Wall clock time and date at job start Tue Mar 31 2020 12:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 C 1.50701 * 109.46966 * 120.00001 * 2 1 3 5 5 C 1.38169 * 120.02781 * 300.32177 * 4 2 1 6 6 C 1.38245 * 120.05301 * 180.30094 * 5 4 2 7 7 C 1.38288 * 120.11135 * 359.67452 * 6 5 4 8 8 C 1.38119 * 120.05616 * 0.02562 * 7 6 5 9 9 C 1.38708 * 120.02664 * 120.00266 * 4 2 1 10 10 O 1.35898 * 120.05829 * 0.02562 * 9 4 2 11 11 C 1.42903 * 117.00226 * 179.72898 * 10 9 4 12 12 C 1.50702 * 109.47071 * 179.97438 * 11 10 9 13 13 O 1.21285 * 119.99998 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99855 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99966 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47299 * 184.79547 * 15 14 12 17 17 C 1.50704 * 115.54588 * 294.81766 * 16 15 14 18 18 H 1.07999 * 119.99785 * 95.20816 * 17 16 15 19 19 C 1.37877 * 119.99726 * 274.92551 * 17 16 15 20 20 N 1.31515 * 120.00084 * 355.41881 * 19 17 16 21 21 Si 1.86796 * 120.00102 * 175.42113 * 19 17 16 22 22 H 1.48504 * 109.47025 * 89.99775 * 21 19 17 23 23 H 1.48493 * 109.47332 * 210.00070 * 21 19 17 24 24 H 1.48499 * 109.47076 * 330.00113 * 21 19 17 25 25 C 1.53001 * 117.49754 * 80.48183 * 16 15 14 26 26 C 1.52994 * 117.50156 * 149.14359 * 16 15 14 27 27 H 1.09001 * 109.47243 * 300.00022 * 1 2 3 28 28 H 1.09002 * 109.47186 * 60.00026 * 1 2 3 29 29 H 1.08997 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47243 * 239.99978 * 2 1 3 31 31 H 1.09004 * 109.47478 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47326 * 300.00180 * 3 2 1 33 33 H 1.09001 * 109.47065 * 59.99869 * 3 2 1 34 34 H 1.07998 * 119.97231 * 359.97438 * 5 4 2 35 35 H 1.08000 * 119.94501 * 179.69690 * 6 5 4 36 36 H 1.08005 * 119.96966 * 180.02562 * 7 6 5 37 37 H 1.08001 * 120.02869 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.47002 * 59.99739 * 11 10 9 39 39 H 1.09000 * 109.46519 * 299.99548 * 11 10 9 40 40 H 0.96999 * 119.99492 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.47302 * 64.79393 * 15 14 12 42 42 H 1.09005 * 109.46853 * 304.79585 * 15 14 12 43 43 H 0.97004 * 120.00173 * 185.00091 * 20 19 17 44 44 H 1.09003 * 117.49648 * 214.99946 * 25 16 15 45 45 H 1.08991 * 117.50066 * 0.03054 * 25 16 15 46 46 H 1.08996 * 117.49909 * 359.97438 * 26 16 15 47 47 H 1.09006 * 117.50020 * 144.97002 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6933 -0.2428 2.4857 6 6 2.1589 -0.8904 3.6148 7 6 2.9592 -2.0114 3.4912 8 6 3.2958 -2.4865 2.2388 9 6 2.8298 -1.8382 1.1039 10 8 3.1597 -2.3037 -0.1296 11 6 3.9890 -3.4661 -0.1839 12 6 4.2469 -3.8323 -1.6229 13 8 3.7673 -3.1640 -2.5141 14 7 5.0105 -4.9026 -1.9194 15 6 5.2617 -5.2583 -3.3182 16 6 6.0491 -6.5687 -3.3777 17 6 7.4418 -6.5167 -2.8042 18 1 7.6167 -6.8194 -1.7824 19 6 8.4937 -6.0882 -3.5860 20 7 8.2983 -5.8109 -4.8566 21 14 10.1961 -5.9015 -2.8403 22 1 10.9394 -7.1798 -2.9774 23 1 10.9312 -4.8231 -3.5486 24 1 10.0712 -5.5534 -1.4021 25 6 5.2652 -7.8721 -3.2121 26 6 5.8158 -7.4789 -4.5852 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.0685 0.6325 2.5847 35 1 1.8969 -0.5204 4.5951 36 1 3.3214 -2.5158 4.3749 37 1 3.9204 -3.3622 2.1428 38 1 3.4874 -4.2941 0.3171 39 1 4.9363 -3.2601 0.3143 40 1 5.3944 -5.4369 -1.2066 41 1 5.8377 -4.4662 -3.7967 42 1 4.3115 -5.3814 -3.8380 43 1 9.0505 -5.5797 -5.4238 44 1 5.7568 -8.6921 -2.6885 45 1 4.1884 -7.7961 -3.0612 46 1 5.1010 -7.1443 -5.3369 47 1 6.6698 -8.0398 -4.9651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581168486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:49 Heat of formation + Delta-G solvation = -40.371714 kcal Electronic energy + Delta-G solvation = -26072.770750 eV Core-core repulsion = 22414.100381 eV Total energy + Delta-G solvation = -3658.670369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.55404 -39.12344 -37.50461 -36.60253 -35.43788 -33.42202 -32.01633 -30.34016 -30.13889 -28.46663 -27.19798 -26.04521 -25.01238 -23.58359 -22.21711 -21.22367 -20.35513 -19.81554 -19.34616 -18.22846 -17.10692 -16.28776 -16.13923 -16.03435 -15.55646 -14.97562 -14.75368 -14.50837 -14.34562 -14.13666 -13.96633 -13.74713 -13.44803 -13.15347 -12.83108 -12.53900 -12.52073 -12.21429 -12.08858 -11.83967 -11.79526 -11.63396 -11.21990 -11.09155 -11.04332 -10.98178 -10.68459 -10.63517 -10.57620 -10.28529 -9.67130 -9.37601 -9.10958 -8.97339 -8.55531 -8.36830 -8.22394 -8.17443 -6.12580 -4.23135 1.18529 1.32629 2.77827 3.00019 3.21858 3.30589 3.31052 3.62451 3.99305 4.30539 4.51221 4.67299 4.80463 4.91200 5.02666 5.08768 5.11067 5.13952 5.15756 5.16756 5.25144 5.34325 5.41476 5.52907 5.54033 5.72786 5.74409 5.91094 5.96600 5.98781 6.10231 6.18968 6.25465 6.27959 6.37754 6.40978 6.48947 6.50163 6.64572 6.65396 6.78537 7.07324 7.13561 7.31920 7.32958 7.48265 7.75598 8.12573 8.27554 8.69815 8.78666 9.44558 10.94445 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016509 B = 0.002758 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.665738 B =10148.611006 C =10561.663464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.104 4.104 5 C -0.080 4.080 6 C -0.160 4.160 7 C -0.085 4.085 8 C -0.209 4.209 9 C 0.134 3.866 10 O -0.285 6.285 11 C 0.040 3.960 12 C 0.506 3.494 13 O -0.534 6.534 14 N -0.699 5.699 15 C 0.165 3.835 16 C 0.023 3.977 17 C -0.503 4.503 18 H 0.060 0.940 19 C 0.074 3.926 20 N -0.873 5.873 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.211 4.211 26 C -0.141 4.141 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.402 0.598 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.262 0.738 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.019 8.414 14.924 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.198 4.198 4 C -0.105 4.105 5 C -0.098 4.098 6 C -0.179 4.179 7 C -0.103 4.103 8 C -0.228 4.228 9 C 0.088 3.912 10 O -0.197 6.197 11 C -0.038 4.038 12 C 0.290 3.710 13 O -0.411 6.411 14 N -0.349 5.349 15 C 0.043 3.957 16 C 0.022 3.978 17 C -0.540 4.540 18 H 0.078 0.922 19 C -0.131 4.131 20 N -0.509 5.509 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.248 4.248 26 C -0.179 4.179 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.236 0.764 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.322 9.099 13.887 20.675 hybrid contribution 1.439 -0.472 0.860 1.741 sum -10.883 8.627 14.747 20.257 Atomic orbital electron populations 1.21829 0.94536 1.01880 1.01492 1.20022 0.95610 0.95801 0.96122 1.21829 1.01333 0.95128 1.01481 1.19242 1.00265 0.95256 0.95716 1.20806 0.98696 0.99234 0.91023 1.21006 1.00970 0.97440 0.98442 1.20910 0.96860 0.95930 0.96608 1.21293 1.05840 1.03105 0.92542 1.18924 0.94836 0.93533 0.83911 1.86156 1.65209 1.43120 1.25196 1.22566 0.95825 0.88211 0.97233 1.19876 0.80053 0.81678 0.89441 1.90710 1.50642 1.51292 1.48445 1.45846 1.49914 1.28325 1.10848 1.21051 0.97110 0.98530 0.79058 1.19036 0.93974 0.85405 0.99340 1.20342 0.90023 1.45303 0.98359 0.92167 1.24996 0.98857 0.94331 0.94892 1.69985 1.31119 1.45129 1.04676 0.86620 0.84271 0.77874 0.79420 1.20664 1.21136 1.19792 1.23026 0.97242 1.01842 1.02709 1.22470 1.00936 1.04695 0.89822 0.92865 0.92404 0.92634 0.88959 0.92578 0.92389 0.92879 0.85629 0.86139 0.85926 0.85299 0.89323 0.89119 0.76374 0.91240 0.93949 0.92793 0.90343 0.91695 0.91770 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.00 37.16 0.33 -1.04 16 2 C -0.06 -0.67 3.06 -91.77 -0.28 -0.95 16 3 C -0.14 -1.41 9.01 37.16 0.33 -1.08 16 4 C -0.10 -1.26 4.79 -104.47 -0.50 -1.76 16 5 C -0.08 -0.80 8.71 -39.60 -0.35 -1.14 16 6 C -0.16 -1.49 10.04 -39.56 -0.40 -1.89 16 7 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 8 C -0.21 -2.34 9.04 -39.43 -0.36 -2.70 16 9 C 0.13 1.78 6.66 -39.22 -0.26 1.52 16 10 O -0.28 -4.41 8.44 -39.33 -0.33 -4.74 16 11 C 0.04 0.55 5.22 36.01 0.19 0.74 16 12 C 0.51 9.23 7.91 -10.98 -0.09 9.14 16 13 O -0.53 -12.00 16.50 -14.36 -0.24 -12.24 16 14 N -0.70 -12.87 5.48 -60.29 -0.33 -13.20 16 15 C 0.17 3.63 5.50 -4.04 -0.02 3.61 16 16 C 0.02 0.53 1.47 -155.66 -0.23 0.30 16 17 C -0.50 -12.54 8.59 -34.44 -0.30 -12.84 16 18 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 19 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 20 N -0.87 -23.80 12.65 55.43 0.70 -23.10 16 21 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.21 -4.26 9.96 -26.69 -0.27 -4.53 16 26 C -0.14 -3.17 9.14 -26.70 -0.24 -3.41 16 27 H 0.05 0.44 7.37 -51.93 -0.38 0.06 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.33 6.99 -51.93 -0.36 0.97 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.45 7.41 -51.93 -0.38 0.07 16 34 H 0.13 1.00 7.10 -52.49 -0.37 0.63 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 38 H 0.09 0.97 7.66 -51.93 -0.40 0.57 16 39 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 40 H 0.40 6.55 8.33 -40.82 -0.34 6.21 16 41 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 43 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 44 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -30.10 389.96 -9.85 -39.95 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.59 Total: 7.76 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -2.92 Total: -15.43 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.37 Total: -36.30 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.57 Total: -16.97 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.10 -9.85 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581168486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.419 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds