Wall clock time and date at job start Tue Mar 31 2020 12:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 C 1.50701 * 109.46966 * 120.00001 * 2 1 3 5 5 C 1.38169 * 120.02781 * 300.32177 * 4 2 1 6 6 C 1.38245 * 120.05301 * 180.30094 * 5 4 2 7 7 C 1.38288 * 120.11135 * 359.67452 * 6 5 4 8 8 C 1.38119 * 120.05616 * 0.02562 * 7 6 5 9 9 C 1.38708 * 120.02664 * 120.00266 * 4 2 1 10 10 O 1.35898 * 120.05829 * 0.02562 * 9 4 2 11 11 C 1.42903 * 117.00226 * 179.72898 * 10 9 4 12 12 C 1.50702 * 109.47071 * 179.97438 * 11 10 9 13 13 O 1.21285 * 119.99998 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99855 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99966 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47299 * 184.79547 * 15 14 12 17 17 C 1.50704 * 115.54588 * 294.81766 * 16 15 14 18 18 H 1.07999 * 119.99785 * 95.20816 * 17 16 15 19 19 C 1.37877 * 119.99726 * 274.92551 * 17 16 15 20 20 N 1.31515 * 120.00084 * 355.41881 * 19 17 16 21 21 Si 1.86796 * 120.00102 * 175.42113 * 19 17 16 22 22 H 1.48504 * 109.47025 * 89.99775 * 21 19 17 23 23 H 1.48493 * 109.47332 * 210.00070 * 21 19 17 24 24 H 1.48499 * 109.47076 * 330.00113 * 21 19 17 25 25 C 1.53001 * 117.49754 * 80.48183 * 16 15 14 26 26 C 1.52994 * 117.50156 * 149.14359 * 16 15 14 27 27 H 1.09001 * 109.47243 * 300.00022 * 1 2 3 28 28 H 1.09002 * 109.47186 * 60.00026 * 1 2 3 29 29 H 1.08997 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47243 * 239.99978 * 2 1 3 31 31 H 1.09004 * 109.47478 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47326 * 300.00180 * 3 2 1 33 33 H 1.09001 * 109.47065 * 59.99869 * 3 2 1 34 34 H 1.07998 * 119.97231 * 359.97438 * 5 4 2 35 35 H 1.08000 * 119.94501 * 179.69690 * 6 5 4 36 36 H 1.08005 * 119.96966 * 180.02562 * 7 6 5 37 37 H 1.08001 * 120.02869 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.47002 * 59.99739 * 11 10 9 39 39 H 1.09000 * 109.46519 * 299.99548 * 11 10 9 40 40 H 0.96999 * 119.99492 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.47302 * 64.79393 * 15 14 12 42 42 H 1.09005 * 109.46853 * 304.79585 * 15 14 12 43 43 H 0.97004 * 120.00173 * 185.00091 * 20 19 17 44 44 H 1.09003 * 117.49648 * 214.99946 * 25 16 15 45 45 H 1.08991 * 117.50066 * 0.03054 * 25 16 15 46 46 H 1.08996 * 117.49909 * 359.97438 * 26 16 15 47 47 H 1.09006 * 117.50020 * 144.97002 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6933 -0.2428 2.4857 6 6 2.1589 -0.8904 3.6148 7 6 2.9592 -2.0114 3.4912 8 6 3.2958 -2.4865 2.2388 9 6 2.8298 -1.8382 1.1039 10 8 3.1597 -2.3037 -0.1296 11 6 3.9890 -3.4661 -0.1839 12 6 4.2469 -3.8323 -1.6229 13 8 3.7673 -3.1640 -2.5141 14 7 5.0105 -4.9026 -1.9194 15 6 5.2617 -5.2583 -3.3182 16 6 6.0491 -6.5687 -3.3777 17 6 7.4418 -6.5167 -2.8042 18 1 7.6167 -6.8194 -1.7824 19 6 8.4937 -6.0882 -3.5860 20 7 8.2983 -5.8109 -4.8566 21 14 10.1961 -5.9015 -2.8403 22 1 10.9394 -7.1798 -2.9774 23 1 10.9312 -4.8231 -3.5486 24 1 10.0712 -5.5534 -1.4021 25 6 5.2652 -7.8721 -3.2121 26 6 5.8158 -7.4789 -4.5852 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.0685 0.6325 2.5847 35 1 1.8969 -0.5204 4.5951 36 1 3.3214 -2.5158 4.3749 37 1 3.9204 -3.3622 2.1428 38 1 3.4874 -4.2941 0.3171 39 1 4.9363 -3.2601 0.3143 40 1 5.3944 -5.4369 -1.2066 41 1 5.8377 -4.4662 -3.7967 42 1 4.3115 -5.3814 -3.8380 43 1 9.0505 -5.5797 -5.4238 44 1 5.7568 -8.6921 -2.6885 45 1 4.1884 -7.7961 -3.0612 46 1 5.1010 -7.1443 -5.3369 47 1 6.6698 -8.0398 -4.9651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581168486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:47 Heat of formation + Delta-G solvation = -55.833752 kcal Electronic energy + Delta-G solvation = -26073.441234 eV Core-core repulsion = 22414.100381 eV Total energy + Delta-G solvation = -3659.340853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.53095 -40.51102 -38.71978 -38.16166 -36.24301 -35.06193 -33.96493 -31.27236 -30.97621 -29.61888 -27.99156 -27.81146 -26.69707 -24.42200 -23.13215 -22.91001 -21.59474 -21.25129 -20.80262 -19.16228 -18.58615 -17.73901 -17.40350 -17.19154 -16.65933 -16.41274 -16.36320 -15.86885 -15.45106 -15.32865 -14.98273 -14.78480 -14.66724 -14.35121 -14.32136 -13.74335 -13.63175 -13.48064 -13.26882 -12.96814 -12.93018 -12.87843 -12.81640 -12.53593 -12.36889 -12.10358 -12.02767 -12.00312 -11.52541 -11.50004 -11.40035 -10.97965 -10.94815 -10.45138 -10.09148 -9.91564 -9.74021 -9.07733 -8.09869 -6.24565 0.41752 0.52033 1.42314 1.45564 1.52998 1.54111 1.63140 2.41882 2.74733 2.84783 3.18325 3.46316 3.68121 3.73222 3.90697 3.99929 4.09593 4.16425 4.22989 4.27802 4.32458 4.35462 4.53045 4.53188 4.59480 4.63482 4.71003 4.76363 4.79434 4.90643 4.96634 4.97324 5.01668 5.12845 5.21521 5.28079 5.30028 5.38161 5.48646 5.50123 5.54828 5.61956 5.65733 5.68304 5.77605 5.89581 6.35278 6.40248 6.66262 6.84062 7.25217 7.45850 8.97023 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016509 B = 0.002758 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.665738 B =10148.611006 C =10561.663464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 C -0.136 4.136 4 C -0.122 4.122 5 C -0.082 4.082 6 C -0.156 4.156 7 C -0.089 4.089 8 C -0.214 4.214 9 C 0.101 3.899 10 O -0.316 6.316 11 C 0.050 3.950 12 C 0.504 3.496 13 O -0.584 6.584 14 N -0.691 5.691 15 C 0.180 3.820 16 C 0.003 3.997 17 C -0.505 4.505 18 H 0.068 0.932 19 C 0.023 3.977 20 N -0.908 5.908 21 Si 0.949 3.051 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.261 1.261 25 C -0.175 4.175 26 C -0.155 4.155 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.415 0.585 41 H 0.027 0.973 42 H 0.039 0.961 43 H 0.258 0.742 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.697 8.406 18.711 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.077 4.077 3 C -0.193 4.193 4 C -0.122 4.122 5 C -0.099 4.099 6 C -0.174 4.174 7 C -0.106 4.106 8 C -0.233 4.233 9 C 0.056 3.944 10 O -0.230 6.230 11 C -0.028 4.028 12 C 0.290 3.710 13 O -0.464 6.464 14 N -0.342 5.342 15 C 0.056 3.944 16 C 0.003 3.997 17 C -0.542 4.542 18 H 0.086 0.914 19 C -0.178 4.178 20 N -0.546 5.546 21 Si 0.775 3.225 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.185 1.185 25 C -0.212 4.212 26 C -0.194 4.194 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.252 0.748 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.086 0.914 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.996 9.067 17.728 23.778 hybrid contribution 1.594 -0.448 -0.274 1.678 sum -11.402 8.619 17.455 22.560 Atomic orbital electron populations 1.21791 0.93164 1.01498 1.02761 1.19972 0.96771 0.96236 0.94762 1.21798 1.00334 0.94418 1.02773 1.19466 1.00736 0.95431 0.96598 1.21075 0.98708 0.99864 0.90296 1.21415 0.99733 0.96807 0.99448 1.21293 0.96425 0.96048 0.96875 1.21534 1.05835 1.03471 0.92462 1.19236 0.96638 0.94838 0.83660 1.86109 1.65959 1.43814 1.27097 1.22521 0.97435 0.89267 0.93567 1.20698 0.78598 0.80496 0.91222 1.90686 1.52448 1.52740 1.50533 1.45669 1.50007 1.28789 1.09727 1.20602 0.96016 0.96883 0.80868 1.19055 0.94023 0.86592 1.00073 1.20696 0.90937 1.44027 0.98586 0.91382 1.25727 1.02346 0.94479 0.95203 1.70118 1.31754 1.46787 1.05935 0.85686 0.80273 0.77435 0.79063 1.20295 1.22085 1.18494 1.23012 0.98284 0.99930 1.00010 1.22393 1.00775 1.05282 0.90913 0.90723 0.91949 0.93821 0.92914 0.94087 0.91929 0.90700 0.83496 0.83269 0.83270 0.83834 0.85974 0.86748 0.74813 0.95474 0.94294 0.93257 0.89442 0.89346 0.91422 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.00 71.98 0.65 -1.93 16 2 C -0.06 -1.40 3.06 -11.54 -0.04 -1.43 16 3 C -0.14 -2.69 9.01 71.98 0.65 -2.04 16 4 C -0.12 -2.86 4.79 -19.77 -0.09 -2.95 16 5 C -0.08 -1.43 8.71 22.25 0.19 -1.23 16 6 C -0.16 -2.34 10.04 22.28 0.22 -2.12 16 7 C -0.09 -1.42 10.04 22.25 0.22 -1.19 16 8 C -0.21 -4.31 9.04 22.37 0.20 -4.11 16 9 C 0.10 2.62 6.66 22.51 0.15 2.77 16 10 O -0.32 -9.94 8.44 -73.36 -0.62 -10.56 16 11 C 0.05 1.32 5.22 71.24 0.37 1.69 16 12 C 0.50 18.54 7.91 87.66 0.69 19.23 16 13 O -0.58 -27.41 16.50 15.99 0.26 -27.15 16 14 N -0.69 -25.26 5.48 -463.05 -2.54 -27.80 16 15 C 0.18 8.11 5.50 86.38 0.48 8.58 16 16 C 0.00 0.15 1.47 -52.93 -0.08 0.07 16 17 C -0.50 -24.98 8.59 25.60 0.22 -24.76 16 18 H 0.07 3.19 7.82 -2.91 -0.02 3.17 16 19 C 0.02 1.21 5.43 84.65 0.46 1.67 16 20 N -0.91 -50.90 12.65 21.45 0.27 -50.63 16 21 Si 0.95 41.39 29.54 68.60 2.03 43.42 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 25 C -0.18 -6.77 9.96 30.62 0.30 -6.47 16 26 C -0.16 -7.03 9.14 30.62 0.28 -6.75 16 27 H 0.07 1.08 7.37 -2.39 -0.02 1.07 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.65 6.99 -2.39 -0.02 1.63 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.13 7.41 -2.39 -0.02 1.11 16 34 H 0.15 1.83 7.10 -2.91 -0.02 1.81 16 35 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.14 2.30 6.30 -2.91 -0.02 2.29 16 38 H 0.12 2.38 7.66 -2.39 -0.02 2.36 16 39 H 0.11 2.46 7.66 -2.39 -0.02 2.44 16 40 H 0.42 12.88 8.33 -92.71 -0.77 12.11 16 41 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.04 1.75 8.09 -2.38 -0.02 1.73 16 43 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 44 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 45 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 47 H 0.06 3.21 8.14 -2.38 -0.02 3.19 16 Total: -1.00 -68.21 389.96 4.48 -63.73 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.19 Total: 29.96 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 4.89 Total: -20.96 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.27 Total: -78.43 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.36 Total: -37.71 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -68.21 4.48 -63.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581168486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.898 kcal (2) G-P(sol) polarization free energy of solvation -68.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds