Wall clock time and date at job start Tue Mar 31 2020 12:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47342 * 2 1 4 4 C 1.38093 * 119.96072 * 265.00222 * 3 2 1 5 5 C 1.38504 * 120.39551 * 180.02562 * 4 3 2 6 6 C 1.37833 * 120.29410 * 359.97438 * 5 4 3 7 7 C 1.39667 * 119.91189 * 0.02901 * 6 5 4 8 8 C 1.47534 * 120.19410 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00339 * 218.28261 * 8 7 6 10 10 N 1.34773 * 120.00053 * 38.28375 * 8 7 6 11 11 C 1.46929 * 120.63349 * 184.77056 * 10 8 7 12 12 C 1.52756 * 109.00749 * 233.58289 * 11 10 8 13 13 C 1.53040 * 109.38457 * 305.58575 * 12 11 10 14 14 C 1.53001 * 109.46025 * 181.26250 * 13 12 11 15 15 C 1.50701 * 109.47192 * 64.93371 * 14 13 12 16 16 H 1.07998 * 119.99989 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99738 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00114 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99843 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47011 * 89.99692 * 19 17 15 21 21 H 1.48498 * 109.46980 * 209.99777 * 19 17 15 22 22 H 1.48504 * 109.46893 * 329.99553 * 19 17 15 23 23 C 1.53044 * 109.53793 * 61.23952 * 13 12 11 24 24 C 1.46932 * 120.63041 * 5.04729 * 10 8 7 25 25 C 1.38669 * 119.95803 * 85.02105 * 3 2 1 26 26 O 1.35656 * 120.14431 * 0.02568 * 25 3 2 27 27 H 1.08998 * 109.46892 * 59.99670 * 1 2 3 28 28 H 1.09001 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47353 * 300.00161 * 1 2 3 30 30 H 1.09004 * 109.46942 * 240.00337 * 2 1 3 31 31 H 1.08998 * 109.47413 * 120.00262 * 2 1 3 32 32 H 1.08002 * 119.80940 * 359.72314 * 4 3 2 33 33 H 1.07997 * 119.85397 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.04315 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.58278 * 353.41806 * 11 10 8 36 36 H 1.08999 * 109.58669 * 113.83815 * 11 10 8 37 37 H 1.08999 * 109.56464 * 185.54809 * 12 11 10 38 38 H 1.09001 * 109.36464 * 65.49833 * 12 11 10 39 39 H 1.09000 * 109.46015 * 301.22199 * 13 12 11 40 40 H 1.09004 * 109.47242 * 184.93216 * 14 13 12 41 41 H 1.09002 * 109.47237 * 304.92725 * 14 13 12 42 42 H 0.97000 * 119.99729 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.49531 * 178.68345 * 23 13 12 44 44 H 1.09000 * 109.49670 * 58.58819 * 23 13 12 45 45 H 1.08998 * 109.58341 * 246.15824 * 24 10 8 46 46 H 1.08995 * 109.58141 * 6.43735 * 24 10 8 47 47 H 0.96702 * 114.00046 * 90.00022 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3605 2.0362 -1.1918 5 6 2.8236 3.3415 -1.2023 6 6 2.9611 4.0399 -0.0220 7 6 2.6329 3.4297 1.1907 8 6 2.7782 4.1713 2.4578 9 8 3.1787 3.6004 3.4539 10 7 2.4671 5.4815 2.5113 11 6 2.7044 6.2580 3.7358 12 6 1.4066 6.9527 4.1438 13 6 0.8811 7.7787 2.9674 14 6 -0.4020 8.5004 3.3841 15 6 -0.0869 9.5007 4.4663 16 1 0.9270 9.6104 4.8216 17 6 -1.0933 10.2751 5.0035 18 7 -2.3281 10.1411 4.5711 19 14 -0.7029 11.5145 6.3454 20 1 -0.3650 12.8223 5.7283 21 1 -1.8848 11.6752 7.2299 22 1 0.4516 11.0313 7.1448 23 6 0.5848 6.8538 1.7845 24 6 1.8784 6.1592 1.3480 25 6 2.1649 2.1084 1.1969 26 8 1.8438 1.5047 2.3685 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.2602 1.4950 -2.1210 33 1 3.0773 3.8145 -2.1394 34 1 3.3222 5.0577 -0.0348 35 1 3.0267 5.5904 4.5350 36 1 3.4740 7.0072 3.5501 37 1 1.5953 7.6089 4.9934 38 1 0.6663 6.2021 4.4206 39 1 1.6319 8.5128 2.6750 40 1 -0.8240 9.0180 2.5226 41 1 -1.1222 7.7734 3.7596 42 1 -3.0360 10.6862 4.9488 43 1 0.1886 7.4396 0.9551 44 1 -0.1477 6.1040 2.0836 45 1 2.5793 6.9002 0.9636 46 1 1.6584 5.4269 0.5713 47 1 2.5805 1.0366 2.7847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568987797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:42 Heat of formation + Delta-G solvation = -70.633425 kcal Electronic energy + Delta-G solvation = -26892.803045 eV Core-core repulsion = 23232.820430 eV Total energy + Delta-G solvation = -3659.982615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85893 -39.23874 -37.29197 -36.77560 -34.54443 -33.86898 -32.14594 -31.23005 -30.17299 -29.27044 -28.01893 -25.06638 -24.22309 -23.80759 -22.56680 -21.88241 -21.21804 -19.97657 -18.89859 -18.28051 -17.03653 -16.54408 -16.20733 -15.87165 -15.77398 -14.99466 -14.82376 -14.52977 -14.17357 -13.95719 -13.83720 -13.63994 -13.38065 -13.19837 -12.85281 -12.79156 -12.52080 -12.26567 -12.23760 -11.99278 -11.64401 -11.62112 -11.20195 -11.16392 -11.01691 -10.78653 -10.69730 -10.65790 -10.40973 -10.16559 -9.72272 -9.62645 -9.27257 -9.06548 -8.93996 -8.77768 -8.35258 -8.32292 -5.99134 -4.00971 0.69469 0.98135 2.76511 3.07886 3.31900 3.38673 3.41477 3.49167 4.02736 4.38386 4.41285 4.46305 4.61493 4.84115 4.98070 5.08566 5.11736 5.15854 5.22341 5.35325 5.36463 5.39053 5.50854 5.59731 5.64167 5.64491 5.69625 5.74423 5.83553 5.96712 5.99058 6.03112 6.08039 6.09165 6.20885 6.36858 6.38705 6.48494 6.55167 6.68290 6.99811 7.03171 7.12853 7.53144 7.55057 7.67070 7.82173 8.00538 8.26123 8.43108 9.05418 9.62835 11.12173 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.002814 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.204479 B = 9947.001920 C =10059.191845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.118 4.118 4 C -0.084 4.084 5 C -0.135 4.135 6 C -0.080 4.080 7 C -0.152 4.152 8 C 0.564 3.436 9 O -0.542 6.542 10 N -0.598 5.598 11 C 0.110 3.890 12 C -0.119 4.119 13 C -0.080 4.080 14 C 0.028 3.972 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.131 4.131 24 C 0.095 3.905 25 C 0.163 3.837 26 O -0.483 6.483 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.963 -18.043 -13.786 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.119 4.119 4 C -0.102 4.102 5 C -0.153 4.153 6 C -0.099 4.099 7 C -0.156 4.156 8 C 0.352 3.648 9 O -0.420 6.420 10 N -0.330 5.330 11 C -0.012 4.012 12 C -0.157 4.157 13 C -0.099 4.099 14 C -0.009 4.009 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.169 4.169 24 C -0.027 4.027 25 C 0.117 3.883 26 O -0.294 6.294 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 10.442 -18.034 -13.302 24.723 hybrid contribution 0.431 0.762 0.792 1.181 sum 10.873 -17.272 -12.510 23.939 Atomic orbital electron populations 1.21734 0.94339 1.01730 1.02584 1.20387 0.96604 0.91653 1.02653 1.20203 1.01930 0.97303 0.92475 1.21089 0.97097 0.94857 0.97166 1.21083 1.01330 0.94736 0.98147 1.21415 0.97516 0.99852 0.91068 1.20389 1.05269 0.95587 0.94335 1.18040 0.77719 0.81459 0.87573 1.90728 1.47397 1.67873 1.36019 1.48038 1.61135 1.08642 1.15167 1.21715 0.98710 0.94520 0.86208 1.21820 0.95121 0.98918 0.99795 1.21196 1.00678 0.95402 0.92627 1.19121 0.90947 0.94638 0.96204 1.21238 0.94161 1.19960 1.20054 0.92590 1.25022 0.95118 0.97346 0.96993 1.69965 1.00080 1.40505 1.42968 0.86642 0.77851 0.81765 0.82029 1.20751 1.21302 1.19875 1.22038 0.95755 0.99228 0.99849 1.22241 0.95927 0.96722 0.87828 1.18220 0.94631 0.89593 0.85879 1.84706 1.39138 1.71221 1.34293 0.92703 0.92420 0.91920 0.91100 0.90890 0.85364 0.85116 0.84573 0.89582 0.91754 0.89678 0.92330 0.92343 0.96625 0.96632 0.93061 0.91014 0.91985 0.91390 0.89474 0.74616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.08 -0.59 5.78 -27.88 -0.16 -0.75 16 3 C -0.12 -1.16 5.14 -104.52 -0.54 -1.70 16 4 C -0.08 -0.69 9.66 -39.54 -0.38 -1.08 16 5 C -0.13 -1.13 10.02 -39.63 -0.40 -1.52 16 6 C -0.08 -0.83 7.35 -39.20 -0.29 -1.11 16 7 C -0.15 -2.00 5.22 -104.85 -0.55 -2.55 16 8 C 0.56 9.05 7.18 -12.47 -0.09 8.96 16 9 O -0.54 -10.07 15.48 -11.29 -0.17 -10.25 16 10 N -0.60 -9.22 2.98 -174.26 -0.52 -9.74 16 11 C 0.11 1.78 6.41 -3.93 -0.03 1.76 16 12 C -0.12 -2.23 5.17 -26.84 -0.14 -2.37 16 13 C -0.08 -1.58 2.10 -90.58 -0.19 -1.77 16 14 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 15 C -0.52 -14.18 8.39 -34.44 -0.29 -14.47 16 16 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.13 -2.15 5.36 -26.61 -0.14 -2.29 16 24 C 0.10 1.28 4.85 -3.71 -0.02 1.26 16 25 C 0.16 2.01 6.66 -38.70 -0.26 1.75 16 26 O -0.48 -6.15 11.36 -35.24 -0.40 -6.55 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 31 H 0.07 0.55 7.69 -51.93 -0.40 0.15 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.14 1.24 6.32 -52.48 -0.33 0.91 16 35 H 0.09 1.45 6.99 -51.93 -0.36 1.09 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.69 6.91 -51.93 -0.36 1.33 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 46 H 0.09 1.04 4.55 -51.93 -0.24 0.80 16 47 H 0.40 3.72 9.06 45.56 0.41 4.13 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -33.17 373.65 -9.76 -42.93 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.69 Total: 2.18 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -3.32 Total: -14.64 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.22 Total: -35.85 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.58 Total: -16.80 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.17 -9.76 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568987797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.701 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds