Wall clock time and date at job start Tue Mar 31 2020 11:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47000 * 2 1 4 4 C 1.38233 * 120.00084 * 90.00132 * 3 2 1 5 5 C 1.38236 * 120.00071 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00081 * 359.95801 * 5 4 3 7 7 C 1.50701 * 119.99921 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47068 * 90.00011 * 7 6 5 9 9 C 1.50700 * 109.46723 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00254 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99819 * 179.97438 * 9 8 7 12 12 C 1.47021 * 125.64744 * 359.96801 * 11 9 8 13 13 C 1.54326 * 107.27002 * 181.08547 * 12 11 9 14 14 C 1.55151 * 102.94313 * 22.19392 * 13 12 11 15 15 O 1.42901 * 111.00842 * 82.56580 * 14 13 12 16 16 C 1.50698 * 111.00641 * 206.42337 * 14 13 12 17 17 H 1.07993 * 120.00138 * 112.19363 * 16 14 13 18 18 C 1.37875 * 119.99529 * 292.19405 * 16 14 13 19 19 N 1.31514 * 120.00358 * 359.97438 * 18 16 14 20 20 Si 1.86808 * 119.99716 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47193 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47196 * 119.99989 * 20 18 16 23 23 H 1.48495 * 109.46989 * 240.00003 * 20 18 16 24 24 C 1.47421 * 125.64805 * 179.97438 * 11 9 8 25 25 C 1.38241 * 119.99970 * 0.27213 * 6 5 4 26 26 C 1.38235 * 119.99924 * 359.51675 * 25 6 5 27 27 H 1.08994 * 109.47294 * 299.99596 * 1 2 3 28 28 H 1.09003 * 109.47602 * 60.00111 * 1 2 3 29 29 H 1.09005 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47171 * 240.00106 * 2 1 3 31 31 H 1.08997 * 109.47240 * 120.00479 * 2 1 3 32 32 H 1.08002 * 119.99975 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.99695 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.47155 * 329.99875 * 7 6 5 35 35 H 1.09003 * 109.46723 * 209.99899 * 7 6 5 36 36 H 1.08995 * 109.47243 * 59.99918 * 8 7 6 37 37 H 1.08996 * 109.46877 * 299.99595 * 8 7 6 38 38 H 1.08996 * 109.88310 * 300.50411 * 12 11 9 39 39 H 1.09002 * 109.88672 * 61.51452 * 12 11 9 40 40 H 1.09000 * 110.72348 * 263.82382 * 13 12 11 41 41 H 1.09003 * 110.71705 * 140.55404 * 13 12 11 42 42 H 0.96708 * 113.99322 * 67.80350 * 15 14 13 43 43 H 0.96999 * 120.00046 * 179.97438 * 19 18 16 44 44 H 1.09002 * 110.36865 * 37.00989 * 24 11 9 45 45 H 1.09001 * 110.37117 * 274.68307 * 24 11 9 46 46 H 1.07999 * 119.99937 * 179.73254 * 25 6 5 47 47 H 1.07992 * 120.00018 * 180.25042 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7239 3.3756 1.1971 6 6 2.9556 4.0268 0.0000 7 6 3.4590 5.4472 0.0000 8 6 4.9890 5.4461 0.0011 9 6 5.4924 6.8665 0.0005 10 8 4.7049 7.7890 -0.0002 11 7 6.8176 7.1119 0.0017 12 6 7.8776 6.0931 0.0044 13 6 9.2289 6.8379 0.0329 14 6 8.8491 8.2247 0.6158 15 8 8.7826 8.1799 2.0426 16 6 9.8138 9.2869 0.1553 17 1 9.4809 10.0638 -0.5170 18 6 11.1213 9.2667 0.5921 19 7 11.5265 8.3208 1.4111 20 14 12.3174 10.5830 0.0207 21 1 11.6185 11.5253 -0.8898 22 1 12.8358 11.3254 1.1977 23 1 13.4484 9.9449 -0.6996 24 6 7.4444 8.4462 0.0008 25 6 2.7207 3.3767 -1.1972 26 6 2.2636 2.0722 -1.1972 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0823 1.5635 2.1325 33 1 2.9035 3.8848 2.1325 34 1 3.0955 5.9615 0.8896 35 1 3.0966 5.9611 -0.8903 36 1 5.3526 4.9318 -0.8885 37 1 5.3513 4.9322 0.8914 38 1 7.7833 5.4623 0.8883 39 1 7.8072 5.4824 -0.8958 40 1 9.6341 6.9405 -0.9738 41 1 9.9374 6.3266 0.6847 42 1 9.6382 8.0429 2.4720 43 1 12.4465 8.3065 1.7182 44 1 6.8664 9.1373 0.6144 45 1 7.5314 8.8238 -1.0180 46 1 2.8976 3.8870 -2.1325 47 1 2.0839 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592835431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:58 Heat of formation + Delta-G solvation = -100.064526 kcal Electronic energy + Delta-G solvation = -25836.147561 eV Core-core repulsion = 22174.888718 eV Total energy + Delta-G solvation = -3661.258844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.14376 -40.34933 -38.99077 -36.12961 -35.99919 -34.14687 -33.43722 -31.77532 -31.62375 -30.23089 -29.50359 -27.22888 -25.64237 -23.96556 -23.58838 -23.12286 -21.57739 -21.23443 -20.13601 -19.17511 -18.23536 -17.14913 -16.95440 -16.86397 -16.62682 -16.36887 -16.09342 -15.73359 -15.40763 -14.90760 -14.63665 -14.53566 -14.39555 -14.10303 -14.01602 -13.84875 -13.69137 -13.47011 -13.21630 -13.17242 -13.05106 -12.68294 -12.63668 -12.48464 -12.35325 -12.29186 -12.25812 -11.91503 -11.83666 -11.63599 -11.59102 -11.30947 -10.91902 -10.64304 -10.15528 -9.77962 -9.57339 -9.37482 -8.26309 -6.40699 0.43296 0.54566 1.40342 1.44886 1.54758 1.63482 2.08078 2.39539 2.86592 2.98617 3.50477 3.81158 3.89676 3.92415 4.01837 4.08208 4.11770 4.18783 4.22773 4.33658 4.39712 4.41856 4.54374 4.56763 4.60198 4.64482 4.67348 4.73292 4.76454 4.89231 4.94562 5.09492 5.10135 5.11791 5.17528 5.23467 5.27674 5.30744 5.41314 5.43924 5.52106 5.57019 5.76776 5.77137 5.78171 6.04756 6.16702 6.61124 6.66189 7.15781 7.30734 7.44567 8.80265 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.002179 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.877222 B =12848.187911 C =13109.622623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.094 4.094 7 C -0.057 4.057 8 C -0.114 4.114 9 C 0.516 3.484 10 O -0.595 6.595 11 N -0.612 5.612 12 C 0.107 3.893 13 C -0.131 4.131 14 C 0.233 3.767 15 O -0.596 6.596 16 C -0.561 4.561 17 H 0.056 0.944 18 C 0.035 3.965 19 N -0.910 5.910 20 Si 0.962 3.038 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.274 1.274 24 C 0.123 3.877 25 C -0.121 4.121 26 C -0.122 4.122 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.381 0.619 43 H 0.273 0.727 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.130 0.870 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.021 -18.409 -3.923 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.141 4.141 5 C -0.142 4.142 6 C -0.094 4.094 7 C -0.095 4.095 8 C -0.153 4.153 9 C 0.307 3.693 10 O -0.477 6.477 11 N -0.344 5.344 12 C -0.015 4.015 13 C -0.169 4.169 14 C 0.193 3.807 15 O -0.406 6.406 16 C -0.599 4.599 17 H 0.074 0.926 18 C -0.166 4.166 19 N -0.550 5.550 20 Si 0.788 3.212 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.200 1.200 24 C 0.000 4.000 25 C -0.139 4.139 26 C -0.140 4.140 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.152 0.848 33 H 0.143 0.857 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.233 0.767 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.148 0.852 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.988 -17.938 -3.949 24.351 hybrid contribution 1.549 1.150 0.098 1.932 sum -14.439 -16.788 -3.851 22.475 Atomic orbital electron populations 1.21735 0.94363 1.02338 1.01804 1.20580 0.96411 0.91500 1.03607 1.20197 0.98798 0.97246 0.93046 1.21233 0.99825 0.94608 0.98471 1.21233 0.99760 0.95400 0.97798 1.19840 1.00221 0.95379 0.93948 1.20209 0.92944 0.92887 1.03411 1.21593 0.96713 0.91026 1.06016 1.21128 0.80084 0.92918 0.75188 1.90636 1.55432 1.48410 1.53226 1.48736 1.05605 1.08668 1.71430 1.22195 0.86545 0.90487 1.02272 1.22996 0.94984 0.97584 1.01374 1.19796 0.89641 0.92555 0.78750 1.86088 1.37189 1.96044 1.21294 1.21743 0.95546 1.12756 1.29841 0.92559 1.25627 0.99275 0.97408 0.94304 1.69624 1.18548 1.33461 1.33330 0.85450 0.78567 0.79115 0.78111 1.19810 1.20674 1.19956 1.22138 0.93628 0.84745 0.99444 1.21241 0.99594 0.95293 0.97742 1.21252 0.99737 0.94621 0.98410 0.93084 0.92957 0.91171 0.90210 0.90381 0.84761 0.85701 0.91630 0.91017 0.86824 0.87713 0.90944 0.89075 0.91564 0.90999 0.76729 0.91778 0.93819 0.91022 0.85177 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 71.98 0.71 -0.80 16 2 C -0.08 -0.95 6.06 29.85 0.18 -0.77 16 3 C -0.09 -1.50 5.13 -19.86 -0.10 -1.60 16 4 C -0.12 -2.15 9.70 22.27 0.22 -1.94 16 5 C -0.12 -2.49 9.70 22.27 0.22 -2.27 16 6 C -0.09 -2.00 5.13 -19.86 -0.10 -2.10 16 7 C -0.06 -1.40 4.63 29.85 0.14 -1.26 16 8 C -0.11 -2.92 4.87 29.85 0.15 -2.77 16 9 C 0.52 18.90 7.85 87.66 0.69 19.59 16 10 O -0.60 -26.27 16.24 -3.04 -0.05 -26.32 16 11 N -0.61 -23.76 3.33 -811.75 -2.70 -26.46 16 12 C 0.11 3.59 6.49 86.73 0.56 4.15 16 13 C -0.13 -5.44 5.64 31.78 0.18 -5.26 16 14 C 0.23 11.34 0.89 -10.14 -0.01 11.33 16 15 O -0.60 -31.16 13.18 -148.98 -1.96 -33.13 16 16 C -0.56 -29.40 8.25 25.60 0.21 -29.19 16 17 H 0.06 2.97 7.77 -2.91 -0.02 2.95 16 18 C 0.03 1.77 5.30 84.65 0.45 2.21 16 19 N -0.91 -46.34 10.79 21.45 0.23 -46.11 16 20 Si 0.96 40.97 29.54 68.60 2.03 42.99 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 C 0.12 5.65 6.08 86.86 0.53 6.18 16 25 C -0.12 -2.30 9.70 22.27 0.22 -2.08 16 26 C -0.12 -2.04 9.70 22.27 0.22 -1.82 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 31 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 32 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 35 H 0.07 1.85 8.04 -2.39 -0.02 1.83 16 36 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.07 2.74 8.03 -2.39 -0.02 2.72 16 41 H 0.07 3.14 7.85 -2.39 -0.02 3.12 16 42 H 0.38 20.09 6.93 -74.05 -0.51 19.57 16 43 H 0.27 13.15 8.31 -92.71 -0.77 12.37 16 44 H 0.04 2.19 8.04 -2.39 -0.02 2.17 16 45 H 0.07 3.20 8.01 -2.39 -0.02 3.18 16 46 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 47 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -62.31 385.84 2.42 -59.89 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: 0.43 Total: 37.53 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 4.45 Total: -8.40 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -2.47 Total: -72.57 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -2.01 Total: -59.45 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -62.31 2.42 -59.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592835431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.175 kcal (2) G-P(sol) polarization free energy of solvation -62.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds