Wall clock time and date at job start Tue Mar 31 2020 12:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47342 * 2 1 4 4 C 1.38093 * 119.96072 * 265.00222 * 3 2 1 5 5 C 1.38504 * 120.39551 * 180.02562 * 4 3 2 6 6 C 1.37833 * 120.29410 * 359.97438 * 5 4 3 7 7 C 1.39667 * 119.91189 * 0.02901 * 6 5 4 8 8 C 1.47534 * 120.19410 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00339 * 218.28261 * 8 7 6 10 10 N 1.34773 * 120.00053 * 38.28375 * 8 7 6 11 11 C 1.46929 * 120.63349 * 184.77056 * 10 8 7 12 12 C 1.52756 * 109.00749 * 233.58289 * 11 10 8 13 13 C 1.53040 * 109.38457 * 305.58575 * 12 11 10 14 14 C 1.53001 * 109.46025 * 181.26250 * 13 12 11 15 15 C 1.50701 * 109.47192 * 64.93371 * 14 13 12 16 16 H 1.07998 * 119.99989 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99738 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00114 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99843 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47011 * 89.99692 * 19 17 15 21 21 H 1.48498 * 109.46980 * 209.99777 * 19 17 15 22 22 H 1.48504 * 109.46893 * 329.99553 * 19 17 15 23 23 C 1.53044 * 109.53793 * 61.23952 * 13 12 11 24 24 C 1.46932 * 120.63041 * 5.04729 * 10 8 7 25 25 C 1.38669 * 119.95803 * 85.02105 * 3 2 1 26 26 O 1.35656 * 120.14431 * 0.02568 * 25 3 2 27 27 H 1.08998 * 109.46892 * 59.99670 * 1 2 3 28 28 H 1.09001 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47353 * 300.00161 * 1 2 3 30 30 H 1.09004 * 109.46942 * 240.00337 * 2 1 3 31 31 H 1.08998 * 109.47413 * 120.00262 * 2 1 3 32 32 H 1.08002 * 119.80940 * 359.72314 * 4 3 2 33 33 H 1.07997 * 119.85397 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.04315 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.58278 * 353.41806 * 11 10 8 36 36 H 1.08999 * 109.58669 * 113.83815 * 11 10 8 37 37 H 1.08999 * 109.56464 * 185.54809 * 12 11 10 38 38 H 1.09001 * 109.36464 * 65.49833 * 12 11 10 39 39 H 1.09000 * 109.46015 * 301.22199 * 13 12 11 40 40 H 1.09004 * 109.47242 * 184.93216 * 14 13 12 41 41 H 1.09002 * 109.47237 * 304.92725 * 14 13 12 42 42 H 0.97000 * 119.99729 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.49531 * 178.68345 * 23 13 12 44 44 H 1.09000 * 109.49670 * 58.58819 * 23 13 12 45 45 H 1.08998 * 109.58341 * 246.15824 * 24 10 8 46 46 H 1.08995 * 109.58141 * 6.43735 * 24 10 8 47 47 H 0.96702 * 114.00046 * 90.00022 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3605 2.0362 -1.1918 5 6 2.8236 3.3415 -1.2023 6 6 2.9611 4.0399 -0.0220 7 6 2.6329 3.4297 1.1907 8 6 2.7782 4.1713 2.4578 9 8 3.1787 3.6004 3.4539 10 7 2.4671 5.4815 2.5113 11 6 2.7044 6.2580 3.7358 12 6 1.4066 6.9527 4.1438 13 6 0.8811 7.7787 2.9674 14 6 -0.4020 8.5004 3.3841 15 6 -0.0869 9.5007 4.4663 16 1 0.9270 9.6104 4.8216 17 6 -1.0933 10.2751 5.0035 18 7 -2.3281 10.1411 4.5711 19 14 -0.7029 11.5145 6.3454 20 1 -0.3650 12.8223 5.7283 21 1 -1.8848 11.6752 7.2299 22 1 0.4516 11.0313 7.1448 23 6 0.5848 6.8538 1.7845 24 6 1.8784 6.1592 1.3480 25 6 2.1649 2.1084 1.1969 26 8 1.8438 1.5047 2.3685 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.2602 1.4950 -2.1210 33 1 3.0773 3.8145 -2.1394 34 1 3.3222 5.0577 -0.0348 35 1 3.0267 5.5904 4.5350 36 1 3.4740 7.0072 3.5501 37 1 1.5953 7.6089 4.9934 38 1 0.6663 6.2021 4.4206 39 1 1.6319 8.5128 2.6750 40 1 -0.8240 9.0180 2.5226 41 1 -1.1222 7.7734 3.7596 42 1 -3.0360 10.6862 4.9488 43 1 0.1886 7.4396 0.9551 44 1 -0.1477 6.1040 2.0836 45 1 2.5793 6.9002 0.9636 46 1 1.6584 5.4269 0.5713 47 1 2.5805 1.0366 2.7847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568987797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:42 Heat of formation + Delta-G solvation = -90.163623 kcal Electronic energy + Delta-G solvation = -26893.649938 eV Core-core repulsion = 23232.820430 eV Total energy + Delta-G solvation = -3660.829508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.85784 -40.29366 -38.62782 -37.68159 -35.79730 -35.08226 -33.96073 -32.39918 -31.22728 -30.02014 -29.74793 -26.61886 -25.07621 -24.99518 -23.89366 -23.19337 -22.14148 -21.33092 -20.18422 -19.18251 -18.48365 -18.03850 -17.47448 -16.82807 -16.70983 -16.51316 -16.05530 -15.74894 -15.34895 -15.01535 -14.91353 -14.67505 -14.60451 -14.45563 -14.20865 -14.01482 -13.90945 -13.44349 -13.19329 -13.02069 -12.96097 -12.77178 -12.58944 -12.51490 -12.35397 -12.31599 -12.15569 -11.83029 -11.79734 -11.54785 -11.35912 -11.07696 -11.02346 -10.72965 -10.53087 -9.88066 -9.60292 -9.53546 -8.17975 -6.27359 -0.12486 0.25575 1.39476 1.40639 1.51191 1.66255 1.99006 2.41285 2.65059 3.15571 3.24289 3.39672 3.73376 3.88022 3.98544 3.99727 4.05720 4.16810 4.25465 4.31663 4.38116 4.46160 4.50466 4.52561 4.60174 4.62964 4.72106 4.76900 4.84470 4.94950 4.99439 5.04089 5.05738 5.10999 5.23985 5.27512 5.30367 5.35236 5.38168 5.40321 5.51942 5.54024 5.57567 5.78518 5.83318 5.88094 6.27704 6.36452 6.73382 6.89230 7.05986 7.41259 8.93962 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.002814 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.204479 B = 9947.001920 C =10059.191845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.123 4.123 4 C -0.076 4.076 5 C -0.126 4.126 6 C -0.083 4.083 7 C -0.181 4.181 8 C 0.558 3.442 9 O -0.579 6.579 10 N -0.601 5.601 11 C 0.119 3.881 12 C -0.111 4.111 13 C -0.072 4.072 14 C 0.033 3.967 15 C -0.529 4.529 16 H 0.064 0.936 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.959 3.041 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.263 1.263 23 C -0.126 4.126 24 C 0.102 3.898 25 C 0.139 3.861 26 O -0.503 6.503 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.150 0.850 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.070 0.930 40 H -0.007 1.007 41 H -0.021 1.021 42 H 0.261 0.739 43 H 0.084 0.916 44 H 0.039 0.961 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.896 -18.206 -16.414 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.123 4.123 4 C -0.093 4.093 5 C -0.144 4.144 6 C -0.101 4.101 7 C -0.184 4.184 8 C 0.348 3.652 9 O -0.460 6.460 10 N -0.333 5.333 11 C -0.003 4.003 12 C -0.149 4.149 13 C -0.090 4.090 14 C -0.004 4.004 15 C -0.567 4.567 16 H 0.082 0.918 17 C -0.200 4.200 18 N -0.577 5.577 19 Si 0.784 3.216 20 H -0.196 1.196 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.164 4.164 24 C -0.019 4.019 25 C 0.093 3.907 26 O -0.315 6.315 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.180 0.820 33 H 0.184 0.816 34 H 0.168 0.832 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.012 0.988 41 H -0.002 1.002 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.058 0.942 45 H 0.117 0.883 46 H 0.127 0.873 47 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 12.389 -18.197 -15.950 27.185 hybrid contribution -0.222 0.752 1.560 1.746 sum 12.167 -17.445 -14.390 25.679 Atomic orbital electron populations 1.21712 0.94849 1.02280 1.01355 1.20444 0.96043 0.90859 1.03836 1.20446 1.01682 0.98116 0.92100 1.21550 0.95080 0.95020 0.97696 1.21499 0.99619 0.94582 0.98655 1.21616 0.97206 1.00655 0.90622 1.20331 1.08126 0.96036 0.93920 1.18609 0.76775 0.81404 0.88388 1.90692 1.49098 1.68536 1.37707 1.48127 1.61131 1.08757 1.15270 1.21535 0.97343 0.94679 0.86785 1.21675 0.96021 0.98037 0.99152 1.21042 0.97918 0.95933 0.94141 1.19014 0.92828 0.93738 0.94811 1.21674 0.94552 1.20062 1.20372 0.91753 1.25957 0.94931 0.99583 0.99551 1.70106 1.01191 1.41804 1.44616 0.85529 0.77793 0.79299 0.78944 1.19638 1.21274 1.18757 1.21961 0.97279 0.98349 0.98821 1.22361 0.94598 0.97532 0.87415 1.18554 0.95839 0.89807 0.86478 1.84670 1.40086 1.71539 1.35210 0.92204 0.91032 0.94790 0.88461 0.91165 0.82018 0.81617 0.83198 0.90599 0.89381 0.91073 0.94934 0.91169 0.98833 1.00234 0.93005 0.89708 0.94170 0.88340 0.87341 0.73766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 71.98 0.71 -1.50 16 2 C -0.07 -1.02 5.78 29.85 0.17 -0.85 16 3 C -0.12 -2.16 5.14 -19.80 -0.10 -2.26 16 4 C -0.08 -0.95 9.66 22.30 0.22 -0.73 16 5 C -0.13 -1.55 10.02 22.24 0.22 -1.33 16 6 C -0.08 -1.46 7.35 22.52 0.17 -1.30 16 7 C -0.18 -4.60 5.22 -20.01 -0.10 -4.71 16 8 C 0.56 18.00 7.18 86.70 0.62 18.62 16 9 O -0.58 -22.32 15.48 11.84 0.18 -22.13 16 10 N -0.60 -18.17 2.98 -823.51 -2.45 -20.62 16 11 C 0.12 3.83 6.41 86.22 0.55 4.38 16 12 C -0.11 -4.28 5.17 30.53 0.16 -4.13 16 13 C -0.07 -2.84 2.10 -10.77 -0.02 -2.86 16 14 C 0.03 1.73 4.45 29.85 0.13 1.87 16 15 C -0.53 -29.61 8.39 25.60 0.21 -29.39 16 16 H 0.06 3.42 7.06 -2.91 -0.02 3.40 16 17 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 18 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 19 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 23 C -0.13 -4.09 5.36 30.67 0.16 -3.93 16 24 C 0.10 2.54 4.85 86.36 0.42 2.95 16 25 C 0.14 3.40 6.66 22.84 0.15 3.55 16 26 O -0.50 -13.46 11.36 -73.87 -0.84 -14.30 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.83 8.05 -2.38 -0.02 0.81 16 31 H 0.07 1.00 7.69 -2.39 -0.02 0.98 16 32 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.15 2.16 6.32 -2.91 -0.02 2.14 16 35 H 0.08 2.62 6.99 -2.39 -0.02 2.60 16 36 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.07 2.91 6.91 -2.39 -0.02 2.89 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 41 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.10 1.92 8.09 -2.39 -0.02 1.90 16 46 H 0.11 2.29 4.55 -2.39 -0.01 2.28 16 47 H 0.40 8.30 9.06 -74.06 -0.67 7.63 16 Total: -1.00 -75.71 373.65 3.64 -72.07 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.30 Total: 17.08 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.14 Total: -21.33 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -2.17 Total: -78.00 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.66 Total: -36.43 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -75.71 3.64 -72.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568987797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.090 kcal (2) G-P(sol) polarization free energy of solvation -75.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds