Wall clock time and date at job start Tue Mar 31 2020 12:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47198 * 2 1 4 4 C 1.38556 * 119.80426 * 269.97635 * 3 2 1 5 5 C 1.37789 * 120.30152 * 179.72258 * 4 3 2 6 6 C 1.39705 * 119.90308 * 0.57348 * 5 4 3 7 7 C 1.47537 * 120.18751 * 179.72263 * 6 5 4 8 8 O 1.21594 * 119.99722 * 132.28597 * 7 6 5 9 9 N 1.34773 * 120.00558 * 312.28815 * 7 6 5 10 10 C 1.46923 * 120.62568 * 354.97891 * 9 7 6 11 11 C 1.53188 * 108.77880 * 233.58756 * 10 9 7 12 12 C 1.53045 * 109.31287 * 305.37030 * 11 10 9 13 13 C 1.53005 * 109.45826 * 181.38316 * 12 11 10 14 14 C 1.50702 * 109.47249 * 64.93230 * 13 12 11 15 15 H 1.08001 * 120.00052 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99817 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00002 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 119.99683 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47570 * 60.00162 * 18 16 14 20 20 H 1.48509 * 109.47041 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47418 * 299.99830 * 18 16 14 22 22 C 1.53033 * 109.53928 * 61.36260 * 12 11 10 23 23 C 1.46928 * 120.63433 * 174.96371 * 9 7 6 24 24 C 1.40136 * 119.62339 * 359.45199 * 6 5 4 25 25 O 1.35654 * 120.15333 * 180.22868 * 24 6 5 26 26 C 1.38051 * 119.80805 * 89.99704 * 3 2 1 27 27 H 1.09003 * 109.46924 * 300.00376 * 1 2 3 28 28 H 1.09002 * 109.47187 * 59.99815 * 1 2 3 29 29 H 1.08999 * 109.47434 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46924 * 239.99624 * 2 1 3 31 31 H 1.08994 * 109.47110 * 119.99887 * 2 1 3 32 32 H 1.08004 * 119.84878 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.04766 * 180.30326 * 5 4 3 34 34 H 1.08995 * 109.59125 * 353.38025 * 10 9 7 35 35 H 1.09000 * 109.58634 * 113.80672 * 10 9 7 36 36 H 1.09000 * 109.49411 * 65.31740 * 11 10 9 37 37 H 1.08995 * 109.50305 * 185.41638 * 11 10 9 38 38 H 1.08999 * 109.45715 * 301.33911 * 12 11 10 39 39 H 1.09005 * 109.46565 * 184.93152 * 13 12 11 40 40 H 1.09001 * 109.47192 * 304.92663 * 13 12 11 41 41 H 0.96996 * 119.99474 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.50059 * 178.68605 * 22 12 11 43 43 H 1.09001 * 109.52579 * 58.59820 * 22 12 11 44 44 H 1.08997 * 109.58188 * 246.19724 * 23 9 7 45 45 H 1.08998 * 109.58401 * 6.47529 * 23 9 7 46 46 H 0.96696 * 113.99939 * 90.00514 * 25 24 6 47 47 H 1.07998 * 119.95876 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0699 -1.2023 5 6 2.7162 3.3708 -1.2143 6 6 2.9573 4.0355 -0.0093 7 6 3.4492 5.4264 -0.0148 8 8 2.9215 6.2607 0.6951 9 7 4.4834 5.7725 -0.8067 10 6 5.2016 4.7556 -1.5869 11 6 6.6978 4.8608 -1.2754 12 6 7.1678 6.2951 -1.5284 13 6 8.6692 6.3958 -1.2513 14 6 9.4213 5.5472 -2.2439 15 1 8.8824 4.9912 -2.9968 16 6 10.7975 5.4805 -2.1908 17 7 11.4537 6.1571 -1.2736 18 14 11.7296 4.4281 -3.4207 19 1 11.4465 4.9075 -4.7974 20 1 13.1868 4.5259 -3.1518 21 1 11.2966 3.0135 -3.2903 22 6 6.4132 7.2518 -0.6026 23 6 4.9138 7.1737 -0.9065 24 6 2.7239 3.3754 1.2046 25 8 2.9500 4.0121 2.3809 26 6 2.2610 2.0678 1.1979 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0804 1.5554 -2.1343 33 1 2.8895 3.8745 -2.1538 34 1 4.8406 3.7638 -1.3148 35 1 5.0370 4.9275 -2.6506 36 1 6.8712 4.6000 -0.2313 37 1 7.2523 4.1775 -1.9184 38 1 6.9715 6.5638 -2.5663 39 1 8.9873 7.4341 -1.3463 40 1 8.8767 6.0433 -0.2409 41 1 12.4218 6.1105 -1.2366 42 1 6.7651 8.2703 -0.7668 43 1 6.5891 6.9690 0.4353 44 1 4.7256 7.5428 -1.9147 45 1 4.3609 7.7779 -0.1872 46 1 2.1828 4.4917 2.7223 47 1 2.0801 1.5550 2.1309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584055212.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:51 Heat of formation + Delta-G solvation = -96.166254 kcal Electronic energy + Delta-G solvation = -26726.138358 eV Core-core repulsion = 23065.048557 eV Total energy + Delta-G solvation = -3661.089802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80041 -40.22910 -38.65710 -38.00858 -35.77470 -34.91214 -33.89171 -32.23702 -31.10896 -30.52818 -29.64165 -26.65332 -25.34657 -24.39483 -23.59951 -23.49795 -22.24503 -21.42284 -20.31291 -18.83306 -18.49363 -18.36432 -17.47394 -16.93368 -16.58506 -16.45311 -15.95971 -15.71364 -15.32404 -15.10363 -14.92314 -14.73903 -14.50911 -14.45876 -14.21645 -14.17530 -13.86873 -13.52273 -13.39875 -13.00489 -12.86920 -12.70601 -12.52683 -12.49450 -12.33171 -12.29830 -12.15393 -11.79817 -11.75778 -11.65298 -11.37954 -11.14997 -10.87382 -10.84262 -10.51715 -9.85354 -9.71681 -9.54551 -8.15829 -6.25955 -0.13118 0.25518 1.41998 1.44880 1.52250 1.59052 1.98291 2.43444 2.59059 3.17747 3.18041 3.39197 3.80600 3.82946 3.90581 4.00707 4.08366 4.15553 4.26295 4.28902 4.36581 4.43674 4.51018 4.54524 4.58925 4.63071 4.77324 4.82490 4.86103 4.90387 4.95479 5.05644 5.10773 5.13296 5.23301 5.25469 5.29505 5.32279 5.37325 5.42924 5.52040 5.56827 5.57416 5.79046 5.80167 5.88615 6.27870 6.34780 6.69940 6.90694 7.03765 7.42915 8.96233 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003176 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.802413 B = 8813.617955 C = 9957.077267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.042 4.042 4 C -0.129 4.129 5 C -0.068 4.068 6 C -0.184 4.184 7 C 0.562 3.438 8 O -0.579 6.579 9 N -0.601 5.601 10 C 0.109 3.891 11 C -0.113 4.113 12 C -0.071 4.071 13 C 0.032 3.968 14 C -0.527 4.527 15 H 0.070 0.930 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.963 3.037 19 H -0.264 1.264 20 H -0.290 1.290 21 H -0.265 1.265 22 C -0.122 4.122 23 C 0.119 3.881 24 C 0.140 3.860 25 O -0.510 6.510 26 C -0.154 4.154 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.034 0.966 37 H 0.079 0.921 38 H 0.070 0.930 39 H -0.013 1.013 40 H -0.021 1.021 41 H 0.261 0.739 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.408 0.592 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.343 -12.263 -1.198 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.042 4.042 4 C -0.146 4.146 5 C -0.086 4.086 6 C -0.188 4.188 7 C 0.352 3.648 8 O -0.461 6.461 9 N -0.332 5.332 10 C -0.013 4.013 11 C -0.152 4.152 12 C -0.090 4.090 13 C -0.005 4.005 14 C -0.565 4.565 15 H 0.088 0.912 16 C -0.203 4.203 17 N -0.580 5.580 18 Si 0.787 3.213 19 H -0.189 1.189 20 H -0.216 1.216 21 H -0.189 1.189 22 C -0.161 4.161 23 C -0.003 4.003 24 C 0.094 3.906 25 O -0.323 6.323 26 C -0.173 4.173 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.179 0.821 33 H 0.166 0.834 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.006 0.994 40 H -0.003 1.003 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.267 0.733 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.886 -12.003 -0.827 26.744 hybrid contribution 0.913 0.431 0.236 1.036 sum -22.973 -11.572 -0.591 25.730 Atomic orbital electron populations 1.21744 0.93723 1.02711 1.02128 1.20692 0.96804 0.90470 1.04469 1.20298 0.94661 0.97234 0.92011 1.21334 1.00149 0.93976 0.99181 1.21437 0.95867 0.95034 0.96275 1.20291 1.08724 0.94165 0.95611 1.18548 0.79637 0.88180 0.78385 1.90692 1.59873 1.53029 1.42474 1.48149 1.31046 1.09357 1.44647 1.22131 0.90919 0.91857 0.96376 1.21786 0.95038 0.97663 1.00669 1.21035 0.94819 0.94467 0.98654 1.19019 0.91809 0.94864 0.94777 1.21641 0.91839 1.27791 1.15216 0.91204 1.26015 0.99263 0.97249 0.97727 1.70120 1.07962 1.43764 1.36171 0.85536 0.76922 0.79436 0.79385 1.18899 1.21583 1.18943 1.21913 0.94679 1.00469 0.99014 1.21623 0.94142 0.81623 1.02926 1.18670 0.95936 0.91852 0.84153 1.84664 1.42336 1.69723 1.35537 1.21414 1.02077 0.93717 1.00070 0.93075 0.92332 0.90915 0.89003 0.90133 0.82109 0.83406 0.88361 0.88567 0.94741 0.90241 0.91136 0.99444 1.00259 0.93069 0.90632 0.94319 0.89103 0.90149 0.73270 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 71.98 0.71 -0.48 16 2 C -0.09 -0.82 6.05 29.85 0.18 -0.64 16 3 C -0.04 -0.63 5.14 -19.83 -0.10 -0.73 16 4 C -0.13 -1.87 9.67 22.24 0.22 -1.65 16 5 C -0.07 -1.28 7.50 22.52 0.17 -1.11 16 6 C -0.18 -4.81 4.88 -20.01 -0.10 -4.91 16 7 C 0.56 18.03 6.97 86.70 0.60 18.63 16 8 O -0.58 -21.87 15.88 6.30 0.10 -21.77 16 9 N -0.60 -18.09 2.97 -822.68 -2.45 -20.53 16 10 C 0.11 2.92 5.21 86.36 0.45 3.37 16 11 C -0.11 -4.04 5.19 30.67 0.16 -3.88 16 12 C -0.07 -2.82 2.10 -10.77 -0.02 -2.84 16 13 C 0.03 1.70 4.45 29.85 0.13 1.83 16 14 C -0.53 -28.98 8.39 25.60 0.21 -28.76 16 15 H 0.07 3.56 7.06 -2.91 -0.02 3.54 16 16 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 17 N -0.94 -57.87 13.29 21.45 0.28 -57.58 16 18 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 C -0.12 -4.37 5.36 30.67 0.16 -4.21 16 23 C 0.12 3.59 6.44 86.36 0.56 4.15 16 24 C 0.14 3.52 6.69 22.84 0.15 3.68 16 25 O -0.51 -13.91 12.50 -79.38 -0.99 -14.90 16 26 C -0.15 -2.93 9.62 22.34 0.21 -2.72 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.64 8.08 -2.39 -0.02 0.62 16 31 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 32 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 33 H 0.15 2.30 7.25 -2.91 -0.02 2.28 16 34 H 0.10 2.36 5.06 -2.39 -0.01 2.35 16 35 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 2.91 6.91 -2.39 -0.02 2.90 16 38 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 39 H -0.01 -0.74 8.14 -2.38 -0.02 -0.75 16 40 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.08 2.56 6.99 -2.39 -0.02 2.54 16 46 H 0.41 8.22 9.06 -74.06 -0.67 7.55 16 47 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -74.26 376.99 3.43 -70.83 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.29 Total: 18.44 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 4.17 Total: -20.14 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.16 Total: -78.12 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.89 Total: -36.67 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -74.26 3.43 -70.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584055212.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.336 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds