Wall clock time and date at job start Tue Mar 31 2020 12:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.46927 * 2 1 4 4 C 1.38289 * 119.97636 * 270.02508 * 3 2 1 5 5 C 1.38241 * 120.11311 * 180.02562 * 4 3 2 6 6 C 1.38171 * 120.05732 * 359.67793 * 5 4 3 7 7 C 1.38716 * 119.93984 * 0.57190 * 6 5 4 8 8 O 1.35896 * 120.05263 * 179.72356 * 7 6 5 9 9 C 1.42905 * 117.00039 * 359.72624 * 8 7 6 10 10 C 1.50699 * 109.46972 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00037 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00169 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46904 * 89.99597 * 13 12 10 15 15 H 1.07993 * 120.00490 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99735 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00009 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99850 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.46883 * 90.00692 * 18 16 14 20 20 H 1.48506 * 109.46975 * 210.00197 * 18 16 14 21 21 H 1.48494 * 109.47208 * 330.00066 * 18 16 14 22 22 C 1.46499 * 119.99707 * 359.97438 * 12 10 9 23 23 C 1.52998 * 109.47055 * 90.00663 * 22 12 10 24 24 C 1.53006 * 117.49624 * 243.62225 * 23 22 12 25 25 C 1.53000 * 117.49766 * 174.99858 * 23 22 12 26 26 C 1.38128 * 119.97066 * 90.00182 * 3 2 1 27 27 H 1.08998 * 109.47100 * 299.99595 * 1 2 3 28 28 H 1.08997 * 109.47679 * 59.99956 * 1 2 3 29 29 H 1.08999 * 109.46794 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47100 * 240.00405 * 2 1 3 31 31 H 1.08996 * 109.46987 * 120.00327 * 2 1 3 32 32 H 1.08001 * 119.93943 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.97077 * 179.97438 * 5 4 3 34 34 H 1.07995 * 120.02590 * 180.29966 * 6 5 4 35 35 H 1.09000 * 109.47187 * 300.00222 * 9 8 7 36 36 H 1.09001 * 109.46558 * 60.00270 * 9 8 7 37 37 H 1.08991 * 109.47410 * 209.99714 * 13 12 10 38 38 H 1.09007 * 109.47039 * 329.99988 * 13 12 10 39 39 H 0.97004 * 120.00211 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46740 * 210.00435 * 22 12 10 41 41 H 1.09001 * 109.47266 * 330.00158 * 22 12 10 42 42 H 1.08997 * 115.54991 * 29.32455 * 23 22 12 43 43 H 1.09006 * 117.49685 * 359.97438 * 24 23 22 44 44 H 1.08997 * 117.49854 * 145.02300 * 24 23 22 45 45 H 1.08999 * 117.49770 * 214.97433 * 25 23 22 46 46 H 1.08998 * 117.50268 * 359.97438 * 25 23 22 47 47 H 1.07999 * 120.03054 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0724 -1.1979 5 6 2.7234 3.3756 -1.2012 6 6 2.9496 4.0326 -0.0070 7 6 2.7249 3.3795 1.1960 8 8 2.9520 4.0217 2.3719 9 6 3.4277 5.3670 2.2950 10 6 3.6211 5.9117 3.6868 11 8 3.3761 5.2161 4.6497 12 7 4.0662 7.1718 3.8615 13 6 4.2547 7.7011 5.2145 14 6 5.6591 7.4095 5.6768 15 1 6.3430 6.8829 5.0276 16 6 6.0710 7.8149 6.9286 17 7 7.2967 7.5609 7.3319 18 14 4.8883 8.7263 8.0512 19 1 4.1447 7.7484 8.8853 20 1 5.6516 9.6478 8.9308 21 1 3.9288 9.5074 7.2299 22 6 4.3626 8.0118 2.6984 23 6 3.1057 8.7847 2.2939 24 6 2.5081 8.4905 0.9165 25 6 3.2394 9.8109 1.1670 26 6 2.2623 2.0713 1.1966 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0817 1.5620 -2.1324 33 1 2.9025 3.8822 -2.1381 34 1 3.3054 5.0523 -0.0102 35 1 4.3785 5.3864 1.7623 36 1 2.7003 5.9797 1.7625 37 1 4.0903 8.7786 5.2093 38 1 3.5436 7.2283 5.8920 39 1 7.5865 7.8464 8.2125 40 1 5.1561 8.7151 2.9509 41 1 4.6851 7.3828 1.8686 42 1 2.4140 9.0144 3.1044 43 1 3.0107 7.7465 0.2983 44 1 1.4229 8.5266 0.8206 45 1 2.6354 10.7155 1.2358 46 1 4.2229 9.9356 0.7140 47 1 2.0828 1.5621 2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519055301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:17 Heat of formation + Delta-G solvation = -45.254241 kcal Electronic energy + Delta-G solvation = -26280.745529 eV Core-core repulsion = 22621.863437 eV Total energy + Delta-G solvation = -3658.882091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.55229 -40.58259 -38.74820 -38.32631 -36.22108 -34.70782 -34.64884 -31.95574 -30.85090 -30.02185 -28.95214 -27.59229 -24.99682 -24.24326 -23.45452 -23.16821 -22.02114 -21.69218 -20.12199 -19.12744 -19.09507 -18.04136 -17.43082 -17.40192 -16.83299 -16.73927 -16.15202 -15.91860 -15.64390 -15.49082 -14.93212 -14.83999 -14.57078 -14.45862 -14.29930 -14.03743 -13.92289 -13.74686 -13.40064 -13.18221 -12.93159 -12.72966 -12.62666 -12.47801 -12.35218 -12.27417 -12.09307 -11.94346 -11.84366 -11.78606 -11.62173 -11.27110 -10.99193 -10.85468 -10.65650 -9.75873 -9.55354 -9.16883 -8.36410 -6.41902 0.37115 0.49114 1.30265 1.35288 1.42869 1.54039 1.61579 2.28789 2.55673 2.80387 2.94733 2.97966 3.39040 3.78961 3.84123 3.85774 3.95907 3.98103 4.04010 4.13803 4.16357 4.25126 4.30530 4.40930 4.49936 4.53528 4.65454 4.67267 4.70721 4.75000 4.80845 4.85419 4.90179 5.08436 5.09589 5.10475 5.15101 5.28691 5.34164 5.36374 5.39597 5.41637 5.50271 5.51277 5.68068 5.86218 6.18918 6.37213 6.54289 6.59444 7.14472 7.27286 8.80524 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.003159 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.126220 B = 8861.203840 C =10142.002258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.047 4.047 4 C -0.158 4.158 5 C -0.074 4.074 6 C -0.219 4.219 7 C 0.107 3.893 8 O -0.325 6.325 9 C 0.058 3.942 10 C 0.500 3.500 11 O -0.580 6.580 12 N -0.588 5.588 13 C 0.227 3.773 14 C -0.538 4.538 15 H 0.030 0.970 16 C 0.013 3.987 17 N -0.944 5.944 18 Si 0.946 3.054 19 H -0.278 1.278 20 H -0.273 1.273 21 H -0.237 1.237 22 C 0.135 3.865 23 C -0.195 4.195 24 C -0.172 4.172 25 C -0.157 4.157 26 C -0.175 4.175 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.055 0.945 38 H 0.017 0.983 39 H 0.269 0.731 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 -4.133 -24.185 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.047 4.047 4 C -0.176 4.176 5 C -0.091 4.091 6 C -0.238 4.238 7 C 0.062 3.938 8 O -0.239 6.239 9 C -0.020 4.020 10 C 0.288 3.712 11 O -0.460 6.460 12 N -0.319 5.319 13 C 0.105 3.895 14 C -0.577 4.577 15 H 0.049 0.951 16 C -0.186 4.186 17 N -0.584 5.584 18 Si 0.769 3.231 19 H -0.204 1.204 20 H -0.198 1.198 21 H -0.160 1.160 22 C 0.013 3.987 23 C -0.214 4.214 24 C -0.209 4.209 25 C -0.195 4.195 26 C -0.194 4.194 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.163 0.837 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.130 0.870 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.527 -4.521 -23.338 27.351 hybrid contribution 0.271 0.411 1.457 1.538 sum -13.256 -4.110 -21.881 25.911 Atomic orbital electron populations 1.21730 0.93953 1.02581 1.01910 1.20629 0.96760 0.91030 1.03848 1.19963 0.96062 0.96922 0.91754 1.21302 1.02748 0.95586 0.97985 1.21322 0.95406 0.94522 0.97879 1.21514 1.08385 1.02168 0.91723 1.19402 0.96800 0.92854 0.84756 1.86129 1.81142 1.26971 1.29652 1.22576 1.02571 0.82505 0.94349 1.20705 0.77349 0.81999 0.91124 1.90676 1.52524 1.58566 1.44247 1.47824 1.63529 1.12191 1.08358 1.19358 0.94779 0.94888 0.80460 1.21534 0.97324 1.37308 1.01490 0.95140 1.25829 0.96929 0.96578 0.99219 1.70041 1.19285 1.48376 1.20672 0.85744 0.79267 0.78995 0.79139 1.20398 1.19780 1.15957 1.21390 0.96510 0.93887 0.86934 1.22687 1.00010 1.05209 0.93528 1.23233 1.00840 1.00065 0.96721 1.23014 1.02977 0.93472 0.99993 1.20466 1.06533 0.92984 0.99418 0.93885 0.91931 0.90867 0.88796 0.91231 0.83214 0.82474 0.83659 0.87266 0.85976 0.92696 0.96477 0.92189 0.89904 0.88466 0.89017 0.87049 0.88088 0.87906 0.87376 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 71.98 0.71 -1.22 16 2 C -0.09 -1.27 6.06 29.85 0.18 -1.09 16 3 C -0.05 -0.94 5.13 -19.88 -0.10 -1.04 16 4 C -0.16 -2.57 9.70 22.28 0.22 -2.36 16 5 C -0.07 -1.19 10.04 22.25 0.22 -0.96 16 6 C -0.22 -4.59 9.04 22.37 0.20 -4.38 16 7 C 0.11 3.05 6.69 22.51 0.15 3.20 16 8 O -0.33 -11.66 9.67 -73.35 -0.71 -12.37 16 9 C 0.06 1.77 3.77 71.24 0.27 2.04 16 10 C 0.50 21.52 7.75 87.66 0.68 22.20 16 11 O -0.58 -31.79 16.08 16.00 0.26 -31.53 16 12 N -0.59 -24.01 2.46 -826.15 -2.03 -26.04 16 13 C 0.23 11.19 4.23 85.63 0.36 11.55 16 14 C -0.54 -31.99 9.94 25.60 0.25 -31.74 16 15 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 16 C 0.01 0.76 5.47 84.66 0.46 1.22 16 17 N -0.94 -60.22 13.96 21.45 0.30 -59.92 16 18 Si 0.95 44.91 27.47 68.60 1.88 46.80 16 19 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 22 C 0.13 3.88 5.49 86.38 0.47 4.35 16 23 C -0.19 -4.43 5.95 -10.79 -0.06 -4.49 16 24 C -0.17 -2.67 9.18 30.60 0.28 -2.39 16 25 C -0.16 -2.54 10.25 30.60 0.31 -2.22 16 26 C -0.18 -4.71 9.64 22.37 0.22 -4.49 16 27 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 31 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 32 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.15 2.34 6.30 -2.91 -0.02 2.32 16 35 H 0.11 2.79 6.93 -2.39 -0.02 2.77 16 36 H 0.12 2.85 6.35 -2.39 -0.02 2.84 16 37 H 0.06 2.47 7.13 -2.39 -0.02 2.45 16 38 H 0.02 0.92 6.85 -2.38 -0.02 0.90 16 39 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 40 H 0.08 2.56 8.07 -2.39 -0.02 2.54 16 41 H 0.10 2.18 6.17 -2.39 -0.01 2.17 16 42 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.11 1.32 7.87 -2.38 -0.02 1.30 16 44 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 47 H 0.11 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -82.36 387.99 5.42 -76.94 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.89 Total: 17.97 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 4.83 Total: -11.83 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -1.73 Total: -85.97 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.45 Total: -43.90 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.80 kcal Total: -82.36 5.42 -76.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519055301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.682 kcal (2) G-P(sol) polarization free energy of solvation -82.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds