Wall clock time and date at job start Tue Mar 31 2020 12:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.46927 * 2 1 4 4 C 1.38289 * 119.97636 * 270.02508 * 3 2 1 5 5 C 1.38241 * 120.11311 * 180.02562 * 4 3 2 6 6 C 1.38171 * 120.05732 * 359.67793 * 5 4 3 7 7 C 1.38716 * 119.93984 * 0.57190 * 6 5 4 8 8 O 1.35896 * 120.05263 * 179.72356 * 7 6 5 9 9 C 1.42905 * 117.00039 * 359.72624 * 8 7 6 10 10 C 1.50699 * 109.46972 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00037 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00169 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46904 * 89.99597 * 13 12 10 15 15 H 1.07993 * 120.00490 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99735 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00009 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99850 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.46883 * 90.00692 * 18 16 14 20 20 H 1.48506 * 109.46975 * 210.00197 * 18 16 14 21 21 H 1.48494 * 109.47208 * 330.00066 * 18 16 14 22 22 C 1.46499 * 119.99707 * 359.97438 * 12 10 9 23 23 C 1.52998 * 109.47055 * 90.00663 * 22 12 10 24 24 C 1.53006 * 117.49624 * 243.62225 * 23 22 12 25 25 C 1.53000 * 117.49766 * 174.99858 * 23 22 12 26 26 C 1.38128 * 119.97066 * 90.00182 * 3 2 1 27 27 H 1.08998 * 109.47100 * 299.99595 * 1 2 3 28 28 H 1.08997 * 109.47679 * 59.99956 * 1 2 3 29 29 H 1.08999 * 109.46794 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47100 * 240.00405 * 2 1 3 31 31 H 1.08996 * 109.46987 * 120.00327 * 2 1 3 32 32 H 1.08001 * 119.93943 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.97077 * 179.97438 * 5 4 3 34 34 H 1.07995 * 120.02590 * 180.29966 * 6 5 4 35 35 H 1.09000 * 109.47187 * 300.00222 * 9 8 7 36 36 H 1.09001 * 109.46558 * 60.00270 * 9 8 7 37 37 H 1.08991 * 109.47410 * 209.99714 * 13 12 10 38 38 H 1.09007 * 109.47039 * 329.99988 * 13 12 10 39 39 H 0.97004 * 120.00211 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46740 * 210.00435 * 22 12 10 41 41 H 1.09001 * 109.47266 * 330.00158 * 22 12 10 42 42 H 1.08997 * 115.54991 * 29.32455 * 23 22 12 43 43 H 1.09006 * 117.49685 * 359.97438 * 24 23 22 44 44 H 1.08997 * 117.49854 * 145.02300 * 24 23 22 45 45 H 1.08999 * 117.49770 * 214.97433 * 25 23 22 46 46 H 1.08998 * 117.50268 * 359.97438 * 25 23 22 47 47 H 1.07999 * 120.03054 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0724 -1.1979 5 6 2.7234 3.3756 -1.2012 6 6 2.9496 4.0326 -0.0070 7 6 2.7249 3.3795 1.1960 8 8 2.9520 4.0217 2.3719 9 6 3.4277 5.3670 2.2950 10 6 3.6211 5.9117 3.6868 11 8 3.3761 5.2161 4.6497 12 7 4.0662 7.1718 3.8615 13 6 4.2547 7.7011 5.2145 14 6 5.6591 7.4095 5.6768 15 1 6.3430 6.8829 5.0276 16 6 6.0710 7.8149 6.9286 17 7 7.2967 7.5609 7.3319 18 14 4.8883 8.7263 8.0512 19 1 4.1447 7.7484 8.8853 20 1 5.6516 9.6478 8.9308 21 1 3.9288 9.5074 7.2299 22 6 4.3626 8.0118 2.6984 23 6 3.1057 8.7847 2.2939 24 6 2.5081 8.4905 0.9165 25 6 3.2394 9.8109 1.1670 26 6 2.2623 2.0713 1.1966 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0817 1.5620 -2.1324 33 1 2.9025 3.8822 -2.1381 34 1 3.3054 5.0523 -0.0102 35 1 4.3785 5.3864 1.7623 36 1 2.7003 5.9797 1.7625 37 1 4.0903 8.7786 5.2093 38 1 3.5436 7.2283 5.8920 39 1 7.5865 7.8464 8.2125 40 1 5.1561 8.7151 2.9509 41 1 4.6851 7.3828 1.8686 42 1 2.4140 9.0144 3.1044 43 1 3.0107 7.7465 0.2983 44 1 1.4229 8.5266 0.8206 45 1 2.6354 10.7155 1.2358 46 1 4.2229 9.9356 0.7140 47 1 2.0828 1.5621 2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519055301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:19 Heat of formation + Delta-G solvation = -25.844135 kcal Electronic energy + Delta-G solvation = -26279.903843 eV Core-core repulsion = 22621.863437 eV Total energy + Delta-G solvation = -3658.040406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.39066 -39.26961 -37.73576 -37.17156 -34.60058 -33.97087 -32.54669 -30.84645 -29.37725 -29.11686 -27.59317 -26.12405 -24.12573 -22.65603 -22.43075 -22.40466 -20.96259 -20.73221 -18.65984 -18.00845 -16.98351 -16.77280 -16.21057 -16.13064 -15.84481 -15.31495 -14.93383 -14.76592 -14.57482 -14.16603 -13.96729 -13.65334 -13.53950 -13.22692 -13.10842 -12.72745 -12.55790 -12.26225 -12.16445 -12.01018 -11.67702 -11.57893 -11.55803 -11.54043 -11.20773 -11.03427 -10.91961 -10.83887 -10.59301 -10.41000 -10.16354 -9.98950 -9.56414 -9.08417 -8.92132 -8.61001 -8.23329 -7.85351 -6.10768 -4.10159 1.20492 1.37559 2.85591 3.15931 3.28244 3.33937 3.36267 3.65141 3.69464 3.96410 4.37745 4.54617 4.60382 4.72265 4.81255 4.84651 4.86644 4.96968 5.06103 5.11787 5.12453 5.17355 5.19609 5.23231 5.30497 5.32623 5.43664 5.47114 5.55112 5.67658 5.69383 5.75730 5.82968 5.92624 5.93448 5.99162 6.03975 6.23029 6.28040 6.31972 6.48226 6.60220 6.69344 6.88235 7.20908 7.41012 7.57083 8.09021 8.42938 8.82005 8.92733 9.48793 11.02532 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.003159 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.126220 B = 8861.203840 C =10142.002258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.045 4.045 4 C -0.162 4.162 5 C -0.077 4.077 6 C -0.217 4.217 7 C 0.139 3.861 8 O -0.287 6.287 9 C 0.042 3.958 10 C 0.513 3.487 11 O -0.515 6.515 12 N -0.586 5.586 13 C 0.218 3.782 14 C -0.531 4.531 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.896 5.896 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.139 3.861 23 C -0.171 4.171 24 C -0.188 4.188 25 C -0.172 4.172 26 C -0.150 4.150 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.034 0.966 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.840 -5.198 -20.457 24.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.045 4.045 4 C -0.180 4.180 5 C -0.095 4.095 6 C -0.236 4.236 7 C 0.093 3.907 8 O -0.199 6.199 9 C -0.037 4.037 10 C 0.298 3.702 11 O -0.390 6.390 12 N -0.319 5.319 13 C 0.098 3.902 14 C -0.570 4.570 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.190 1.190 22 C 0.014 3.986 23 C -0.190 4.190 24 C -0.225 4.225 25 C -0.210 4.210 26 C -0.169 4.169 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.860 -5.618 -19.536 23.534 hybrid contribution -0.299 0.847 0.418 0.991 sum -12.159 -4.771 -19.118 23.154 Atomic orbital electron populations 1.21747 0.94567 1.01719 1.02391 1.20559 0.96299 0.92343 1.03057 1.19662 0.96704 0.95877 0.92227 1.20876 1.04342 0.95438 0.97381 1.20886 0.96877 0.94471 0.97251 1.21263 1.08764 1.01276 0.92270 1.19108 0.94560 0.92262 0.84737 1.86192 1.80143 1.26292 1.27266 1.22691 1.00476 0.82360 0.98138 1.19705 0.78728 0.82417 0.89389 1.90722 1.49625 1.56911 1.41719 1.47773 1.64260 1.11530 1.08290 1.19710 0.98251 0.93960 0.78271 1.21308 0.95883 1.38057 1.01720 0.90693 1.24845 0.95077 0.95529 0.97455 1.69891 1.17003 1.46689 1.19844 0.86859 0.81347 0.80192 0.81353 1.19851 1.21031 1.19024 1.21115 0.95217 0.94073 0.88152 1.22968 1.00981 1.02639 0.92407 1.23081 1.00077 0.99808 0.99493 1.22903 1.02151 0.93239 1.02659 1.20316 1.05064 0.92693 0.98783 0.92324 0.92561 0.92367 0.90866 0.90729 0.86192 0.85891 0.85564 0.89588 0.89282 0.94830 0.94422 0.92501 0.88693 0.91338 0.87248 0.88980 0.88957 0.88839 0.88524 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.73 16 2 C -0.09 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.04 -0.48 5.13 -104.65 -0.54 -1.01 16 4 C -0.16 -1.59 9.70 -39.56 -0.38 -1.98 16 5 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 6 C -0.22 -2.55 9.04 -39.43 -0.36 -2.91 16 7 C 0.14 2.00 6.69 -39.21 -0.26 1.74 16 8 O -0.29 -4.99 9.67 -39.33 -0.38 -5.37 16 9 C 0.04 0.66 3.77 36.01 0.14 0.79 16 10 C 0.51 10.67 7.75 -10.99 -0.09 10.59 16 11 O -0.51 -13.28 16.08 -14.35 -0.23 -13.51 16 12 N -0.59 -11.75 2.46 -175.06 -0.43 -12.18 16 13 C 0.22 5.24 4.23 -5.19 -0.02 5.22 16 14 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 15 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 18 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 22 C 0.14 2.07 5.49 -4.04 -0.02 2.04 16 23 C -0.17 -2.12 5.95 -90.62 -0.54 -2.66 16 24 C -0.19 -1.83 9.18 -26.72 -0.25 -2.08 16 25 C -0.17 -1.69 10.25 -26.73 -0.27 -1.96 16 26 C -0.15 -1.96 9.64 -39.43 -0.38 -2.34 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.13 1.26 6.30 -52.49 -0.33 0.93 16 35 H 0.09 1.17 6.93 -51.93 -0.36 0.81 16 36 H 0.09 1.14 6.35 -51.93 -0.33 0.81 16 37 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 38 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 41 H 0.07 0.85 6.17 -51.93 -0.32 0.53 16 42 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 43 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -34.63 387.99 -10.25 -44.88 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.55 Total: 1.07 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.61 Total: -10.74 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.34 Total: -38.96 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.61 Total: -18.88 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.63 -10.25 -44.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519055301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.037 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds