Wall clock time and date at job start Tue Mar 31 2020 13:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 C 1.52995 * 109.47491 * 59.99832 * 3 2 1 5 5 C 1.53004 * 109.47016 * 299.99811 * 3 2 1 6 6 C 1.53008 * 109.46969 * 180.02562 * 3 2 1 7 7 N 1.46498 * 109.46632 * 179.97438 * 6 3 2 8 8 C 1.34785 * 119.99521 * 179.97438 * 7 6 3 9 9 O 1.21715 * 120.00261 * 359.97438 * 8 7 6 10 10 C 1.46255 * 119.99650 * 180.27579 * 8 7 6 11 11 C 1.35025 * 119.99918 * 172.93880 * 10 8 7 12 12 C 1.46960 * 119.99925 * 348.68186 * 11 10 8 13 13 C 1.40028 * 120.10009 * 316.40557 * 12 11 10 14 14 C 1.37594 * 119.89934 * 179.76739 * 13 12 11 15 15 C 1.39184 * 120.09927 * 0.50673 * 14 13 12 16 16 O 1.35570 * 119.89843 * 179.76454 * 15 14 13 17 17 C 1.34783 * 116.99886 * 174.33946 * 16 15 14 18 18 H 1.07998 * 119.99829 * 5.06153 * 17 16 15 19 19 C 1.38721 * 119.99912 * 185.05607 * 17 16 15 20 20 N 1.31504 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99732 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47040 * 60.00415 * 21 19 17 23 23 H 1.48501 * 109.47112 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47374 * 300.00308 * 21 19 17 25 25 C 1.39177 * 120.19984 * 359.74795 * 15 14 13 26 26 C 1.37596 * 120.10326 * 359.97438 * 25 15 14 27 27 H 1.09004 * 109.47004 * 300.00441 * 1 2 3 28 28 H 1.08998 * 109.46965 * 60.00110 * 1 2 3 29 29 H 1.08995 * 109.47434 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47004 * 239.99559 * 2 1 3 31 31 H 1.08998 * 109.46965 * 119.99890 * 2 1 3 32 32 H 1.08995 * 109.47262 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.46958 * 300.00497 * 4 3 2 34 34 H 1.09005 * 109.46635 * 59.99997 * 4 3 2 35 35 H 1.09004 * 109.47029 * 300.00325 * 5 3 2 36 36 H 1.09003 * 109.46835 * 59.99870 * 5 3 2 37 37 H 1.08995 * 109.47039 * 180.02562 * 5 3 2 38 38 H 1.08992 * 109.47442 * 59.99841 * 6 3 2 39 39 H 1.09003 * 109.46758 * 299.99142 * 6 3 2 40 40 H 0.96995 * 120.00513 * 359.97438 * 7 6 3 41 41 H 1.08005 * 120.00497 * 352.93596 * 10 8 7 42 42 H 1.08000 * 120.00300 * 168.68630 * 11 10 8 43 43 H 1.08007 * 120.05004 * 0.02562 * 13 12 11 44 44 H 1.07995 * 119.95777 * 180.23340 * 14 13 12 45 45 H 0.96998 * 119.99874 * 179.97438 * 20 19 17 46 46 H 1.07998 * 119.94407 * 179.97438 * 25 15 14 47 47 H 1.08004 * 120.04756 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2491 5 6 1.5300 2.1637 -1.2493 6 6 3.5701 1.4424 -0.0006 7 7 4.0583 2.8236 -0.0013 8 6 5.3835 3.0699 -0.0014 9 8 6.1744 2.1447 -0.0005 10 6 5.8710 4.4488 0.0041 11 6 7.1903 4.6978 0.1478 12 6 8.1031 3.6169 0.5451 13 6 7.7405 2.7319 1.5680 14 6 8.5963 1.7184 1.9335 15 6 9.8253 1.5784 1.2954 16 8 10.6674 0.5812 1.6620 17 6 11.7881 0.4264 0.9294 18 1 12.0222 1.1311 0.1452 19 6 12.6409 -0.6379 1.1828 20 7 12.3556 -1.4962 2.1375 21 14 14.1945 -0.8520 0.1680 22 1 15.0583 0.3454 0.3267 23 1 14.9274 -2.0569 0.6331 24 1 13.8325 -1.0151 -1.2630 25 6 10.1922 2.4589 0.2819 26 6 9.3404 3.4719 -0.0942 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8938 3.1913 1.2493 33 1 0.4400 2.1638 1.2492 34 1 1.8934 1.6499 2.1392 35 1 1.8933 1.6498 -2.1393 36 1 0.4400 2.1637 -1.2493 37 1 1.8937 3.1912 -1.2495 38 1 3.9330 0.9287 -0.8908 39 1 3.9337 0.9285 0.8892 40 1 3.4281 3.5609 -0.0016 41 1 5.1758 5.2679 -0.1068 42 1 7.5747 5.6915 -0.0293 43 1 6.7887 2.8422 2.0664 44 1 8.3160 1.0331 2.7196 45 1 12.9517 -2.2406 2.3144 46 1 11.1470 2.3467 -0.2102 47 1 9.6258 4.1544 -0.8811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493851699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:37 Heat of formation + Delta-G solvation = -27.800859 kcal Electronic energy + Delta-G solvation = -26016.398017 eV Core-core repulsion = 22358.272761 eV Total energy + Delta-G solvation = -3658.125256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.92454 -38.88595 -38.10540 -36.36731 -33.87291 -33.00119 -32.09556 -30.35499 -30.08340 -28.21295 -27.61288 -26.86336 -25.39033 -24.01028 -22.40264 -21.71913 -20.81968 -19.53438 -18.67877 -17.89476 -17.20428 -16.61561 -15.77614 -15.41795 -15.19746 -14.79793 -14.51615 -14.48929 -14.23919 -13.89144 -13.71875 -13.55217 -13.37528 -13.13249 -12.94111 -12.57802 -12.44072 -12.27282 -12.23687 -12.12756 -11.99974 -11.66921 -11.43594 -11.33775 -10.98380 -10.86020 -10.80629 -10.73590 -10.65634 -10.61337 -10.39234 -9.45418 -9.36806 -9.12730 -8.87296 -8.66085 -7.88209 -6.82663 -6.42997 -3.98789 1.29014 2.46042 2.74329 3.15232 3.18176 3.19405 3.41859 3.70470 3.99563 4.40547 4.50168 4.50704 4.73089 4.98296 5.03601 5.09644 5.14501 5.19979 5.25985 5.32483 5.34167 5.39107 5.52152 5.53396 5.63908 5.68412 5.70519 5.73913 5.76676 5.82768 5.84642 5.87868 5.88809 6.11938 6.14507 6.28447 6.37178 6.47644 6.61343 6.63958 6.82695 7.07212 7.15274 7.39835 7.48813 7.53679 7.74148 7.95862 8.03739 8.61812 9.02595 9.74938 10.74907 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.002641 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.371068 B =10600.536369 C =11643.416525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.077 4.077 4 C -0.144 4.144 5 C -0.143 4.143 6 C 0.131 3.869 7 N -0.734 5.734 8 C 0.536 3.464 9 O -0.512 6.512 10 C -0.267 4.267 11 C 0.026 3.974 12 C -0.189 4.189 13 C 0.013 3.987 14 C -0.203 4.203 15 C 0.171 3.829 16 O -0.173 6.173 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.251 4.251 26 C -0.042 4.042 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.393 0.607 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.271 0.729 46 H 0.126 0.874 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.546 9.972 -4.779 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.077 4.077 4 C -0.201 4.201 5 C -0.201 4.201 6 C 0.007 3.993 7 N -0.388 5.388 8 C 0.326 3.674 9 O -0.388 6.388 10 C -0.288 4.288 11 C 0.007 3.993 12 C -0.190 4.190 13 C -0.005 4.005 14 C -0.222 4.222 15 C 0.116 3.884 16 O -0.075 6.075 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.270 4.270 26 C -0.060 4.060 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.228 0.772 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.081 0.919 46 H 0.143 0.857 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.854 8.871 -4.484 23.102 hybrid contribution 0.347 0.282 -0.656 0.794 sum -20.507 9.153 -5.141 23.038 Atomic orbital electron populations 1.21871 0.95690 1.01597 1.01978 1.21506 0.96036 0.94963 1.02596 1.20816 0.94256 0.96412 0.96215 1.21932 1.01052 1.00116 0.96990 1.21932 1.01062 1.00091 0.96976 1.21305 0.92042 0.83567 1.02370 1.46027 1.07231 1.08183 1.77373 1.18492 0.81726 0.90311 0.76853 1.90997 1.53964 1.46057 1.47791 1.22605 0.96788 0.95045 1.14369 1.22325 0.92407 0.97430 0.87180 1.18288 0.96041 1.01103 1.03534 1.20435 0.95093 0.91311 0.93698 1.20001 0.93937 1.02513 1.05753 1.19526 0.89545 0.87943 0.91348 1.83906 1.29532 1.43855 1.50242 1.21346 0.97261 1.12033 1.15982 0.88960 1.25318 0.99358 0.94711 0.97162 1.70013 1.37229 1.13409 1.28872 0.85773 0.79934 0.78277 0.79409 1.19455 1.20266 1.19461 1.20945 1.02300 0.99920 1.03851 1.20739 0.92123 0.96334 0.96843 0.92432 0.92474 0.92832 0.91629 0.91543 0.92708 0.92162 0.92317 0.92418 0.92156 0.92734 0.91721 0.91555 0.77194 0.86307 0.86148 0.88125 0.86882 0.91926 0.85680 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.21 37.16 0.34 -0.63 16 2 C -0.11 -0.86 4.99 -26.73 -0.13 -0.99 16 3 C -0.08 -0.60 0.56 -154.50 -0.09 -0.68 16 4 C -0.14 -1.01 7.95 37.16 0.30 -0.72 16 5 C -0.14 -0.99 7.95 37.16 0.30 -0.70 16 6 C 0.13 1.45 4.56 -4.04 -0.02 1.43 16 7 N -0.73 -8.20 4.95 -61.75 -0.31 -8.51 16 8 C 0.54 8.06 6.77 -13.04 -0.09 7.97 16 9 O -0.51 -10.21 12.17 5.18 0.06 -10.15 16 10 C -0.27 -3.43 9.90 -37.50 -0.37 -3.80 16 11 C 0.03 0.38 9.80 -37.19 -0.36 0.01 16 12 C -0.19 -3.56 4.54 -105.03 -0.48 -4.04 16 13 C 0.01 0.27 6.59 -39.15 -0.26 0.01 16 14 C -0.20 -4.75 9.97 -39.47 -0.39 -5.14 16 15 C 0.17 4.43 6.66 -38.88 -0.26 4.17 16 16 O -0.17 -5.16 9.74 0.74 0.01 -5.15 16 17 C -0.39 -11.26 9.48 30.91 0.29 -10.97 16 18 H 0.09 2.46 5.18 -52.49 -0.27 2.19 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 21 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.25 -5.83 9.14 -39.47 -0.36 -6.19 16 26 C -0.04 -0.83 9.78 -39.15 -0.38 -1.22 16 27 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 28 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.37 6.86 -51.93 -0.36 0.01 16 33 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 37 H 0.05 0.36 6.86 -51.93 -0.36 0.00 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.39 3.27 6.14 -40.82 -0.25 3.02 16 41 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.10 1.88 7.02 -52.48 -0.37 1.51 16 44 H 0.11 2.59 8.06 -52.49 -0.42 2.16 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.13 2.87 5.62 -52.49 -0.29 2.57 16 47 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -33.70 375.71 -7.92 -41.62 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.02 Total: 6.08 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -2.06 Total: -20.47 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.45 Total: -33.54 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.07 Total: -15.30 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.70 -7.92 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493851699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.822 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds