Wall clock time and date at job start Tue Mar 31 2020 12:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47338 * 2 1 4 4 C 1.38285 * 119.97334 * 270.02326 * 3 2 1 5 5 C 1.38243 * 120.11287 * 180.02562 * 4 3 2 6 6 C 1.38173 * 120.05291 * 359.68247 * 5 4 3 7 7 C 1.38710 * 119.94491 * 0.56841 * 6 5 4 8 8 O 1.35898 * 120.05627 * 179.72229 * 7 6 5 9 9 C 1.42899 * 117.00156 * 359.73212 * 8 7 6 10 10 C 1.50701 * 109.47008 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00166 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99585 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.62730 * 180.02562 * 12 10 9 14 14 C 1.53191 * 108.89109 * 126.46248 * 13 12 10 15 15 C 1.53044 * 109.31440 * 54.56430 * 14 13 12 16 16 C 1.50696 * 109.46055 * 178.62547 * 15 14 13 17 17 H 1.08006 * 119.99855 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00185 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00067 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00259 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47295 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47122 * 120.00044 * 20 18 16 23 23 H 1.48498 * 109.47531 * 240.00539 * 20 18 16 24 24 C 1.53040 * 109.53662 * 298.63203 * 15 14 13 25 25 C 1.46957 * 120.65462 * 359.81587 * 12 10 9 26 26 C 1.38123 * 119.96924 * 89.99595 * 3 2 1 27 27 H 1.09001 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47120 * 300.00110 * 1 2 3 29 29 H 1.09008 * 109.46874 * 59.99934 * 1 2 3 30 30 H 1.09004 * 109.47149 * 240.00430 * 2 1 3 31 31 H 1.09000 * 109.47105 * 119.99898 * 2 1 3 32 32 H 1.07997 * 119.94670 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.97624 * 179.97438 * 5 4 3 34 34 H 1.07996 * 120.02531 * 180.29640 * 6 5 4 35 35 H 1.09002 * 109.47023 * 59.99572 * 9 8 7 36 36 H 1.08999 * 109.46694 * 299.99986 * 9 8 7 37 37 H 1.09002 * 109.58861 * 6.60251 * 13 12 10 38 38 H 1.08996 * 109.58519 * 246.32142 * 13 12 10 39 39 H 1.09003 * 109.49294 * 174.51508 * 14 13 12 40 40 H 1.09001 * 109.49969 * 294.57596 * 14 13 12 41 41 H 1.08994 * 109.45986 * 58.65006 * 15 14 13 42 42 H 0.96999 * 120.00746 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.49643 * 181.31582 * 24 15 14 44 44 H 1.08994 * 109.49843 * 301.38341 * 24 15 14 45 45 H 1.09001 * 109.46843 * 113.75468 * 25 12 10 46 46 H 1.08997 * 109.71602 * 353.46961 * 25 12 10 47 47 H 1.08002 * 120.02911 * 0.03059 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0723 -1.1979 5 6 2.7236 3.3755 -1.2013 6 6 2.9499 4.0325 -0.0070 7 6 2.7251 3.3795 1.1959 8 8 2.9524 4.0216 2.3719 9 6 3.4281 5.3669 2.2950 10 6 3.6204 5.9119 3.6868 11 8 3.3739 5.2170 4.6497 12 7 4.0664 7.1718 3.8614 13 6 4.2594 7.7170 5.2121 14 6 5.6877 8.2585 5.3290 15 6 5.9416 9.2637 4.2032 16 6 7.3344 9.8238 4.3350 17 1 7.9743 9.4959 5.1410 18 6 7.7920 10.7546 3.4266 19 7 7.0128 11.1541 2.4454 20 14 9.5182 11.4493 3.5903 21 1 10.1865 10.8421 4.7693 22 1 10.2963 11.1356 2.3649 23 1 9.4446 12.9219 3.7665 24 6 5.7999 8.5633 2.8500 25 6 4.3734 8.0250 2.7050 26 6 2.2623 2.0714 1.1966 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 2.0818 1.5620 -2.1324 33 1 2.9027 3.8821 -2.1381 34 1 3.3058 5.0522 -0.0102 35 1 2.7008 5.9797 1.7625 36 1 4.3789 5.3861 1.7623 37 1 4.1058 6.9292 5.9496 38 1 3.5474 8.5238 5.3856 39 1 5.8117 8.7525 6.2927 40 1 6.3968 7.4346 5.2485 41 1 5.2164 10.0746 4.2701 42 1 7.3345 11.8093 1.8065 43 1 6.0038 9.2741 2.0493 44 1 6.5084 7.7370 2.7921 45 1 3.6708 8.8576 2.6711 46 1 4.2943 7.4426 1.7871 47 1 2.0826 1.5621 2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542909102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:11 Heat of formation + Delta-G solvation = -77.483949 kcal Electronic energy + Delta-G solvation = -26049.531865 eV Core-core repulsion = 22389.252189 eV Total energy + Delta-G solvation = -3660.279676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62412 -40.75379 -38.90258 -38.18729 -35.39054 -34.70809 -33.31473 -31.99429 -31.50037 -30.05441 -29.39633 -27.75077 -25.04737 -24.54595 -23.93925 -23.44126 -22.12825 -21.29968 -19.91910 -19.16031 -18.45630 -17.76025 -17.44723 -17.41566 -16.85473 -16.51907 -16.31762 -15.80205 -15.50738 -15.06754 -14.90584 -14.65110 -14.61159 -14.42211 -14.21812 -14.11736 -13.93148 -13.62526 -13.30256 -13.14372 -13.04176 -12.83163 -12.73341 -12.44914 -12.35210 -12.16882 -11.98703 -11.94384 -11.83918 -11.62738 -11.50120 -11.04710 -11.02422 -10.71313 -10.39941 -9.76481 -9.64783 -9.18051 -8.08792 -6.21005 0.36270 0.48037 1.39557 1.40734 1.43933 1.49814 1.53206 2.43829 2.48977 2.79408 3.18158 3.33324 3.79482 3.85206 3.96064 4.00043 4.10088 4.14966 4.22796 4.25950 4.32728 4.40097 4.45613 4.49349 4.53945 4.55156 4.66137 4.68470 4.76813 4.83786 4.95618 5.09595 5.10302 5.15147 5.16884 5.22090 5.34667 5.39940 5.40373 5.48385 5.50904 5.64274 5.67680 5.84214 5.98639 6.12656 6.30755 6.38831 6.42368 6.88052 7.01203 7.46649 8.94849 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.002448 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.112299 B =11435.015954 C =12258.184810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.047 4.047 4 C -0.159 4.159 5 C -0.078 4.078 6 C -0.223 4.223 7 C 0.109 3.891 8 O -0.319 6.319 9 C 0.048 3.952 10 C 0.512 3.488 11 O -0.576 6.576 12 N -0.597 5.597 13 C 0.118 3.882 14 C -0.114 4.114 15 C 0.044 3.956 16 C -0.534 4.534 17 H 0.045 0.955 18 C 0.019 3.981 19 N -0.910 5.910 20 Si 0.946 3.054 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.281 1.281 24 C -0.117 4.117 25 C 0.109 3.891 26 C -0.169 4.169 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.007 0.993 42 H 0.262 0.738 43 H 0.084 0.916 44 H 0.029 0.971 45 H 0.076 0.924 46 H 0.103 0.897 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.737 -16.431 -10.508 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.048 4.048 4 C -0.177 4.177 5 C -0.096 4.096 6 C -0.241 4.241 7 C 0.064 3.936 8 O -0.232 6.232 9 C -0.030 4.030 10 C 0.300 3.700 11 O -0.456 6.456 12 N -0.330 5.330 13 C -0.004 4.004 14 C -0.152 4.152 15 C 0.025 3.975 16 C -0.572 4.572 17 H 0.064 0.936 18 C -0.180 4.180 19 N -0.549 5.549 20 Si 0.773 3.227 21 H -0.199 1.199 22 H -0.206 1.206 23 H -0.207 1.207 24 C -0.156 4.156 25 C -0.012 4.012 26 C -0.188 4.188 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.160 0.840 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.121 0.879 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.891 -16.729 -9.947 22.808 hybrid contribution 1.299 1.044 0.339 1.700 sum -10.593 -15.685 -9.608 21.226 Atomic orbital electron populations 1.21735 0.94002 1.02590 1.01907 1.20627 0.96699 0.90937 1.03931 1.19975 0.96040 0.96977 0.91767 1.21287 1.02748 0.95446 0.98186 1.21301 0.95684 0.94689 0.97904 1.21528 1.08403 1.02148 0.92028 1.19329 0.96847 0.92855 0.84586 1.86093 1.81191 1.26715 1.29245 1.22585 1.02879 0.82711 0.94775 1.20491 0.77015 0.81388 0.91101 1.90666 1.52787 1.58565 1.43567 1.48198 1.63660 1.12325 1.08839 1.21629 0.97362 0.98303 0.83145 1.21866 0.94571 0.98593 1.00187 1.18627 0.95003 0.92350 0.91476 1.21559 1.00460 1.23471 1.11679 0.93638 1.25589 1.00538 0.96677 0.95193 1.69924 1.37127 1.32122 1.15748 0.85686 0.81002 0.78115 0.77896 1.19906 1.20573 1.20721 1.21807 0.93284 0.98682 1.01835 1.22051 0.97787 0.94243 0.87138 1.20452 1.06130 0.92744 0.99436 0.90851 0.93624 0.92235 0.89050 0.90817 0.83488 0.83100 0.83976 0.86201 0.87099 0.90323 0.90536 0.91640 0.94059 0.97466 0.92870 0.89745 0.95174 0.90575 0.87918 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.89 71.98 0.71 -1.01 16 2 C -0.08 -1.11 6.06 29.85 0.18 -0.93 16 3 C -0.05 -0.87 5.13 -19.88 -0.10 -0.97 16 4 C -0.16 -2.54 9.70 22.28 0.22 -2.33 16 5 C -0.08 -1.31 10.04 22.26 0.22 -1.08 16 6 C -0.22 -4.59 9.04 22.37 0.20 -4.39 16 7 C 0.11 2.81 6.69 22.51 0.15 2.96 16 8 O -0.32 -9.81 9.67 -73.36 -0.71 -10.52 16 9 C 0.05 1.27 3.57 71.24 0.25 1.52 16 10 C 0.51 17.56 7.78 87.66 0.68 18.24 16 11 O -0.58 -24.33 15.91 16.02 0.25 -24.07 16 12 N -0.60 -20.10 2.98 -818.91 -2.44 -22.54 16 13 C 0.12 4.16 6.43 86.36 0.56 4.71 16 14 C -0.11 -4.58 5.30 30.67 0.16 -4.42 16 15 C 0.04 2.04 2.06 -11.51 -0.02 2.02 16 16 C -0.53 -28.15 8.56 25.60 0.22 -27.93 16 17 H 0.05 2.43 7.74 -2.91 -0.02 2.40 16 18 C 0.02 1.00 5.30 84.65 0.45 1.45 16 19 N -0.91 -48.63 11.30 21.45 0.24 -48.39 16 20 Si 0.95 42.10 29.54 68.60 2.03 44.13 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 C -0.12 -4.89 5.15 30.66 0.16 -4.73 16 25 C 0.11 3.43 6.33 86.34 0.55 3.98 16 26 C -0.17 -4.02 9.64 22.37 0.22 -3.81 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.09 0.88 8.09 -2.38 -0.02 0.86 16 31 H 0.07 0.96 8.08 -2.39 -0.02 0.95 16 32 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.14 2.42 6.30 -2.91 -0.02 2.40 16 35 H 0.12 2.41 7.46 -2.39 -0.02 2.39 16 36 H 0.11 2.50 7.22 -2.39 -0.02 2.48 16 37 H 0.08 2.83 7.01 -2.39 -0.02 2.81 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 43 H 0.08 3.93 6.03 -2.39 -0.01 3.92 16 44 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.10 2.44 5.95 -2.39 -0.01 2.43 16 47 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -65.90 377.04 5.12 -60.78 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.95 Total: 17.32 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 4.80 Total: -16.70 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -2.20 Total: -70.93 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.45 Total: -34.60 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -65.90 5.12 -60.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542909102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.706 kcal (2) G-P(sol) polarization free energy of solvation -65.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds