Wall clock time and date at job start Tue Mar 31 2020 11:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00087 * 2 1 4 4 C 1.53000 * 109.47151 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47012 * 60.00224 * 3 2 1 6 6 O 1.21275 * 120.00482 * 226.72502 * 5 3 2 7 7 N 1.34784 * 120.00070 * 46.44955 * 5 3 2 8 8 C 1.46928 * 120.62423 * 6.18589 * 7 5 3 9 9 C 1.52766 * 109.00847 * 233.58404 * 8 7 5 10 10 C 1.53041 * 109.38134 * 305.59337 * 9 8 7 11 11 C 1.50704 * 109.44750 * 181.25246 * 10 9 8 12 12 H 1.07998 * 119.99542 * 245.07855 * 11 10 9 13 13 C 1.37880 * 119.99850 * 65.08016 * 11 10 9 14 14 N 1.31514 * 120.00003 * 7.63004 * 13 11 10 15 15 Si 1.86795 * 119.99764 * 187.62876 * 13 11 10 16 16 H 1.48499 * 109.47353 * 94.98294 * 15 13 11 17 17 H 1.48497 * 109.47133 * 214.98576 * 15 13 11 18 18 H 1.48505 * 109.47236 * 334.98393 * 15 13 11 19 19 C 1.53040 * 109.54153 * 61.23926 * 10 9 8 20 20 C 1.46917 * 120.63465 * 186.46717 * 7 5 3 21 21 C 1.50697 * 109.47293 * 300.00359 * 3 2 1 22 22 C 1.38236 * 120.00326 * 345.59194 * 21 3 2 23 23 C 1.38228 * 120.00253 * 179.76728 * 22 21 3 24 24 C 1.38237 * 120.00061 * 0.50191 * 23 22 21 25 25 C 1.38237 * 119.99952 * 359.75325 * 24 23 22 26 26 C 1.38237 * 119.99844 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99629 * 1 2 3 29 29 H 1.09000 * 109.47109 * 59.99407 * 1 2 3 30 30 H 1.08995 * 109.47569 * 304.74976 * 4 3 2 31 31 H 1.08998 * 109.47034 * 64.75154 * 4 3 2 32 32 H 1.09003 * 109.47204 * 184.74672 * 4 3 2 33 33 H 1.08995 * 109.59052 * 353.42390 * 8 7 5 34 34 H 1.09001 * 109.58605 * 113.84931 * 8 7 5 35 35 H 1.08996 * 109.56187 * 185.55645 * 9 8 7 36 36 H 1.09000 * 109.38348 * 65.51621 * 9 8 7 37 37 H 1.08997 * 109.46139 * 301.21730 * 10 9 8 38 38 H 0.96998 * 119.99983 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.50109 * 178.68161 * 19 10 9 40 40 H 1.08999 * 109.52406 * 58.59887 * 19 10 9 41 41 H 1.08999 * 109.59245 * 246.15929 * 20 7 5 42 42 H 1.09003 * 109.58427 * 6.44125 * 20 7 5 43 43 H 1.08000 * 119.99662 * 359.97438 * 22 21 3 44 44 H 1.08005 * 120.00434 * 180.23300 * 23 22 21 45 45 H 1.08001 * 120.00270 * 179.72531 * 24 23 22 46 46 H 1.08002 * 120.00135 * 179.97438 * 25 24 23 47 47 H 1.07997 * 120.00066 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5656 2.0532 1.2305 6 8 1.1674 3.1948 1.1356 7 7 1.6052 1.4515 2.4359 8 6 2.2040 0.1183 2.5876 9 6 1.1954 -0.8056 3.2679 10 6 0.7311 -0.1715 4.5811 11 6 -0.2407 -1.0957 5.2686 12 1 -1.2693 -0.7951 5.4023 13 6 0.1836 -2.3250 5.7268 14 7 1.4624 -2.6309 5.7006 15 14 -1.0580 -3.5558 6.3848 16 1 -1.4502 -4.4912 5.3002 17 1 -0.4512 -4.3212 7.5032 18 1 -2.2597 -2.8333 6.8740 19 6 0.0445 1.1648 4.2896 20 6 1.0451 2.1134 3.6219 21 6 1.5655 2.0533 -1.2304 22 6 0.9760 1.3715 -2.2784 23 6 0.5637 2.0582 -3.4050 24 6 0.7504 3.4254 -3.4880 25 6 1.3447 4.1066 -2.4422 26 6 1.7519 3.4206 -1.3132 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.8518 0.5719 0.8434 31 1 3.8626 0.7191 -0.9303 32 1 3.9786 2.1769 0.0844 33 1 2.4595 -0.2813 1.6063 34 1 3.1023 0.1889 3.2009 35 1 1.6635 -1.7681 3.4742 36 1 0.3378 -0.9513 2.6111 37 1 1.5922 -0.0037 5.2279 38 1 1.7608 -3.4959 6.0227 39 1 -0.3067 1.6047 5.2230 40 1 -0.8024 1.0015 3.6231 41 1 1.8469 2.3501 4.3212 42 1 0.5383 3.0310 3.3229 43 1 0.8345 0.3026 -2.2156 44 1 0.0997 1.5260 -4.2223 45 1 0.4323 3.9613 -4.3700 46 1 1.4909 5.1747 -2.5071 47 1 2.2166 3.9527 -0.4963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548516345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:02 Heat of formation + Delta-G solvation = -43.992830 kcal Electronic energy + Delta-G solvation = -28372.487396 eV Core-core repulsion = 24713.660004 eV Total energy + Delta-G solvation = -3658.827392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.04485 -38.86442 -37.35137 -36.84619 -33.49108 -32.84277 -31.28088 -30.87442 -30.18846 -29.50941 -26.42133 -26.25524 -24.57214 -23.02377 -22.62006 -22.35201 -21.35006 -19.74694 -18.51674 -17.59072 -16.89732 -16.29725 -15.98799 -15.67896 -15.42713 -15.00924 -14.55234 -14.40058 -14.04101 -13.98850 -13.60518 -13.30784 -13.05820 -12.89278 -12.75993 -12.57452 -12.42107 -12.30265 -12.20798 -11.92033 -11.68767 -11.51769 -11.24100 -11.04971 -10.96007 -10.86663 -10.66780 -10.40980 -10.20884 -10.13063 -9.63070 -9.21500 -9.09371 -8.80694 -8.77217 -8.71200 -8.35452 -8.03503 -6.05549 -4.07930 1.29100 1.44953 2.74338 3.27464 3.30104 3.35430 3.38391 3.72323 3.82111 4.41109 4.49467 4.64306 4.94471 4.98779 5.09308 5.16752 5.26452 5.45000 5.50481 5.51713 5.57574 5.61219 5.65074 5.70596 5.84192 5.91389 5.93631 5.94482 6.01025 6.07560 6.11010 6.12679 6.42042 6.44040 6.47253 6.53000 6.54180 6.62678 6.83296 6.97975 6.99452 7.08130 7.13819 7.24489 7.65700 7.87419 7.90232 7.96630 8.39460 8.42324 8.95692 9.56132 11.02854 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.003662 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.627517 B = 7644.310405 C = 7968.132193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.355 6.355 3 C 0.145 3.855 4 C -0.140 4.140 5 C 0.494 3.506 6 O -0.547 6.547 7 N -0.585 5.585 8 C 0.088 3.912 9 C -0.113 4.113 10 C 0.047 3.953 11 C -0.514 4.514 12 H 0.054 0.946 13 C 0.064 3.936 14 N -0.888 5.888 15 Si 0.886 3.114 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.122 4.122 20 C 0.109 3.891 21 C -0.107 4.107 22 C -0.104 4.104 23 C -0.133 4.133 24 C -0.117 4.117 25 C -0.131 4.131 26 C -0.070 4.070 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.033 0.967 38 H 0.260 0.740 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.130 0.870 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 8.068 -15.679 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.273 6.273 3 C 0.102 3.898 4 C -0.197 4.197 5 C 0.280 3.720 6 O -0.427 6.427 7 N -0.316 5.316 8 C -0.033 4.033 9 C -0.151 4.151 10 C 0.028 3.972 11 C -0.553 4.553 12 H 0.072 0.928 13 C -0.137 4.137 14 N -0.527 5.527 15 Si 0.714 3.286 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.160 4.160 20 C -0.013 4.013 21 C -0.107 4.107 22 C -0.122 4.122 23 C -0.151 4.151 24 C -0.135 4.135 25 C -0.150 4.150 26 C -0.088 4.088 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.792 8.333 -15.637 17.937 hybrid contribution -0.966 -0.659 0.514 1.277 sum 1.826 7.674 -15.123 17.057 Atomic orbital electron populations 1.23123 0.80430 1.03480 1.01232 1.87984 1.20551 1.24571 1.94216 1.20417 0.95873 0.83350 0.90197 1.21948 0.89880 1.03466 1.04408 1.20897 0.78877 0.87057 0.85176 1.90631 1.48259 1.17980 1.85804 1.48215 1.57001 1.19197 1.07175 1.22355 0.96962 0.81584 1.02429 1.21799 0.96666 0.99351 0.97293 1.18663 0.95927 0.89877 0.92729 1.21164 0.95984 1.00965 1.37147 0.92815 1.24941 0.94968 0.98325 0.95490 1.69935 1.13403 1.22133 1.47207 0.86672 0.81728 0.81610 0.78557 1.20745 1.21314 1.19970 1.21999 0.97276 0.97808 0.98888 1.21758 0.97231 0.96313 0.86020 1.19928 1.01199 0.94498 0.95116 1.21077 0.97735 1.00440 0.92928 1.21049 1.01474 0.94546 0.98022 1.21155 0.99137 0.94588 0.98641 1.21148 1.00053 0.99832 0.93923 1.21222 0.97548 0.93255 0.96824 0.88800 0.93244 0.92862 0.90043 0.90529 0.90617 0.88448 0.92403 0.89573 0.94011 0.94920 0.93020 0.92066 0.93244 0.92049 0.90540 0.85179 0.86188 0.86416 0.86214 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.30 101.05 0.94 1.13 16 2 O -0.35 -5.25 6.99 -35.23 -0.25 -5.49 16 3 C 0.14 2.10 0.53 -92.93 -0.05 2.05 16 4 C -0.14 -1.71 8.46 37.16 0.31 -1.40 16 5 C 0.49 8.44 5.14 -10.98 -0.06 8.38 16 6 O -0.55 -10.39 12.99 5.56 0.07 -10.32 16 7 N -0.58 -10.33 2.88 -173.03 -0.50 -10.83 16 8 C 0.09 1.58 4.97 -3.93 -0.02 1.56 16 9 C -0.11 -2.42 5.19 -26.83 -0.14 -2.56 16 10 C 0.05 1.09 1.93 -91.73 -0.18 0.92 16 11 C -0.51 -13.59 8.49 -34.44 -0.29 -13.88 16 12 H 0.05 1.43 7.76 -52.49 -0.41 1.02 16 13 C 0.06 1.72 5.22 -17.82 -0.09 1.63 16 14 N -0.89 -24.44 12.04 55.43 0.67 -23.77 16 15 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 19 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 20 C 0.11 1.97 6.42 -3.71 -0.02 1.95 16 21 C -0.11 -1.49 4.24 -104.62 -0.44 -1.93 16 22 C -0.10 -1.30 7.46 -39.59 -0.30 -1.59 16 23 C -0.13 -1.46 10.05 -39.59 -0.40 -1.86 16 24 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16 26 C -0.07 -0.97 8.18 -39.58 -0.32 -1.30 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.82 6.96 -51.93 -0.36 0.46 16 29 H 0.05 0.70 5.05 -51.93 -0.26 0.44 16 30 H 0.08 1.00 5.94 -51.93 -0.31 0.69 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.60 3.56 -51.93 -0.18 1.42 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 2.08 6.77 -51.93 -0.35 1.73 16 36 H 0.04 0.90 7.59 -51.93 -0.39 0.51 16 37 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.38 7.05 -51.93 -0.37 1.01 16 43 H 0.13 1.53 6.10 -52.49 -0.32 1.21 16 44 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 46 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 47 H 0.13 1.94 6.49 -52.49 -0.34 1.60 16 LS Contribution 357.58 15.07 5.39 5.39 Total: -1.00 -28.98 357.58 -8.71 -37.69 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.08 Total: 4.72 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.99 Total: -13.13 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.17 Total: -34.60 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.17 Total: -15.82 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.98 -8.71 -37.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548516345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.300 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds