Wall clock time and date at job start Tue Mar 31 2020 12:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46900 * 2 1 4 4 C 1.53004 * 109.46990 * 119.99687 * 2 1 3 5 5 C 1.50694 * 109.47170 * 304.99916 * 4 2 1 6 6 C 1.38235 * 120.00528 * 269.72757 * 5 4 2 7 7 C 1.38233 * 120.00378 * 179.77053 * 6 5 4 8 8 C 1.38238 * 119.99692 * 0.50241 * 7 6 5 9 9 C 1.38231 * 120.00037 * 359.75305 * 8 7 6 10 10 C 1.38236 * 120.00188 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47438 * 239.99953 * 2 1 3 12 12 O 1.21273 * 120.00012 * 253.14015 * 11 2 1 13 13 N 1.34775 * 119.99777 * 73.13248 * 11 2 1 14 14 C 1.46918 * 120.63246 * 3.61912 * 13 11 2 15 15 C 1.52765 * 109.00957 * 233.58252 * 14 13 11 16 16 C 1.53048 * 109.38013 * 305.58520 * 15 14 13 17 17 C 1.50700 * 109.44810 * 181.25140 * 16 15 14 18 18 H 1.07993 * 120.00326 * 245.34784 * 17 16 15 19 19 C 1.37881 * 119.99692 * 65.34802 * 17 16 15 20 20 N 1.31511 * 120.00327 * 355.43027 * 19 17 16 21 21 Si 1.86802 * 119.99868 * 175.42998 * 19 17 16 22 22 H 1.48503 * 109.47071 * 94.99751 * 21 19 17 23 23 H 1.48496 * 109.46906 * 214.99803 * 21 19 17 24 24 H 1.48502 * 109.46860 * 334.99770 * 21 19 17 25 25 C 1.53039 * 109.53581 * 61.24015 * 16 15 14 26 26 C 1.46925 * 120.63069 * 183.89238 * 13 11 2 27 27 H 1.08994 * 109.46696 * 59.99952 * 1 2 3 28 28 H 1.09003 * 109.47222 * 300.00113 * 1 2 3 29 29 H 1.08993 * 109.46905 * 179.97438 * 1 2 3 30 30 H 0.96705 * 113.99681 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46864 * 65.00255 * 4 2 1 32 32 H 1.09007 * 109.47033 * 185.00051 * 4 2 1 33 33 H 1.08001 * 119.99354 * 359.97438 * 6 5 4 34 34 H 1.07999 * 120.00013 * 180.23156 * 7 6 5 35 35 H 1.08005 * 120.00084 * 179.72585 * 8 7 6 36 36 H 1.08001 * 120.00180 * 179.97438 * 9 8 7 37 37 H 1.08001 * 119.99756 * 179.97438 * 10 9 8 38 38 H 1.09004 * 109.58955 * 353.41568 * 14 13 11 39 39 H 1.09005 * 109.58751 * 113.84062 * 14 13 11 40 40 H 1.09000 * 109.56598 * 185.55441 * 15 14 13 41 41 H 1.08999 * 109.39012 * 65.51290 * 15 14 13 42 42 H 1.08996 * 109.46271 * 301.21982 * 16 15 14 43 43 H 0.96993 * 120.00349 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.50053 * 178.68080 * 25 16 15 45 45 H 1.09006 * 109.52248 * 58.60117 * 25 16 15 46 46 H 1.09002 * 109.59398 * 246.16129 * 26 13 11 47 47 H 1.09007 * 109.58434 * 6.44712 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4391 -0.0858 2.4766 6 6 2.0908 0.9600 3.1030 7 6 1.5373 1.5459 4.2260 8 6 0.3371 1.0792 4.7287 9 6 -0.3120 0.0299 4.1054 10 6 0.2387 -0.5523 2.9790 11 6 2.0324 -0.7104 -1.2304 12 8 2.5217 -1.8159 -1.1350 13 7 1.9377 -0.1171 -2.4369 14 6 1.4203 1.2525 -2.5591 15 6 0.2762 1.2637 -3.5712 16 6 0.7582 0.6536 -4.8894 17 6 -0.3602 0.6919 -5.8987 18 1 -0.7889 -0.2291 -6.2650 19 6 -0.8362 1.9031 -6.3545 20 7 -0.3774 3.0245 -5.8433 21 14 -2.1329 1.9510 -7.6983 22 1 -3.4802 2.0552 -7.0826 23 1 -1.8960 3.1274 -8.5730 24 1 -2.0532 0.7084 -8.5076 25 6 1.1848 -0.7975 -4.6560 26 6 2.3444 -0.8300 -3.6555 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.9703 1.4237 0.0004 31 1 1.7516 -1.7714 1.2057 32 1 3.1264 -0.6443 1.2952 33 1 3.0309 1.3214 2.7131 34 1 2.0446 2.3654 4.7132 35 1 -0.0933 1.5340 5.6087 36 1 -1.2495 -0.3350 4.4983 37 1 -0.2683 -1.3724 2.4923 38 1 1.0530 1.5921 -1.5906 39 1 2.2154 1.9141 -2.9031 40 1 -0.0494 2.2897 -3.7428 41 1 -0.5568 0.6780 -3.1823 42 1 1.6065 1.2254 -5.2655 43 1 -0.7125 3.8764 -6.1636 44 1 1.5059 -1.2387 -5.5996 45 1 0.3438 -1.3647 -4.2568 46 1 3.2163 -0.3417 -4.0909 47 1 2.5890 -1.8635 -3.4099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543837959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:08 Heat of formation + Delta-G solvation = -83.759263 kcal Electronic energy + Delta-G solvation = -27511.547136 eV Core-core repulsion = 23850.995342 eV Total energy + Delta-G solvation = -3660.551794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.83465 -40.13168 -38.60031 -37.93313 -35.31546 -34.11457 -33.05792 -31.96031 -31.70246 -31.00924 -28.14488 -27.86829 -25.46656 -24.04869 -23.56784 -23.29570 -22.02795 -21.18880 -20.09170 -18.96652 -18.30394 -17.39655 -17.29946 -16.83787 -16.62202 -16.42870 -15.93411 -15.84237 -15.30273 -15.04269 -14.84858 -14.51379 -14.43263 -14.19505 -13.94364 -13.81494 -13.62252 -13.42195 -13.25935 -13.07519 -12.98157 -12.89929 -12.81210 -12.60090 -12.47173 -12.15175 -11.95958 -11.83394 -11.76068 -11.68541 -11.40293 -11.01150 -10.89376 -10.47747 -10.20882 -9.71033 -9.56177 -9.48937 -8.08528 -6.20734 0.50392 0.59835 1.40474 1.42763 1.45161 1.52299 2.03592 2.44009 2.94501 3.11267 3.19430 3.32157 3.81328 3.87150 4.00777 4.13500 4.18088 4.24852 4.31306 4.35980 4.38376 4.52018 4.53350 4.57999 4.70495 4.71859 4.76934 4.82615 4.87039 4.91392 4.95523 5.04550 5.13203 5.17653 5.21825 5.26162 5.29534 5.45014 5.53580 5.64923 5.65515 5.71091 5.78978 5.98102 6.12124 6.20516 6.38939 6.42864 6.62813 6.89388 7.09390 7.46763 8.95896 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.003232 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.308085 B = 8662.575422 C = 9354.376919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.143 3.857 3 O -0.539 6.539 4 C -0.082 4.082 5 C -0.082 4.082 6 C -0.114 4.114 7 C -0.129 4.129 8 C -0.132 4.132 9 C -0.130 4.130 10 C -0.128 4.128 11 C 0.486 3.514 12 O -0.579 6.579 13 N -0.588 5.588 14 C 0.104 3.896 15 C -0.112 4.112 16 C 0.046 3.954 17 C -0.535 4.535 18 H 0.047 0.953 19 C 0.018 3.982 20 N -0.911 5.911 21 Si 0.948 3.052 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.113 4.113 26 C 0.113 3.887 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.391 0.609 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.028 0.972 42 H 0.003 0.997 43 H 0.261 0.739 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 -2.760 19.906 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.099 3.901 3 O -0.347 6.347 4 C -0.121 4.121 5 C -0.082 4.082 6 C -0.132 4.132 7 C -0.147 4.147 8 C -0.150 4.150 9 C -0.147 4.147 10 C -0.146 4.146 11 C 0.274 3.726 12 O -0.460 6.460 13 N -0.319 5.319 14 C -0.017 4.017 15 C -0.151 4.151 16 C 0.028 3.972 17 C -0.573 4.573 18 H 0.065 0.935 19 C -0.182 4.182 20 N -0.551 5.551 21 Si 0.774 3.226 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.151 4.151 26 C -0.010 4.010 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.241 0.759 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.021 0.979 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.792 -2.998 19.908 20.487 hybrid contribution -0.202 0.025 -1.339 1.355 sum 3.590 -2.974 18.569 19.145 Atomic orbital electron populations 1.21968 0.90765 1.03301 1.04085 1.21107 0.96497 0.82599 0.89852 1.86589 1.28300 1.23653 1.96145 1.20943 1.01082 0.99758 0.90267 1.19669 0.95609 0.96990 0.95909 1.21211 1.00557 0.95571 0.95816 1.21419 0.96369 1.00304 0.96559 1.21451 0.95718 0.97103 1.00686 1.21388 1.00635 0.96886 0.95841 1.21264 0.95605 1.00711 0.96992 1.21872 0.78496 0.86276 0.85992 1.90634 1.46938 1.21747 1.86668 1.48287 1.61460 1.16206 1.05979 1.22219 0.96505 0.80652 1.02325 1.21715 0.95975 1.02147 0.95278 1.18608 0.94644 0.91026 0.92960 1.21528 1.19263 0.92104 1.24416 0.93516 1.25645 0.98511 0.95535 0.98468 1.69981 1.44555 0.97605 1.42921 0.85704 0.79606 0.77578 0.79714 1.20380 1.20823 1.19671 1.21847 0.96696 0.98882 0.97678 1.21634 0.97122 0.97509 0.84722 0.92145 0.89353 0.90549 0.75888 0.89931 0.89723 0.85132 0.84439 0.84386 0.84556 0.85731 0.85915 0.92358 0.91155 0.95348 0.97896 0.92969 0.91828 0.93947 0.91297 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 7.79 71.98 0.56 -3.13 16 2 C 0.14 3.58 0.64 -11.54 -0.01 3.57 16 3 O -0.54 -12.13 9.52 -148.98 -1.42 -13.55 16 4 C -0.08 -1.81 4.13 29.85 0.12 -1.69 16 5 C -0.08 -1.65 4.24 -19.87 -0.08 -1.74 16 6 C -0.11 -2.09 9.41 22.27 0.21 -1.88 16 7 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 8 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 9 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 10 C -0.13 -2.48 7.85 22.27 0.17 -2.30 16 11 C 0.49 15.51 6.67 87.66 0.58 16.09 16 12 O -0.58 -21.27 15.30 -3.01 -0.05 -21.32 16 13 N -0.59 -20.15 2.98 -819.74 -2.44 -22.59 16 14 C 0.10 3.70 5.05 86.22 0.44 4.13 16 15 C -0.11 -5.02 5.12 30.53 0.16 -4.86 16 16 C 0.05 2.23 2.01 -11.51 -0.02 2.21 16 17 C -0.54 -28.98 8.49 25.60 0.22 -28.77 16 18 H 0.05 2.53 7.75 -2.91 -0.02 2.51 16 19 C 0.02 0.95 5.36 84.66 0.45 1.41 16 20 N -0.91 -50.89 11.54 21.45 0.25 -50.64 16 21 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 C -0.11 -4.64 5.30 30.67 0.16 -4.48 16 26 C 0.11 4.03 6.42 86.36 0.55 4.58 16 27 H 0.06 1.78 5.99 -2.39 -0.01 1.77 16 28 H 0.09 2.09 6.14 -2.39 -0.01 2.07 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.39 6.35 9.04 -74.05 -0.67 5.69 16 31 H 0.08 1.98 7.72 -2.39 -0.02 1.96 16 32 H 0.08 1.72 8.08 -2.38 -0.02 1.70 16 33 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.12 2.22 8.03 -2.91 -0.02 2.20 16 38 H 0.12 3.93 3.64 -2.38 -0.01 3.93 16 39 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.07 3.56 6.31 -2.39 -0.02 3.54 16 41 H 0.03 1.28 7.80 -2.39 -0.02 1.26 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 44 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.08 2.86 7.03 -2.38 -0.02 2.84 16 Total: -1.00 -63.33 365.75 2.86 -60.48 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.30 Total: 25.22 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 4.19 Total: -22.64 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -2.19 Total: -73.23 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.46 Total: -34.87 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -63.33 2.86 -60.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543837959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.283 kcal (2) G-P(sol) polarization free energy of solvation -63.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds