0.92535 0.92380 0.90001 0.91964 0.91333 0.92148 0.93398 0.90573 0.92029 0.92560 0.90231 0.93277 0.75240 0.83437 0.85818 0.83888 0.85810 0.91595 0.85923 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.58 71.98 0.62 -0.79 16 2 C -0.09 -0.93 2.32 -10.79 -0.03 -0.95 16 3 C -0.15 -1.26 8.46 71.98 0.61 -0.66 16 4 C 0.18 2.75 0.53 3.61 0.00 2.76 16 5 C -0.16 -2.87 7.67 71.98 0.55 -2.31 16 6 C -0.16 -2.88 7.91 71.98 0.57 -2.31 16 7 N -0.71 -12.13 4.83 -427.23 -2.06 -14.19 16 8 C 0.55 13.24 7.15 86.32 0.62 13.86 16 9 O -0.58 -17.98 12.43 -4.41 -0.05 -18.03 16 10 C -0.25 -5.61 9.41 23.61 0.22 -5.39 16 11 C 0.01 0.33 9.45 23.82 0.23 0.55 16 12 C -0.17 -5.30 5.87 -20.13 -0.12 -5.42 16 13 C -0.04 -1.43 9.78 22.55 0.22 -1.21 16 14 C -0.25 -10.52 9.14 22.35 0.20 -10.31 16 15 C 0.13 6.18 6.66 22.72 0.15 6.33 16 16 O -0.22 -12.79 9.74 -20.23 -0.20 -12.99 16 17 C -0.42 -23.51 9.48 67.93 0.64 -22.86 16 18 H 0.11 5.42 5.18 -2.91 -0.02 5.40 16 19 C -0.02 -1.06 5.49 84.85 0.47 -0.60 16 20 N -0.91 -54.53 13.67 21.62 0.30 -54.23 16 21 Si 1.02 41.69 29.55 68.60 2.03 43.72 16 22 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 25 C -0.21 -8.28 9.97 22.34 0.22 -8.06 16 26 C -0.04 -1.21 9.40 22.55 0.21 -0.99 16 27 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.52 7.18 -2.39 -0.02 0.50 16 29 H 0.06 0.60 6.35 -2.39 -0.02 0.58 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.53 6.34 -2.39 -0.02 0.52 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.53 6.57 -2.38 -0.02 0.51 16 34 H 0.05 1.17 6.16 -2.38 -0.01 1.15 16 35 H 0.08 1.09 6.56 -2.39 -0.02 1.07 16 36 H 0.06 1.02 6.34 -2.39 -0.02 1.00 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.12 6.35 -2.38 -0.02 1.11 16 39 H 0.05 1.20 6.16 -2.39 -0.01 1.18 16 40 H 0.41 4.86 7.63 -92.71 -0.71 4.16 16 41 H 0.15 2.59 6.07 -2.91 -0.02 2.57 16 42 H 0.12 3.39 7.52 -2.91 -0.02 3.37 16 43 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 44 H 0.12 5.30 5.62 -2.91 -0.02 5.29 16 45 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 46 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 47 H 0.16 3.62 6.16 -2.91 -0.02 3.60 16 Total: -1.00 -70.75 372.02 5.69 -65.06 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.29 Total: 29.04 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 5.39 Total: -38.37 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.77 Total: -68.43 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.25 Total: -31.02 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -70.75 5.69 -65.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492821835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.851 kcal (2) G-P(sol) polarization free energy of solvation -70.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds