Wall clock time and date at job start Tue Mar 31 2020 13:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 C 1.52995 * 109.47491 * 59.99832 * 3 2 1 5 5 C 1.53004 * 109.47016 * 299.99811 * 3 2 1 6 6 C 1.53008 * 109.46969 * 180.02562 * 3 2 1 7 7 N 1.46498 * 109.46632 * 179.97438 * 6 3 2 8 8 C 1.34785 * 119.99521 * 179.97438 * 7 6 3 9 9 O 1.21715 * 120.00261 * 359.97438 * 8 7 6 10 10 C 1.46255 * 119.99650 * 180.27579 * 8 7 6 11 11 C 1.35025 * 119.99918 * 172.93880 * 10 8 7 12 12 C 1.46960 * 119.99925 * 348.68186 * 11 10 8 13 13 C 1.40028 * 120.10009 * 316.40557 * 12 11 10 14 14 C 1.37594 * 119.89934 * 179.76739 * 13 12 11 15 15 C 1.39184 * 120.09927 * 0.50673 * 14 13 12 16 16 O 1.35570 * 119.89843 * 179.76454 * 15 14 13 17 17 C 1.34783 * 116.99886 * 174.33946 * 16 15 14 18 18 H 1.07998 * 119.99829 * 5.06153 * 17 16 15 19 19 C 1.38721 * 119.99912 * 185.05607 * 17 16 15 20 20 N 1.31504 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99732 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47040 * 60.00415 * 21 19 17 23 23 H 1.48501 * 109.47112 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47374 * 300.00308 * 21 19 17 25 25 C 1.39177 * 120.19984 * 359.74795 * 15 14 13 26 26 C 1.37596 * 120.10326 * 359.97438 * 25 15 14 27 27 H 1.09004 * 109.47004 * 300.00441 * 1 2 3 28 28 H 1.08998 * 109.46965 * 60.00110 * 1 2 3 29 29 H 1.08995 * 109.47434 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47004 * 239.99559 * 2 1 3 31 31 H 1.08998 * 109.46965 * 119.99890 * 2 1 3 32 32 H 1.08995 * 109.47262 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.46958 * 300.00497 * 4 3 2 34 34 H 1.09005 * 109.46635 * 59.99997 * 4 3 2 35 35 H 1.09004 * 109.47029 * 300.00325 * 5 3 2 36 36 H 1.09003 * 109.46835 * 59.99870 * 5 3 2 37 37 H 1.08995 * 109.47039 * 180.02562 * 5 3 2 38 38 H 1.08992 * 109.47442 * 59.99841 * 6 3 2 39 39 H 1.09003 * 109.46758 * 299.99142 * 6 3 2 40 40 H 0.96995 * 120.00513 * 359.97438 * 7 6 3 41 41 H 1.08005 * 120.00497 * 352.93596 * 10 8 7 42 42 H 1.08000 * 120.00300 * 168.68630 * 11 10 8 43 43 H 1.08007 * 120.05004 * 0.02562 * 13 12 11 44 44 H 1.07995 * 119.95777 * 180.23340 * 14 13 12 45 45 H 0.96998 * 119.99874 * 179.97438 * 20 19 17 46 46 H 1.07998 * 119.94407 * 179.97438 * 25 15 14 47 47 H 1.08004 * 120.04756 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2491 5 6 1.5300 2.1637 -1.2493 6 6 3.5701 1.4424 -0.0006 7 7 4.0583 2.8236 -0.0013 8 6 5.3835 3.0699 -0.0014 9 8 6.1744 2.1447 -0.0005 10 6 5.8710 4.4488 0.0041 11 6 7.1903 4.6978 0.1478 12 6 8.1031 3.6169 0.5451 13 6 7.7405 2.7319 1.5680 14 6 8.5963 1.7184 1.9335 15 6 9.8253 1.5784 1.2954 16 8 10.6674 0.5812 1.6620 17 6 11.7881 0.4264 0.9294 18 1 12.0222 1.1311 0.1452 19 6 12.6409 -0.6379 1.1828 20 7 12.3556 -1.4962 2.1375 21 14 14.1945 -0.8520 0.1680 22 1 15.0583 0.3454 0.3267 23 1 14.9274 -2.0569 0.6331 24 1 13.8325 -1.0151 -1.2630 25 6 10.1922 2.4589 0.2819 26 6 9.3404 3.4719 -0.0942 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8938 3.1913 1.2493 33 1 0.4400 2.1638 1.2492 34 1 1.8934 1.6499 2.1392 35 1 1.8933 1.6498 -2.1393 36 1 0.4400 2.1637 -1.2493 37 1 1.8937 3.1912 -1.2495 38 1 3.9330 0.9287 -0.8908 39 1 3.9337 0.9285 0.8892 40 1 3.4281 3.5609 -0.0016 41 1 5.1758 5.2679 -0.1068 42 1 7.5747 5.6915 -0.0293 43 1 6.7887 2.8422 2.0664 44 1 8.3160 1.0331 2.7196 45 1 12.9517 -2.2406 2.3144 46 1 11.1470 2.3467 -0.2102 47 1 9.6258 4.1544 -0.8811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493851699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:36 Heat of formation + Delta-G solvation = -49.154987 kcal Electronic energy + Delta-G solvation = -26017.324001 eV Core-core repulsion = 22358.272761 eV Total energy + Delta-G solvation = -3659.051240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.17963 -40.50924 -39.16613 -38.02534 -34.94939 -34.58546 -33.90291 -31.82310 -31.08296 -29.66837 -28.17831 -27.89651 -27.32225 -24.98147 -23.72805 -23.35089 -22.22482 -20.73315 -19.84268 -19.44181 -18.83792 -18.09164 -16.89336 -16.48698 -16.38248 -16.25647 -15.93616 -15.68468 -15.49369 -15.46052 -15.08041 -14.64241 -14.54820 -14.47456 -14.28110 -14.12497 -13.72649 -13.56122 -13.10935 -13.02847 -12.96274 -12.83500 -12.66629 -12.61444 -12.37127 -12.23419 -12.13180 -12.02644 -11.57857 -11.42668 -11.38321 -11.24440 -10.95060 -10.65781 -10.38595 -10.00459 -9.56126 -8.55398 -8.48607 -6.16157 0.00211 0.71395 1.13289 1.32822 1.46608 1.50209 2.17013 2.40598 2.50685 2.86845 3.20438 3.52421 3.69082 3.83496 3.86791 4.01187 4.08003 4.16034 4.18270 4.36804 4.39484 4.54394 4.60156 4.60760 4.70451 4.73792 4.75371 4.77424 4.86937 5.04957 5.05020 5.08319 5.09438 5.15286 5.16635 5.21967 5.25632 5.27098 5.28003 5.46914 5.51996 5.57285 5.57953 5.67954 5.72322 5.85385 6.01993 6.25113 6.73982 6.94944 7.47956 7.77245 8.74422 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.002641 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.371068 B =10600.536369 C =11643.416525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.067 4.067 4 C -0.142 4.142 5 C -0.141 4.141 6 C 0.131 3.869 7 N -0.711 5.711 8 C 0.522 3.478 9 O -0.571 6.571 10 C -0.230 4.230 11 C 0.004 3.996 12 C -0.160 4.160 13 C 0.015 3.985 14 C -0.222 4.222 15 C 0.126 3.874 16 O -0.231 6.231 17 C -0.417 4.417 18 H 0.103 0.897 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.022 2.978 22 H -0.253 1.253 23 H -0.270 1.270 24 H -0.259 1.259 25 C -0.259 4.259 26 C -0.048 4.048 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.413 0.587 41 H 0.175 0.825 42 H 0.170 0.830 43 H 0.118 0.882 44 H 0.099 0.901 45 H 0.274 0.726 46 H 0.120 0.880 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.305 14.090 -6.946 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.067 4.067 4 C -0.199 4.199 5 C -0.199 4.199 6 C 0.007 3.993 7 N -0.365 5.365 8 C 0.313 3.687 9 O -0.451 6.451 10 C -0.251 4.251 11 C -0.015 4.015 12 C -0.161 4.161 13 C -0.003 4.003 14 C -0.242 4.242 15 C 0.076 3.924 16 O -0.137 6.137 17 C -0.493 4.493 18 H 0.120 0.880 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.840 3.160 22 H -0.178 1.178 23 H -0.194 1.194 24 H -0.183 1.183 25 C -0.278 4.278 26 C -0.066 4.066 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.251 0.749 41 H 0.192 0.808 42 H 0.187 0.813 43 H 0.136 0.864 44 H 0.118 0.882 45 H 0.083 0.917 46 H 0.138 0.862 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.715 13.070 -6.663 27.886 hybrid contribution 0.690 -0.745 -0.047 1.017 sum -23.025 12.326 -6.710 26.965 Atomic orbital electron populations 1.21844 0.94122 1.02005 1.02718 1.21530 0.97366 0.94810 1.01730 1.20745 0.91492 0.96898 0.97597 1.21933 1.02120 1.00171 0.95724 1.21928 1.02112 1.00156 0.95655 1.21293 0.94536 0.83191 1.00293 1.45866 1.06587 1.08916 1.75104 1.19163 0.82397 0.90997 0.76163 1.91006 1.55624 1.47975 1.50540 1.23073 0.97065 0.94850 1.10092 1.22579 0.91981 0.97816 0.89137 1.18884 0.96049 1.00457 1.00683 1.20658 0.94827 0.90669 0.94191 1.20177 0.94187 1.03865 1.05925 1.20008 0.90345 0.88605 0.93485 1.83874 1.30977 1.46496 1.52399 1.21858 0.97744 1.12970 1.16679 0.88016 1.26689 1.03159 0.93881 0.98440 1.70171 1.39363 1.14763 1.31670 0.84614 0.74889 0.78862 0.77592 1.17752 1.19406 1.18303 1.21094 1.02978 1.00533 1.03237 1.21191 0.91971 0.95820 0.97626 0.91714 0.91575 0.92738 0.92449 0.92649 0.91763 0.90503 0.93512 0.93337 0.90520 0.91763 0.93727 0.93898 0.74890 0.80808 0.81281 0.86422 0.88239 0.91743 0.86178 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.21 71.98 0.66 -0.92 16 2 C -0.12 -1.69 4.99 30.59 0.15 -1.53 16 3 C -0.07 -0.93 0.56 -52.18 -0.03 -0.95 16 4 C -0.14 -1.62 7.95 71.98 0.57 -1.05 16 5 C -0.14 -1.52 7.95 71.98 0.57 -0.95 16 6 C 0.13 2.83 4.56 86.38 0.39 3.23 16 7 N -0.71 -13.83 4.95 -467.49 -2.32 -16.14 16 8 C 0.52 14.15 6.77 86.32 0.58 14.73 16 9 O -0.57 -22.45 12.17 -4.40 -0.05 -22.50 16 10 C -0.23 -4.55 9.90 23.62 0.23 -4.32 16 11 C 0.00 0.10 9.80 23.82 0.23 0.33 16 12 C -0.16 -5.66 4.54 -20.13 -0.09 -5.75 16 13 C 0.01 0.61 6.59 22.55 0.15 0.75 16 14 C -0.22 -11.11 9.97 22.35 0.22 -10.89 16 15 C 0.13 7.02 6.66 22.72 0.15 7.17 16 16 O -0.23 -15.05 9.74 -20.28 -0.20 -15.24 16 17 C -0.42 -25.75 9.48 67.94 0.64 -25.11 16 18 H 0.10 5.77 5.18 -2.91 -0.02 5.75 16 19 C -0.02 -1.45 5.49 84.86 0.47 -0.99 16 20 N -0.92 -59.14 13.67 21.62 0.30 -58.85 16 21 Si 1.02 44.68 29.55 68.60 2.03 46.70 16 22 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 C -0.26 -12.44 9.14 22.34 0.20 -12.23 16 26 C -0.05 -1.83 9.78 22.55 0.22 -1.61 16 27 H 0.06 0.60 6.43 -2.39 -0.02 0.58 16 28 H 0.07 0.59 6.43 -2.39 -0.02 0.57 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.60 6.86 -2.39 -0.02 0.59 16 33 H 0.08 0.66 6.43 -2.39 -0.02 0.64 16 34 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.62 6.43 -2.39 -0.02 0.60 16 37 H 0.06 0.57 6.86 -2.39 -0.02 0.55 16 38 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.41 4.91 6.14 -92.71 -0.57 4.34 16 41 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 43 H 0.12 4.31 7.02 -2.91 -0.02 4.29 16 44 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 45 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 46 H 0.12 5.74 5.62 -2.91 -0.02 5.72 16 47 H 0.15 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -83.59 375.71 5.50 -78.09 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.41 Total: 28.03 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 5.34 Total: -40.09 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -2.02 Total: -74.99 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.25 Total: -37.74 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -83.59 5.50 -78.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493851699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.930 kcal (2) G-P(sol) polarization free energy of solvation -83.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds