Wall clock time and date at job start Tue Mar 31 2020 12:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47198 * 2 1 4 4 C 1.38556 * 119.80426 * 269.97635 * 3 2 1 5 5 C 1.37789 * 120.30152 * 179.72258 * 4 3 2 6 6 C 1.39705 * 119.90308 * 0.57348 * 5 4 3 7 7 C 1.47537 * 120.18751 * 179.72263 * 6 5 4 8 8 O 1.21594 * 119.99722 * 132.28597 * 7 6 5 9 9 N 1.34773 * 120.00558 * 312.28815 * 7 6 5 10 10 C 1.46923 * 120.62568 * 354.97891 * 9 7 6 11 11 C 1.53188 * 108.77880 * 233.58756 * 10 9 7 12 12 C 1.53045 * 109.31287 * 305.37030 * 11 10 9 13 13 C 1.53005 * 109.45826 * 181.38316 * 12 11 10 14 14 C 1.50702 * 109.47249 * 64.93230 * 13 12 11 15 15 H 1.08001 * 120.00052 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99817 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00002 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 119.99683 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47570 * 60.00162 * 18 16 14 20 20 H 1.48509 * 109.47041 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47418 * 299.99830 * 18 16 14 22 22 C 1.53033 * 109.53928 * 61.36260 * 12 11 10 23 23 C 1.46928 * 120.63433 * 174.96371 * 9 7 6 24 24 C 1.40136 * 119.62339 * 359.45199 * 6 5 4 25 25 O 1.35654 * 120.15333 * 180.22868 * 24 6 5 26 26 C 1.38051 * 119.80805 * 89.99704 * 3 2 1 27 27 H 1.09003 * 109.46924 * 300.00376 * 1 2 3 28 28 H 1.09002 * 109.47187 * 59.99815 * 1 2 3 29 29 H 1.08999 * 109.47434 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46924 * 239.99624 * 2 1 3 31 31 H 1.08994 * 109.47110 * 119.99887 * 2 1 3 32 32 H 1.08004 * 119.84878 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.04766 * 180.30326 * 5 4 3 34 34 H 1.08995 * 109.59125 * 353.38025 * 10 9 7 35 35 H 1.09000 * 109.58634 * 113.80672 * 10 9 7 36 36 H 1.09000 * 109.49411 * 65.31740 * 11 10 9 37 37 H 1.08995 * 109.50305 * 185.41638 * 11 10 9 38 38 H 1.08999 * 109.45715 * 301.33911 * 12 11 10 39 39 H 1.09005 * 109.46565 * 184.93152 * 13 12 11 40 40 H 1.09001 * 109.47192 * 304.92663 * 13 12 11 41 41 H 0.96996 * 119.99474 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.50059 * 178.68605 * 22 12 11 43 43 H 1.09001 * 109.52579 * 58.59820 * 22 12 11 44 44 H 1.08997 * 109.58188 * 246.19724 * 23 9 7 45 45 H 1.08998 * 109.58401 * 6.47529 * 23 9 7 46 46 H 0.96696 * 113.99939 * 90.00514 * 25 24 6 47 47 H 1.07998 * 119.95876 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0699 -1.2023 5 6 2.7162 3.3708 -1.2143 6 6 2.9573 4.0355 -0.0093 7 6 3.4492 5.4264 -0.0148 8 8 2.9215 6.2607 0.6951 9 7 4.4834 5.7725 -0.8067 10 6 5.2016 4.7556 -1.5869 11 6 6.6978 4.8608 -1.2754 12 6 7.1678 6.2951 -1.5284 13 6 8.6692 6.3958 -1.2513 14 6 9.4213 5.5472 -2.2439 15 1 8.8824 4.9912 -2.9968 16 6 10.7975 5.4805 -2.1908 17 7 11.4537 6.1571 -1.2736 18 14 11.7296 4.4281 -3.4207 19 1 11.4465 4.9075 -4.7974 20 1 13.1868 4.5259 -3.1518 21 1 11.2966 3.0135 -3.2903 22 6 6.4132 7.2518 -0.6026 23 6 4.9138 7.1737 -0.9065 24 6 2.7239 3.3754 1.2046 25 8 2.9500 4.0121 2.3809 26 6 2.2610 2.0678 1.1979 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0804 1.5554 -2.1343 33 1 2.8895 3.8745 -2.1538 34 1 4.8406 3.7638 -1.3148 35 1 5.0370 4.9275 -2.6506 36 1 6.8712 4.6000 -0.2313 37 1 7.2523 4.1775 -1.9184 38 1 6.9715 6.5638 -2.5663 39 1 8.9873 7.4341 -1.3463 40 1 8.8767 6.0433 -0.2409 41 1 12.4218 6.1105 -1.2366 42 1 6.7651 8.2703 -0.7668 43 1 6.5891 6.9690 0.4353 44 1 4.7256 7.5428 -1.9147 45 1 4.3609 7.7779 -0.1872 46 1 2.1828 4.4917 2.7223 47 1 2.0801 1.5550 2.1309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584055212.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:52 Heat of formation + Delta-G solvation = -76.628101 kcal Electronic energy + Delta-G solvation = -26725.291121 eV Core-core repulsion = 23065.048557 eV Total energy + Delta-G solvation = -3660.242564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.76059 -39.16515 -37.42765 -36.97519 -34.42081 -33.77020 -32.12867 -31.00367 -30.25572 -29.58530 -27.95991 -25.29469 -24.18289 -23.22357 -22.53897 -22.20259 -21.25833 -20.06713 -18.97563 -17.93932 -17.31326 -16.49329 -16.28002 -15.83604 -15.67805 -14.90122 -14.71372 -14.52974 -14.26857 -14.07634 -13.95359 -13.59139 -13.52941 -13.15031 -12.99069 -12.77649 -12.72762 -12.32507 -12.04441 -11.81044 -11.78923 -11.65575 -11.29913 -11.17239 -10.98738 -10.85034 -10.71697 -10.67807 -10.45514 -10.12395 -9.79542 -9.61861 -9.27997 -9.03252 -8.95468 -8.79919 -8.35928 -8.31898 -5.99152 -4.01316 0.72264 1.03483 2.73401 3.08288 3.32104 3.37317 3.38648 3.46285 3.99725 4.35510 4.45394 4.50309 4.56032 4.82177 4.93511 5.00284 5.12763 5.16253 5.20855 5.35585 5.38109 5.46202 5.49390 5.51981 5.54528 5.59985 5.69723 5.71078 5.78645 5.83871 5.98423 5.99370 6.07164 6.08516 6.25064 6.39236 6.40831 6.50140 6.54641 6.71185 6.97227 7.01458 7.12234 7.52460 7.55253 7.67408 7.82802 8.00624 8.24909 8.42677 9.04926 9.62265 11.12140 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003176 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.802413 B = 8813.617955 C = 9957.077267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.049 4.049 4 C -0.134 4.134 5 C -0.068 4.068 6 C -0.156 4.156 7 C 0.567 3.433 8 O -0.546 6.546 9 N -0.597 5.597 10 C 0.098 3.902 11 C -0.119 4.119 12 C -0.080 4.080 13 C 0.028 3.972 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.129 4.129 23 C 0.113 3.887 24 C 0.161 3.839 25 O -0.489 6.489 26 C -0.151 4.151 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.398 0.602 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.604 -9.690 1.317 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.049 4.049 4 C -0.152 4.152 5 C -0.087 4.087 6 C -0.160 4.160 7 C 0.355 3.645 8 O -0.425 6.425 9 N -0.329 5.329 10 C -0.024 4.024 11 C -0.157 4.157 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.167 4.167 23 C -0.009 4.009 24 C 0.115 3.885 25 O -0.300 6.300 26 C -0.170 4.170 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.256 0.744 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.124 -9.417 1.702 24.105 hybrid contribution 0.389 -0.354 -0.615 0.809 sum -21.736 -9.771 1.087 23.856 Atomic orbital electron populations 1.21751 0.94424 1.01900 1.02361 1.20614 0.96349 0.92193 1.03410 1.19916 0.96305 0.96136 0.92530 1.20967 1.01636 0.94708 0.97891 1.21244 0.96209 0.94364 0.96849 1.20337 1.06342 0.95201 0.94126 1.18059 0.79950 0.87220 0.79290 1.90726 1.58731 1.51755 1.41255 1.48061 1.31043 1.09288 1.44522 1.22138 0.94109 0.91161 0.95005 1.21899 0.92097 0.99332 1.02332 1.21192 0.98525 0.92504 0.97658 1.19121 0.87738 0.97084 0.96979 1.21196 0.91335 1.27977 1.14992 0.92665 1.25025 0.97936 0.95826 0.95692 1.69956 1.07725 1.41816 1.33967 0.86705 0.78837 0.80961 0.81754 1.20302 1.21372 1.20278 1.22022 0.92959 1.00843 1.00926 1.21696 0.96417 0.81135 1.01657 1.18371 0.94797 0.90801 0.84544 1.84708 1.41090 1.69257 1.34933 1.21238 1.02373 0.94667 0.98684 0.92498 0.92391 0.92206 0.90493 0.90672 0.85199 0.84860 0.90003 0.91491 0.92262 0.89674 0.92350 0.96581 0.96635 0.92988 0.91073 0.91997 0.91698 0.89596 0.74429 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.09 -0.57 6.05 -27.89 -0.17 -0.74 16 3 C -0.05 -0.43 5.14 -104.58 -0.54 -0.97 16 4 C -0.13 -1.21 9.67 -39.63 -0.38 -1.59 16 5 C -0.07 -0.74 7.50 -39.20 -0.29 -1.03 16 6 C -0.16 -2.11 4.88 -104.85 -0.51 -2.62 16 7 C 0.57 9.14 6.97 -12.47 -0.09 9.05 16 8 O -0.55 -10.10 15.88 -5.51 -0.09 -10.19 16 9 N -0.60 -9.28 2.97 -174.00 -0.52 -9.80 16 10 C 0.10 1.42 5.21 -3.71 -0.02 1.40 16 11 C -0.12 -2.13 5.19 -26.61 -0.14 -2.27 16 12 C -0.08 -1.58 2.10 -90.58 -0.19 -1.77 16 13 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 14 C -0.52 -14.10 8.39 -34.44 -0.29 -14.39 16 15 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 18 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.13 -2.26 5.36 -26.61 -0.14 -2.40 16 23 C 0.11 1.75 6.44 -3.71 -0.02 1.72 16 24 C 0.16 2.06 6.69 -38.69 -0.26 1.80 16 25 O -0.49 -6.45 12.50 -29.45 -0.37 -6.82 16 26 C -0.15 -1.55 9.62 -39.47 -0.38 -1.92 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.13 1.27 7.25 -52.49 -0.38 0.89 16 34 H 0.08 1.08 5.06 -51.93 -0.26 0.82 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.60 6.91 -51.93 -0.36 1.24 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 1.36 6.99 -51.93 -0.36 1.00 16 46 H 0.40 3.75 9.06 45.56 0.41 4.16 16 47 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -33.11 376.99 -9.65 -42.76 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.79 Total: 2.25 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -3.28 Total: -14.14 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.22 Total: -35.88 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.46 Total: -17.01 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.11 -9.65 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584055212.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.868 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds