Wall clock time and date at job start Tue Mar 31 2020 11:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38241 * 119.99732 * 179.78980 * 4 3 2 6 6 C 1.38241 * 119.99662 * 0.45864 * 5 4 3 7 7 C 1.50699 * 119.99538 * 179.79434 * 6 5 4 8 8 C 1.53000 * 109.47216 * 269.97896 * 7 6 5 9 9 C 1.50699 * 109.47547 * 180.02562 * 8 7 6 10 10 O 1.21287 * 119.99444 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00300 * 180.02562 * 9 8 7 12 12 C 1.47424 * 125.64718 * 0.02576 * 11 9 8 13 13 C 1.54912 * 104.83151 * 204.09634 * 12 11 9 14 14 C 1.55163 * 101.57912 * 322.98769 * 13 12 11 15 15 O 1.42899 * 110.71588 * 276.96515 * 14 13 12 16 16 C 1.50689 * 110.71926 * 153.86826 * 14 13 12 17 17 H 1.08007 * 120.00032 * 241.45501 * 16 14 13 18 18 C 1.37876 * 120.00085 * 61.45389 * 16 14 13 19 19 N 1.31511 * 120.00217 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 120.00109 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47202 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47313 * 120.00174 * 20 18 16 23 23 H 1.48503 * 109.46866 * 240.00047 * 20 18 16 24 24 C 1.47013 * 125.64850 * 179.71856 * 11 9 8 25 25 C 1.38233 * 120.00035 * 359.77290 * 6 5 4 26 26 C 1.38230 * 120.00047 * 0.02562 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.99754 * 180.25571 * 5 4 3 34 34 H 1.09002 * 109.47387 * 29.97991 * 7 6 5 35 35 H 1.09002 * 109.46922 * 149.97859 * 7 6 5 36 36 H 1.09002 * 109.47020 * 300.00320 * 8 7 6 37 37 H 1.09002 * 109.47204 * 60.00136 * 8 7 6 38 38 H 1.09003 * 110.36616 * 322.92918 * 12 11 9 39 39 H 1.08998 * 110.37115 * 85.24989 * 12 11 9 40 40 H 1.08997 * 111.01017 * 81.05969 * 13 12 11 41 41 H 1.09000 * 111.00023 * 204.87942 * 13 12 11 42 42 H 0.96698 * 114.00000 * 298.54223 * 15 14 13 43 43 H 0.97003 * 120.00438 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.88414 * 298.39347 * 24 11 9 45 45 H 1.09007 * 109.88352 * 59.55906 * 24 11 9 46 46 H 1.08001 * 119.99633 * 179.97438 * 25 6 5 47 47 H 1.08008 * 119.99880 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7247 3.3754 -1.1971 6 6 2.9547 4.0272 0.0002 7 6 3.4569 5.4480 0.0001 8 6 4.9869 5.4481 0.0012 9 6 5.4892 6.8689 0.0018 10 8 4.7010 7.7907 0.0019 11 7 6.8143 7.1153 0.0022 12 6 7.8779 6.0945 0.0016 13 6 9.1105 6.8058 0.6138 14 6 8.9669 8.2359 0.0293 15 8 9.5129 8.3002 -1.2897 16 6 9.6288 9.2481 0.9282 17 1 9.0423 10.0346 1.3798 18 6 10.9832 9.1703 1.1742 19 7 11.6973 8.2123 0.6248 20 14 11.8037 10.4246 2.2891 21 1 10.7881 11.3915 2.7780 22 1 12.4227 9.7289 3.4458 23 1 12.8526 11.1511 1.5292 24 6 7.4383 8.4464 -0.0030 25 6 2.7235 3.3757 1.1972 26 6 2.2629 2.0724 1.1972 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0926 1.5599 -2.1324 33 1 2.9050 3.8844 -2.1324 34 1 3.0941 5.9616 -0.8902 35 1 3.0929 5.9620 0.8898 36 1 5.3496 4.9345 0.8915 37 1 5.3509 4.9341 -0.8885 38 1 7.5870 5.2431 0.6169 39 1 8.0933 5.7715 -1.0169 40 1 9.0524 6.8209 1.7021 41 1 10.0369 6.3381 0.2805 42 1 10.4577 8.0993 -1.3344 43 1 12.6503 8.1577 0.7976 44 1 7.1553 8.9849 -0.9075 45 1 7.1244 9.0065 0.8779 46 1 2.9035 3.8848 2.1326 47 1 2.0826 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592835434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:04 Heat of formation + Delta-G solvation = -84.414248 kcal Electronic energy + Delta-G solvation = -25820.670121 eV Core-core repulsion = 22160.089924 eV Total energy + Delta-G solvation = -3660.580197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.88833 -39.32572 -37.35686 -35.23606 -34.31753 -32.56573 -32.23605 -31.05653 -29.94336 -28.95337 -28.15623 -25.67712 -24.44789 -22.86664 -22.80237 -22.01900 -20.55886 -19.70293 -18.64055 -17.29628 -16.80055 -16.07921 -16.02148 -15.42312 -15.22901 -14.97359 -14.93886 -14.26366 -14.14690 -13.94610 -13.80354 -13.48236 -13.30621 -12.99566 -12.95577 -12.55788 -12.13017 -12.10379 -11.87636 -11.68974 -11.56864 -11.47417 -11.38175 -11.35537 -11.12134 -10.93842 -10.92117 -10.83855 -10.62907 -10.47086 -10.13140 -9.48567 -9.32216 -9.04816 -8.70070 -8.61034 -8.24073 -8.01308 -6.30787 -4.38093 1.18490 1.27724 3.07345 3.17544 3.26693 3.31440 3.47752 3.68016 4.25512 4.49187 4.58582 4.70691 4.85781 4.87637 4.96415 5.05069 5.09408 5.15435 5.22285 5.24758 5.37267 5.38587 5.52478 5.57944 5.63799 5.66356 5.73526 5.81320 5.83374 5.91477 5.93615 6.00546 6.02237 6.18280 6.22755 6.30319 6.44396 6.45825 6.56964 6.68780 6.88592 6.89541 6.95966 7.27729 7.33358 7.71344 8.00632 8.12106 8.62152 8.66096 9.28320 9.37324 10.76796 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029054 B = 0.002201 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.489582 B =12715.627086 C =12889.053633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.081 4.081 7 C -0.065 4.065 8 C -0.128 4.128 9 C 0.520 3.480 10 O -0.557 6.557 11 N -0.609 5.609 12 C 0.094 3.906 13 C -0.134 4.134 14 C 0.246 3.754 15 O -0.586 6.586 16 C -0.533 4.533 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.122 3.878 25 C -0.113 4.113 26 C -0.117 4.117 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.382 0.618 43 H 0.267 0.733 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.122 0.878 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.342 -16.282 -0.814 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.081 4.081 7 C -0.103 4.103 8 C -0.168 4.168 9 C 0.308 3.692 10 O -0.437 6.437 11 N -0.341 5.341 12 C -0.028 4.028 13 C -0.173 4.173 14 C 0.206 3.794 15 O -0.394 6.394 16 C -0.572 4.572 17 H 0.083 0.917 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.001 3.999 25 C -0.131 4.131 26 C -0.135 4.135 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.232 0.768 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.140 0.860 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.269 -15.717 -0.972 22.642 hybrid contribution 1.295 0.384 0.765 1.552 sum -14.975 -15.333 -0.207 21.433 Atomic orbital electron populations 1.21749 0.94826 1.01571 1.02242 1.20532 0.96109 0.92814 1.02733 1.19870 0.99729 0.96216 0.93292 1.20994 1.00158 0.94887 0.97419 1.21086 0.99524 0.94738 0.97766 1.19961 0.98798 0.96175 0.93175 1.20343 0.93577 0.91870 1.04473 1.21593 0.96248 0.94585 1.04355 1.20227 0.80939 0.91232 0.76753 1.90660 1.54643 1.46723 1.51654 1.48681 1.04767 1.09536 1.71162 1.22518 0.88893 0.90980 1.00437 1.23298 0.95318 0.98518 1.00179 1.19484 0.86911 0.91583 0.81446 1.86135 1.29482 1.93693 1.30132 1.21554 0.93745 1.13274 1.28603 0.91721 1.24989 0.97162 0.95472 0.95448 1.69701 1.07577 1.31937 1.44332 0.86364 0.79335 0.81182 0.80129 1.19574 1.20837 1.20754 1.22058 0.93739 0.82997 1.01151 1.21083 0.99495 0.94759 0.97773 1.20994 1.00140 0.94899 0.97424 0.92569 0.92508 0.92577 0.91146 0.91150 0.86310 0.85998 0.90222 0.90200 0.89119 0.89148 0.92121 0.91943 0.91467 0.89357 0.76791 0.92274 0.92170 0.91043 0.85986 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.08 -0.59 6.07 -27.88 -0.17 -0.75 16 3 C -0.09 -0.83 5.13 -104.62 -0.54 -1.37 16 4 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 5 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 6 C -0.08 -0.90 5.13 -104.62 -0.54 -1.44 16 7 C -0.06 -0.81 4.63 -27.88 -0.13 -0.94 16 8 C -0.13 -1.72 4.69 -27.88 -0.13 -1.85 16 9 C 0.52 9.54 7.85 -10.99 -0.09 9.45 16 10 O -0.56 -11.96 16.31 5.55 0.09 -11.87 16 11 N -0.61 -11.95 3.33 -170.51 -0.57 -12.52 16 12 C 0.09 1.68 6.68 -2.53 -0.02 1.66 16 13 C -0.13 -2.86 5.47 -24.58 -0.13 -2.99 16 14 C 0.25 5.89 0.85 -89.93 -0.08 5.81 16 15 O -0.59 -14.57 13.07 -35.23 -0.46 -15.03 16 16 C -0.53 -13.89 8.22 -34.45 -0.28 -14.18 16 17 H 0.06 1.70 7.58 -52.48 -0.40 1.31 16 18 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 19 N -0.90 -22.75 10.67 55.43 0.59 -22.16 16 20 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.12 2.77 6.23 -3.06 -0.02 2.75 16 25 C -0.11 -1.18 9.70 -39.59 -0.38 -1.56 16 26 C -0.12 -1.10 9.70 -39.59 -0.38 -1.49 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 34 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 36 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.90 7.48 -51.93 -0.39 0.51 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 41 H 0.09 1.94 7.54 -51.93 -0.39 1.55 16 42 H 0.38 9.46 7.46 45.56 0.34 9.80 16 43 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 44 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 45 H 0.07 1.65 7.66 -51.93 -0.40 1.25 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -28.67 384.34 -10.05 -38.72 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.09 Total: 10.67 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.38 Total: -8.75 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.02 Total: -34.68 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.37 Total: -26.90 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.67 -10.05 -38.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592835434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.694 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds