Wall clock time and date at job start Tue Mar 31 2020 11:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47000 * 2 1 4 4 C 1.38233 * 120.00084 * 90.00132 * 3 2 1 5 5 C 1.38236 * 120.00071 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00081 * 359.95801 * 5 4 3 7 7 C 1.50701 * 119.99921 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47068 * 90.00011 * 7 6 5 9 9 C 1.50700 * 109.46723 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00254 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99819 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.64744 * 359.96801 * 11 9 8 13 13 C 1.54326 * 107.27002 * 181.08547 * 12 11 9 14 14 C 1.55151 * 102.94313 * 22.19392 * 13 12 11 15 15 O 1.42901 * 111.00842 * 82.56580 * 14 13 12 16 16 C 1.50698 * 111.00641 * 206.42337 * 14 13 12 17 17 H 1.07993 * 120.00138 * 112.19363 * 16 14 13 18 18 C 1.37875 * 119.99529 * 292.19405 * 16 14 13 19 19 N 1.31514 * 120.00358 * 359.97438 * 18 16 14 20 20 Si 1.86808 * 119.99716 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47193 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47196 * 119.99989 * 20 18 16 23 23 H 1.48495 * 109.46989 * 240.00003 * 20 18 16 24 24 C 1.47421 * 125.64805 * 179.97438 * 11 9 8 25 25 C 1.38241 * 119.99970 * 0.27213 * 6 5 4 26 26 C 1.38235 * 119.99924 * 359.51675 * 25 6 5 27 27 H 1.08994 * 109.47294 * 299.99596 * 1 2 3 28 28 H 1.09003 * 109.47602 * 60.00111 * 1 2 3 29 29 H 1.09005 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47171 * 240.00106 * 2 1 3 31 31 H 1.08997 * 109.47240 * 120.00479 * 2 1 3 32 32 H 1.08002 * 119.99975 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.99695 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.47155 * 329.99875 * 7 6 5 35 35 H 1.09003 * 109.46723 * 209.99899 * 7 6 5 36 36 H 1.08995 * 109.47243 * 59.99918 * 8 7 6 37 37 H 1.08996 * 109.46877 * 299.99595 * 8 7 6 38 38 H 1.08996 * 109.88310 * 300.50411 * 12 11 9 39 39 H 1.09002 * 109.88672 * 61.51452 * 12 11 9 40 40 H 1.09000 * 110.72348 * 263.82382 * 13 12 11 41 41 H 1.09003 * 110.71705 * 140.55404 * 13 12 11 42 42 H 0.96708 * 113.99322 * 67.80350 * 15 14 13 43 43 H 0.96999 * 120.00046 * 179.97438 * 19 18 16 44 44 H 1.09002 * 110.36865 * 37.00989 * 24 11 9 45 45 H 1.09001 * 110.37117 * 274.68307 * 24 11 9 46 46 H 1.07999 * 119.99937 * 179.73254 * 25 6 5 47 47 H 1.07992 * 120.00018 * 180.25042 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7239 3.3756 1.1971 6 6 2.9556 4.0268 0.0000 7 6 3.4590 5.4472 0.0000 8 6 4.9890 5.4461 0.0011 9 6 5.4924 6.8665 0.0005 10 8 4.7049 7.7890 -0.0002 11 7 6.8176 7.1119 0.0017 12 6 7.8776 6.0931 0.0044 13 6 9.2289 6.8379 0.0329 14 6 8.8491 8.2247 0.6158 15 8 8.7826 8.1799 2.0426 16 6 9.8138 9.2869 0.1553 17 1 9.4809 10.0638 -0.5170 18 6 11.1213 9.2667 0.5921 19 7 11.5265 8.3208 1.4111 20 14 12.3174 10.5830 0.0207 21 1 11.6185 11.5253 -0.8898 22 1 12.8358 11.3254 1.1977 23 1 13.4484 9.9449 -0.6996 24 6 7.4444 8.4462 0.0008 25 6 2.7207 3.3767 -1.1972 26 6 2.2636 2.0722 -1.1972 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0823 1.5635 2.1325 33 1 2.9035 3.8848 2.1325 34 1 3.0955 5.9615 0.8896 35 1 3.0966 5.9611 -0.8903 36 1 5.3526 4.9318 -0.8885 37 1 5.3513 4.9322 0.8914 38 1 7.7833 5.4623 0.8883 39 1 7.8072 5.4824 -0.8958 40 1 9.6341 6.9405 -0.9738 41 1 9.9374 6.3266 0.6847 42 1 9.6382 8.0429 2.4720 43 1 12.4465 8.3065 1.7182 44 1 6.8664 9.1373 0.6144 45 1 7.5314 8.8238 -1.0180 46 1 2.8976 3.8870 -2.1325 47 1 2.0839 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592835431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:59 Heat of formation + Delta-G solvation = -84.697862 kcal Electronic energy + Delta-G solvation = -25835.481213 eV Core-core repulsion = 22174.888718 eV Total energy + Delta-G solvation = -3660.592495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.87007 -39.30261 -37.31239 -35.22161 -34.30081 -32.55009 -32.16137 -31.04587 -30.02996 -28.94638 -28.13787 -25.67681 -24.45135 -22.85556 -22.80127 -21.95554 -20.53689 -19.70341 -18.63727 -17.29640 -16.82795 -16.07458 -16.00731 -15.32776 -15.20484 -15.00472 -14.95606 -14.22612 -14.11426 -13.89896 -13.79511 -13.47222 -13.30822 -13.09852 -12.82537 -12.59610 -12.14110 -12.06378 -11.86240 -11.74781 -11.57301 -11.53323 -11.34889 -11.33983 -11.10932 -10.93018 -10.91109 -10.82488 -10.61063 -10.48195 -10.06422 -9.47019 -9.35670 -9.03756 -8.71313 -8.59680 -8.23043 -7.97842 -6.32602 -4.40169 1.19601 1.28781 3.10129 3.16673 3.25935 3.30249 3.50051 3.70042 4.24159 4.50155 4.59467 4.72383 4.86801 4.88681 4.94458 5.05792 5.11520 5.17124 5.24470 5.26092 5.38738 5.39746 5.53829 5.58574 5.64719 5.67144 5.73138 5.82619 5.84159 5.88023 5.94576 6.01024 6.03731 6.20344 6.28140 6.31723 6.43383 6.46754 6.58332 6.65204 6.86839 6.89783 6.96474 7.27859 7.30509 7.71225 7.96957 8.15700 8.61413 8.67084 9.28987 9.45620 10.75163 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.002179 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.877222 B =12848.187911 C =13109.622623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.081 4.081 7 C -0.065 4.065 8 C -0.128 4.128 9 C 0.521 3.479 10 O -0.558 6.558 11 N -0.607 5.607 12 C 0.100 3.900 13 C -0.140 4.140 14 C 0.248 3.752 15 O -0.584 6.584 16 C -0.534 4.534 17 H 0.066 0.934 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.904 3.096 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.119 3.881 25 C -0.113 4.113 26 C -0.117 4.117 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.385 0.615 43 H 0.269 0.731 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.122 0.878 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.819 -16.085 -3.129 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.134 4.134 5 C -0.131 4.131 6 C -0.081 4.081 7 C -0.103 4.103 8 C -0.168 4.168 9 C 0.310 3.690 10 O -0.437 6.437 11 N -0.340 5.340 12 C -0.023 4.023 13 C -0.178 4.178 14 C 0.207 3.793 15 O -0.395 6.395 16 C -0.573 4.573 17 H 0.084 0.916 18 C -0.131 4.131 19 N -0.538 5.538 20 Si 0.731 3.269 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.003 4.003 25 C -0.132 4.132 26 C -0.135 4.135 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.237 0.763 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.140 0.860 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.783 -15.585 -3.152 22.403 hybrid contribution 1.528 0.428 -0.175 1.596 sum -14.255 -15.157 -3.327 21.072 Atomic orbital electron populations 1.21748 0.94830 1.01565 1.02242 1.20528 0.96103 0.92823 1.02726 1.19869 0.99760 0.96204 0.93292 1.20998 1.00112 0.94893 0.97429 1.21096 0.99399 0.94765 0.97814 1.19966 0.98750 0.96198 0.93173 1.20344 0.93607 0.91852 1.04458 1.21588 0.96217 0.94651 1.04323 1.20203 0.80996 0.91192 0.76624 1.90656 1.54664 1.46669 1.51729 1.48635 1.04686 1.09534 1.71108 1.22150 0.89241 0.91178 0.99683 1.23204 0.93273 0.99140 1.02209 1.19596 0.89054 0.91078 0.79544 1.86102 1.37426 1.95863 1.20075 1.21528 0.94510 1.12004 1.29220 0.91568 1.25000 0.98129 0.95704 0.94248 1.69568 1.18132 1.32797 1.33291 0.86342 0.80452 0.81399 0.78674 1.19549 1.20744 1.20810 1.22380 0.94424 0.83379 1.00106 1.21074 0.99593 0.94752 0.97732 1.20987 1.00222 0.94878 0.97402 0.92562 0.92587 0.92514 0.91164 0.91142 0.86295 0.85952 0.90186 0.90256 0.89251 0.89095 0.92394 0.92879 0.91361 0.89877 0.76252 0.92115 0.91136 0.91182 0.86033 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.15 0.37 -0.56 16 2 C -0.08 -0.59 6.06 -27.89 -0.17 -0.76 16 3 C -0.09 -0.84 5.13 -104.62 -0.54 -1.38 16 4 C -0.12 -1.12 9.70 -39.58 -0.38 -1.51 16 5 C -0.11 -1.21 9.70 -39.58 -0.38 -1.59 16 6 C -0.08 -0.92 5.13 -104.62 -0.54 -1.45 16 7 C -0.06 -0.82 4.63 -27.88 -0.13 -0.95 16 8 C -0.13 -1.75 4.87 -27.88 -0.14 -1.89 16 9 C 0.52 9.71 7.85 -10.99 -0.09 9.63 16 10 O -0.56 -12.12 16.24 5.56 0.09 -12.03 16 11 N -0.61 -12.00 3.33 -170.51 -0.57 -12.57 16 12 C 0.10 1.79 6.49 -3.06 -0.02 1.77 16 13 C -0.14 -2.95 5.64 -24.90 -0.14 -3.09 16 14 C 0.25 5.96 0.89 -89.61 -0.08 5.88 16 15 O -0.58 -14.99 13.18 -35.23 -0.46 -15.46 16 16 C -0.53 -13.80 8.25 -34.44 -0.28 -14.08 16 17 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 19 N -0.90 -22.91 10.79 55.43 0.60 -22.31 16 20 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.12 2.67 6.08 -2.52 -0.02 2.65 16 25 C -0.11 -1.18 9.70 -39.58 -0.38 -1.57 16 26 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 34 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 35 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 41 H 0.08 1.83 7.85 -51.93 -0.41 1.43 16 42 H 0.39 9.95 6.93 45.56 0.32 10.27 16 43 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 44 H 0.07 1.69 8.04 -51.93 -0.42 1.28 16 45 H 0.07 1.52 8.01 -51.93 -0.42 1.11 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -28.80 385.84 -10.16 -38.96 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.21 Total: 11.28 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -3.40 Total: -8.68 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.03 Total: -34.88 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.37 Total: -27.49 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.80 -10.16 -38.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592835431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.740 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds