Wall clock time and date at job start Tue Mar 31 2020 13:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47648 * 2 1 4 4 C 1.53005 * 109.46784 * 120.00440 * 2 1 3 5 5 C 1.52997 * 109.47284 * 54.99539 * 4 2 1 6 6 C 1.52997 * 109.46748 * 294.99434 * 4 2 1 7 7 N 1.46505 * 109.46763 * 174.99953 * 4 2 1 8 8 C 1.34776 * 119.99558 * 179.97438 * 7 4 2 9 9 O 1.21716 * 120.00449 * 0.02562 * 8 7 4 10 10 C 1.46257 * 119.99687 * 180.27187 * 8 7 4 11 11 C 1.35025 * 119.99972 * 172.94502 * 10 8 7 12 12 C 1.46960 * 119.99958 * 348.68276 * 11 10 8 13 13 C 1.40028 * 120.10009 * 316.39463 * 12 11 10 14 14 C 1.37594 * 119.89791 * 179.76287 * 13 12 11 15 15 C 1.39181 * 120.10136 * 0.51574 * 14 13 12 16 16 O 1.35570 * 119.89914 * 179.75998 * 15 14 13 17 17 C 1.34783 * 116.99886 * 174.33499 * 16 15 14 18 18 H 1.07998 * 119.99829 * 5.06153 * 17 16 15 19 19 C 1.38721 * 119.99912 * 185.05607 * 17 16 15 20 20 N 1.31504 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99732 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47291 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46914 * 120.00744 * 21 19 17 24 24 H 1.48506 * 109.46956 * 240.00440 * 21 19 17 25 25 C 1.39177 * 120.19912 * 359.73891 * 15 14 13 26 26 C 1.37596 * 120.10326 * 359.97438 * 25 15 14 27 27 H 1.08998 * 109.46675 * 300.00204 * 1 2 3 28 28 H 1.09005 * 109.46788 * 60.00073 * 1 2 3 29 29 H 1.08992 * 109.47245 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46995 * 239.99396 * 2 1 3 31 31 H 1.09001 * 109.47415 * 59.99653 * 3 2 1 32 32 H 1.09001 * 109.47436 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46927 * 300.00250 * 3 2 1 34 34 H 1.08999 * 109.46810 * 179.97438 * 5 4 2 35 35 H 1.08998 * 109.47004 * 299.99613 * 5 4 2 36 36 H 1.08999 * 109.47007 * 60.00591 * 5 4 2 37 37 H 1.09002 * 109.47276 * 300.00074 * 6 4 2 38 38 H 1.08998 * 109.47599 * 60.00351 * 6 4 2 39 39 H 1.08999 * 109.46874 * 180.02562 * 6 4 2 40 40 H 0.96994 * 119.99923 * 359.97438 * 7 4 2 41 41 H 1.08004 * 119.99875 * 352.94071 * 10 8 7 42 42 H 1.07996 * 120.00139 * 168.68433 * 11 10 8 43 43 H 1.08005 * 120.04911 * 0.02754 * 13 12 11 44 44 H 1.08006 * 119.95302 * 180.22971 * 14 13 12 45 45 H 0.96998 * 119.99874 * 179.97438 * 20 19 17 46 46 H 1.08007 * 119.94663 * 179.97438 * 25 15 14 47 47 H 1.08004 * 120.04756 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 1.4298 -2.1229 1.3137 6 6 1.6353 0.0688 2.4953 7 7 3.5001 -0.8265 1.1906 8 6 4.1730 -1.4285 2.1912 9 8 3.5678 -1.8852 3.1433 10 6 5.6311 -1.5282 2.1354 11 6 6.3166 -2.0012 3.1983 12 6 5.6381 -2.1808 4.4894 13 6 4.7699 -1.1928 4.9700 14 6 4.1330 -1.3675 6.1771 15 6 4.3589 -2.5192 6.9252 16 8 3.7330 -2.6849 8.1163 17 6 3.9011 -3.8698 8.7363 18 1 4.5767 -4.6042 8.3233 19 6 3.2063 -4.1459 9.9048 20 7 2.3834 -3.2518 10.4074 21 14 3.4399 -5.7879 10.7644 22 1 4.4128 -6.6114 10.0027 23 1 3.9546 -5.5585 12.1383 24 1 2.1380 -6.4988 10.8358 25 6 5.2251 -3.5014 6.4541 26 6 5.8618 -3.3380 5.2453 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6768 1.9563 0.8899 32 1 3.1302 1.4423 -0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.7935 -2.6369 2.2034 35 1 0.3435 -2.0446 1.3574 36 1 1.7182 -2.6859 0.4260 37 1 2.0700 1.0674 2.4494 38 1 0.5490 0.1472 2.5390 39 1 1.9989 -0.4448 3.3852 40 1 3.9824 -0.4629 0.4316 41 1 6.1596 -1.2236 1.2441 42 1 7.3635 -2.2474 3.0996 43 1 4.5971 -0.2970 4.3919 44 1 3.4603 -0.6077 6.5468 45 1 1.8973 -3.4450 11.2243 46 1 5.3977 -4.3933 7.0382 47 1 6.5335 -4.1010 4.8804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492821836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:32 Heat of formation + Delta-G solvation = -19.223388 kcal Electronic energy + Delta-G solvation = -26871.283810 eV Core-core repulsion = 23213.530501 eV Total energy + Delta-G solvation = -3657.753309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.27761 -38.89643 -37.73872 -36.23581 -33.15259 -33.02654 -32.10789 -30.53581 -30.08530 -28.18518 -27.73180 -26.55097 -25.41701 -23.99678 -22.56233 -21.72189 -20.84419 -19.20376 -18.81607 -17.89841 -17.22281 -16.57593 -16.12539 -14.92414 -14.79832 -14.68859 -14.48541 -14.30756 -14.10204 -13.75246 -13.48753 -13.35695 -13.28709 -13.12684 -12.88129 -12.54213 -12.48589 -12.22111 -12.05628 -11.79284 -11.67882 -11.61241 -11.40252 -11.29471 -11.17169 -10.96560 -10.72171 -10.65514 -10.60578 -10.49797 -10.37958 -9.40810 -9.19881 -9.09488 -8.84894 -8.66034 -7.87458 -6.82168 -6.43661 -3.99302 1.29925 2.45805 2.74162 3.14966 3.16392 3.21351 3.39488 3.71673 3.98986 4.47337 4.64688 4.72834 4.80046 5.08072 5.13976 5.18670 5.26251 5.27057 5.32616 5.38756 5.42350 5.59357 5.64787 5.66976 5.73574 5.76768 5.80381 5.82946 5.88386 5.94079 5.96873 6.05730 6.09556 6.28305 6.35637 6.47579 6.49792 6.55468 6.65137 6.78581 6.83416 7.07006 7.15608 7.39847 7.49092 7.53504 7.81417 7.95611 8.03398 8.66588 9.02317 9.74748 10.74376 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.003099 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.746346 B = 9034.242714 C = 9934.155539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.151 4.151 4 C 0.182 3.818 5 C -0.166 4.166 6 C -0.168 4.168 7 N -0.729 5.729 8 C 0.541 3.459 9 O -0.506 6.506 10 C -0.267 4.267 11 C 0.025 3.975 12 C -0.187 4.187 13 C 0.014 3.986 14 C -0.203 4.203 15 C 0.172 3.828 16 O -0.174 6.174 17 C -0.389 4.389 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.251 4.251 26 C -0.042 4.042 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.392 0.608 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.270 0.730 46 H 0.125 0.875 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 6.225 -21.270 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.208 4.208 4 C 0.097 3.903 5 C -0.224 4.224 6 C -0.226 4.226 7 N -0.382 5.382 8 C 0.331 3.669 9 O -0.383 6.383 10 C -0.288 4.288 11 C 0.005 3.995 12 C -0.188 4.188 13 C -0.004 4.004 14 C -0.222 4.222 15 C 0.117 3.883 16 O -0.076 6.076 17 C -0.465 4.465 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.270 4.270 26 C -0.060 4.060 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.225 0.775 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.258 6.055 -20.212 21.137 hybrid contribution 0.374 -0.683 -0.210 0.806 sum 1.632 5.373 -20.422 21.180 Atomic orbital electron populations 1.21932 0.94300 1.02363 1.02025 1.21336 0.96679 0.96287 0.97243 1.21929 1.00943 0.95847 1.02057 1.20203 0.79735 0.95407 0.94987 1.22290 1.00579 0.96134 1.03371 1.22334 1.01197 0.99902 0.99139 1.46147 1.06862 1.60989 1.24208 1.18408 0.88356 0.78042 0.82116 1.90929 1.69660 1.46100 1.31597 1.22649 0.93261 1.12449 1.00461 1.22311 0.97774 0.88024 0.91377 1.18277 1.06422 0.98263 0.95821 1.20424 0.91091 0.96456 0.92463 1.19996 1.06769 0.98736 0.96716 1.19520 0.90149 0.93028 0.85610 1.83906 1.61418 1.35876 1.26440 1.21436 1.26686 0.91670 1.06717 0.88876 1.25317 0.95423 0.99471 0.96373 1.70031 1.25017 1.33995 1.20443 0.85641 0.78541 0.80121 0.79104 1.19048 1.20141 1.20122 1.20945 1.04726 1.02182 0.99153 1.20733 0.96867 0.95369 0.93079 0.92008 0.92658 0.91997 0.91052 0.91872 0.92721 0.92785 0.89871 0.91932 0.93272 0.92669 0.92128 0.89762 0.77463 0.86426 0.86287 0.88104 0.86943 0.92045 0.85737 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.46 37.16 0.31 -0.83 16 2 C -0.10 -0.79 2.32 -90.62 -0.21 -1.00 16 3 C -0.15 -1.11 8.58 37.15 0.32 -0.79 16 4 C 0.18 1.99 0.53 -131.82 -0.07 1.92 16 5 C -0.17 -2.05 7.91 37.16 0.29 -1.76 16 6 C -0.17 -2.10 7.67 37.16 0.28 -1.82 16 7 N -0.73 -8.01 4.83 -49.03 -0.24 -8.25 16 8 C 0.54 7.75 6.19 -13.04 -0.08 7.67 16 9 O -0.51 -9.32 8.38 5.17 0.04 -9.28 16 10 C -0.27 -3.36 9.90 -37.50 -0.37 -3.73 16 11 C 0.02 0.35 9.80 -37.19 -0.36 -0.02 16 12 C -0.19 -3.44 4.54 -105.03 -0.48 -3.91 16 13 C 0.01 0.28 6.60 -39.15 -0.26 0.02 16 14 C -0.20 -4.64 9.97 -39.47 -0.39 -5.04 16 15 C 0.17 4.37 6.66 -38.88 -0.26 4.11 16 16 O -0.17 -5.14 9.74 0.74 0.01 -5.13 16 17 C -0.39 -11.15 9.48 30.91 0.29 -10.86 16 18 H 0.09 2.49 5.18 -52.49 -0.27 2.21 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.64 13.67 55.48 0.76 -24.88 16 21 Si 0.94 20.90 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 C -0.25 -5.75 9.14 -39.47 -0.36 -6.11 16 26 C -0.04 -0.82 9.78 -39.15 -0.38 -1.20 16 27 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.49 6.35 -51.93 -0.33 0.16 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.51 6.35 -51.93 -0.33 0.18 16 32 H 0.05 0.38 7.18 -51.93 -0.37 0.01 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 1.33 6.16 -51.93 -0.32 1.02 16 35 H 0.06 0.69 6.35 -51.93 -0.33 0.36 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.64 6.35 -51.93 -0.33 0.31 16 38 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 39 H 0.08 1.37 6.16 -51.93 -0.32 1.05 16 40 H 0.39 3.24 7.63 -40.82 -0.31 2.93 16 41 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.10 1.83 7.02 -52.48 -0.37 1.46 16 44 H 0.11 2.52 8.06 -52.48 -0.42 2.10 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.12 2.84 5.62 -52.48 -0.29 2.55 16 47 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -32.60 367.11 -7.52 -40.11 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.78 Total: 8.37 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -1.82 Total: -22.36 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.52 Total: -33.13 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.05 Total: -14.41 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.60 -7.52 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492821836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.890 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds