Wall clock time and date at job start Tue Mar 31 2020 11:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00087 * 2 1 4 4 C 1.53000 * 109.47151 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47012 * 60.00224 * 3 2 1 6 6 O 1.21275 * 120.00482 * 226.72502 * 5 3 2 7 7 N 1.34784 * 120.00070 * 46.44955 * 5 3 2 8 8 C 1.46928 * 120.62423 * 6.18589 * 7 5 3 9 9 C 1.52766 * 109.00847 * 233.58404 * 8 7 5 10 10 C 1.53041 * 109.38134 * 305.59337 * 9 8 7 11 11 C 1.50704 * 109.44750 * 181.25246 * 10 9 8 12 12 H 1.07998 * 119.99542 * 245.07855 * 11 10 9 13 13 C 1.37880 * 119.99850 * 65.08016 * 11 10 9 14 14 N 1.31514 * 120.00003 * 7.63004 * 13 11 10 15 15 Si 1.86795 * 119.99764 * 187.62876 * 13 11 10 16 16 H 1.48499 * 109.47353 * 94.98294 * 15 13 11 17 17 H 1.48497 * 109.47133 * 214.98576 * 15 13 11 18 18 H 1.48505 * 109.47236 * 334.98393 * 15 13 11 19 19 C 1.53040 * 109.54153 * 61.23926 * 10 9 8 20 20 C 1.46917 * 120.63465 * 186.46717 * 7 5 3 21 21 C 1.50697 * 109.47293 * 300.00359 * 3 2 1 22 22 C 1.38236 * 120.00326 * 345.59194 * 21 3 2 23 23 C 1.38228 * 120.00253 * 179.76728 * 22 21 3 24 24 C 1.38237 * 120.00061 * 0.50191 * 23 22 21 25 25 C 1.38237 * 119.99952 * 359.75325 * 24 23 22 26 26 C 1.38237 * 119.99844 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99629 * 1 2 3 29 29 H 1.09000 * 109.47109 * 59.99407 * 1 2 3 30 30 H 1.08995 * 109.47569 * 304.74976 * 4 3 2 31 31 H 1.08998 * 109.47034 * 64.75154 * 4 3 2 32 32 H 1.09003 * 109.47204 * 184.74672 * 4 3 2 33 33 H 1.08995 * 109.59052 * 353.42390 * 8 7 5 34 34 H 1.09001 * 109.58605 * 113.84931 * 8 7 5 35 35 H 1.08996 * 109.56187 * 185.55645 * 9 8 7 36 36 H 1.09000 * 109.38348 * 65.51621 * 9 8 7 37 37 H 1.08997 * 109.46139 * 301.21730 * 10 9 8 38 38 H 0.96998 * 119.99983 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.50109 * 178.68161 * 19 10 9 40 40 H 1.08999 * 109.52406 * 58.59887 * 19 10 9 41 41 H 1.08999 * 109.59245 * 246.15929 * 20 7 5 42 42 H 1.09003 * 109.58427 * 6.44125 * 20 7 5 43 43 H 1.08000 * 119.99662 * 359.97438 * 22 21 3 44 44 H 1.08005 * 120.00434 * 180.23300 * 23 22 21 45 45 H 1.08001 * 120.00270 * 179.72531 * 24 23 22 46 46 H 1.08002 * 120.00135 * 179.97438 * 25 24 23 47 47 H 1.07997 * 120.00066 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5656 2.0532 1.2305 6 8 1.1674 3.1948 1.1356 7 7 1.6052 1.4515 2.4359 8 6 2.2040 0.1183 2.5876 9 6 1.1954 -0.8056 3.2679 10 6 0.7311 -0.1715 4.5811 11 6 -0.2407 -1.0957 5.2686 12 1 -1.2693 -0.7951 5.4023 13 6 0.1836 -2.3250 5.7268 14 7 1.4624 -2.6309 5.7006 15 14 -1.0580 -3.5558 6.3848 16 1 -1.4502 -4.4912 5.3002 17 1 -0.4512 -4.3212 7.5032 18 1 -2.2597 -2.8333 6.8740 19 6 0.0445 1.1648 4.2896 20 6 1.0451 2.1134 3.6219 21 6 1.5655 2.0533 -1.2304 22 6 0.9760 1.3715 -2.2784 23 6 0.5637 2.0582 -3.4050 24 6 0.7504 3.4254 -3.4880 25 6 1.3447 4.1066 -2.4422 26 6 1.7519 3.4206 -1.3132 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.8518 0.5719 0.8434 31 1 3.8626 0.7191 -0.9303 32 1 3.9786 2.1769 0.0844 33 1 2.4595 -0.2813 1.6063 34 1 3.1023 0.1889 3.2009 35 1 1.6635 -1.7681 3.4742 36 1 0.3378 -0.9513 2.6111 37 1 1.5922 -0.0037 5.2279 38 1 1.7608 -3.4959 6.0227 39 1 -0.3067 1.6047 5.2230 40 1 -0.8024 1.0015 3.6231 41 1 1.8469 2.3501 4.3212 42 1 0.5383 3.0310 3.3229 43 1 0.8345 0.3026 -2.2156 44 1 0.0997 1.5260 -4.2223 45 1 0.4323 3.9613 -4.3700 46 1 1.4909 5.1747 -2.5071 47 1 2.2166 3.9527 -0.4963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548516345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:01 Heat of formation + Delta-G solvation = -58.577476 kcal Electronic energy + Delta-G solvation = -28373.119834 eV Core-core repulsion = 24713.660004 eV Total energy + Delta-G solvation = -3659.459830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.26719 -40.03828 -38.49475 -38.39217 -35.30086 -33.95444 -32.98871 -31.88242 -31.67845 -30.56652 -28.15746 -27.39101 -25.94048 -24.40632 -24.03167 -23.52990 -22.62285 -21.17211 -19.99926 -18.84329 -18.33664 -17.97585 -17.26068 -16.79567 -16.63934 -16.43170 -16.13927 -15.51364 -15.38512 -15.17750 -14.88537 -14.65434 -14.58461 -14.35591 -14.17324 -13.88074 -13.60250 -13.48670 -13.28400 -13.20835 -13.14164 -12.89150 -12.76552 -12.60686 -12.48144 -12.18577 -12.04112 -11.95137 -11.89323 -11.51897 -11.28876 -10.95814 -10.89635 -10.43697 -10.15807 -9.72246 -9.67719 -9.55313 -8.10563 -6.19363 0.37120 0.53946 1.39591 1.40922 1.43382 1.51937 1.96665 2.44471 2.58495 2.87934 3.19310 3.33876 3.49864 3.97943 4.10382 4.13521 4.20657 4.24905 4.31069 4.32823 4.38465 4.41310 4.50278 4.55246 4.56724 4.61703 4.69187 4.73989 4.78410 4.80859 4.89732 4.99004 5.04371 5.11670 5.16046 5.18258 5.25428 5.40445 5.47749 5.57309 5.57587 5.63847 5.66896 5.94866 5.98235 6.05677 6.11319 6.38598 6.45022 6.90689 7.03823 7.47368 8.96687 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.003662 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.627517 B = 7644.310405 C = 7968.132193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.358 6.358 3 C 0.147 3.853 4 C -0.139 4.139 5 C 0.494 3.506 6 O -0.566 6.566 7 N -0.589 5.589 8 C 0.102 3.898 9 C -0.100 4.100 10 C 0.046 3.954 11 C -0.534 4.534 12 H 0.046 0.954 13 C 0.021 3.979 14 N -0.912 5.912 15 Si 0.944 3.056 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.111 4.111 20 C 0.114 3.886 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.131 4.131 24 C -0.115 4.115 25 C -0.137 4.137 26 C -0.090 4.090 27 H 0.106 0.894 28 H 0.022 0.978 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.036 0.964 37 H 0.004 0.996 38 H 0.261 0.739 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.136 0.864 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.137 0.863 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 8.217 -17.829 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.277 6.277 3 C 0.104 3.896 4 C -0.196 4.196 5 C 0.281 3.719 6 O -0.446 6.446 7 N -0.320 5.320 8 C -0.019 4.019 9 C -0.139 4.139 10 C 0.027 3.973 11 C -0.572 4.572 12 H 0.065 0.935 13 C -0.178 4.178 14 N -0.551 5.551 15 Si 0.771 3.229 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.149 4.149 20 C -0.008 4.008 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.133 4.133 25 C -0.155 4.155 26 C -0.108 4.108 27 H 0.125 0.875 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.154 0.846 44 H 0.165 0.835 45 H 0.165 0.835 46 H 0.155 0.845 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.433 8.489 -17.794 19.865 hybrid contribution -0.888 -0.646 1.151 1.591 sum 1.545 7.843 -16.643 18.463 Atomic orbital electron populations 1.23137 0.80273 1.04113 1.00504 1.87966 1.20753 1.24840 1.94106 1.20474 0.97029 0.82917 0.89186 1.21988 0.88298 1.04060 1.05238 1.21436 0.77986 0.86934 0.85511 1.90619 1.48900 1.18992 1.86113 1.48217 1.57304 1.19005 1.07472 1.22178 0.95656 0.81083 1.02993 1.21550 0.97102 0.98708 0.96515 1.18609 0.94576 0.91175 0.92943 1.21492 0.96175 1.01918 1.37655 0.93546 1.25604 0.96513 0.99849 0.95871 1.70036 1.14735 1.22496 1.47842 0.85755 0.79652 0.79471 0.78041 1.20160 1.21037 1.19726 1.21835 0.97286 0.96740 0.99070 1.21635 0.96982 0.95753 0.86414 1.19926 1.02497 0.94643 0.95282 1.21216 0.97864 1.00839 0.93178 1.21415 1.00516 0.94886 0.98084 1.21531 0.97913 0.94724 0.99118 1.21415 0.99672 1.00856 0.93582 1.21197 0.98765 0.93440 0.97419 0.87540 0.95951 0.91530 0.90200 0.88828 0.89975 0.86594 0.92300 0.92290 0.94476 0.97747 0.92969 0.91892 0.93955 0.91264 0.90169 0.84643 0.83478 0.83451 0.84507 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.30 113.37 1.05 1.48 16 2 O -0.36 -10.20 6.99 -148.98 -1.04 -11.24 16 3 C 0.15 4.12 0.53 -12.29 -0.01 4.11 16 4 C -0.14 -3.21 8.46 71.98 0.61 -2.60 16 5 C 0.49 16.70 5.14 87.66 0.45 17.16 16 6 O -0.57 -21.44 12.99 -3.01 -0.04 -21.48 16 7 N -0.59 -20.76 2.88 -819.73 -2.36 -23.12 16 8 C 0.10 3.66 4.97 86.22 0.43 4.09 16 9 C -0.10 -4.39 5.19 30.53 0.16 -4.23 16 10 C 0.05 2.19 1.93 -11.51 -0.02 2.17 16 11 C -0.53 -28.77 8.49 25.60 0.22 -28.55 16 12 H 0.05 2.50 7.76 -2.91 -0.02 2.48 16 13 C 0.02 1.13 5.22 84.66 0.44 1.58 16 14 N -0.91 -50.97 12.04 21.45 0.26 -50.71 16 15 Si 0.94 42.81 29.54 68.60 2.03 44.84 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 C -0.11 -4.58 5.30 30.67 0.16 -4.41 16 20 C 0.11 4.16 6.42 86.37 0.55 4.72 16 21 C -0.12 -3.26 4.24 -19.87 -0.08 -3.35 16 22 C -0.11 -2.58 7.46 22.27 0.17 -2.41 16 23 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 24 C -0.12 -2.10 10.05 22.27 0.22 -1.88 16 25 C -0.14 -2.97 10.05 22.27 0.22 -2.75 16 26 C -0.09 -2.40 8.18 22.27 0.18 -2.22 16 27 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.02 0.73 6.96 -2.39 -0.02 0.72 16 29 H 0.07 1.66 5.05 -2.39 -0.01 1.65 16 30 H 0.08 1.85 5.94 -2.39 -0.01 1.83 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.12 3.74 3.56 -2.39 -0.01 3.73 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 2.91 6.77 -2.39 -0.02 2.90 16 36 H 0.04 1.63 7.59 -2.39 -0.02 1.61 16 37 H 0.00 0.23 8.11 -2.39 -0.02 0.21 16 38 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 42 H 0.08 2.88 7.05 -2.39 -0.02 2.86 16 43 H 0.14 2.87 6.10 -2.91 -0.02 2.86 16 44 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 45 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 46 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 47 H 0.12 3.42 6.49 -2.91 -0.02 3.40 16 Total: -1.00 -62.44 357.58 4.79 -57.65 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.96 Total: 23.42 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 4.98 Total: -19.36 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -2.10 Total: -73.83 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.08 Total: -32.72 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -62.44 4.79 -57.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548516345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.930 kcal (2) G-P(sol) polarization free energy of solvation -62.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds