Wall clock time and date at job start Tue Mar 31 2020 11:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38241 * 119.99732 * 179.78980 * 4 3 2 6 6 C 1.38241 * 119.99662 * 0.45864 * 5 4 3 7 7 C 1.50699 * 119.99538 * 179.79434 * 6 5 4 8 8 C 1.53000 * 109.47216 * 269.97896 * 7 6 5 9 9 C 1.50699 * 109.47547 * 180.02562 * 8 7 6 10 10 O 1.21287 * 119.99444 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00300 * 180.02562 * 9 8 7 12 12 C 1.47424 * 125.64718 * 0.02576 * 11 9 8 13 13 C 1.54912 * 104.83151 * 204.09634 * 12 11 9 14 14 C 1.55163 * 101.57912 * 322.98769 * 13 12 11 15 15 O 1.42899 * 110.71588 * 276.96515 * 14 13 12 16 16 C 1.50689 * 110.71926 * 153.86826 * 14 13 12 17 17 H 1.08007 * 120.00032 * 241.45501 * 16 14 13 18 18 C 1.37876 * 120.00085 * 61.45389 * 16 14 13 19 19 N 1.31511 * 120.00217 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 120.00109 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47202 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47313 * 120.00174 * 20 18 16 23 23 H 1.48503 * 109.46866 * 240.00047 * 20 18 16 24 24 C 1.47013 * 125.64850 * 179.71856 * 11 9 8 25 25 C 1.38233 * 120.00035 * 359.77290 * 6 5 4 26 26 C 1.38230 * 120.00047 * 0.02562 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.99754 * 180.25571 * 5 4 3 34 34 H 1.09002 * 109.47387 * 29.97991 * 7 6 5 35 35 H 1.09002 * 109.46922 * 149.97859 * 7 6 5 36 36 H 1.09002 * 109.47020 * 300.00320 * 8 7 6 37 37 H 1.09002 * 109.47204 * 60.00136 * 8 7 6 38 38 H 1.09003 * 110.36616 * 322.92918 * 12 11 9 39 39 H 1.08998 * 110.37115 * 85.24989 * 12 11 9 40 40 H 1.08997 * 111.01017 * 81.05969 * 13 12 11 41 41 H 1.09000 * 111.00023 * 204.87942 * 13 12 11 42 42 H 0.96698 * 114.00000 * 298.54223 * 15 14 13 43 43 H 0.97003 * 120.00438 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.88414 * 298.39347 * 24 11 9 45 45 H 1.09007 * 109.88352 * 59.55906 * 24 11 9 46 46 H 1.08001 * 119.99633 * 179.97438 * 25 6 5 47 47 H 1.08008 * 119.99880 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7247 3.3754 -1.1971 6 6 2.9547 4.0272 0.0002 7 6 3.4569 5.4480 0.0001 8 6 4.9869 5.4481 0.0012 9 6 5.4892 6.8689 0.0018 10 8 4.7010 7.7907 0.0019 11 7 6.8143 7.1153 0.0022 12 6 7.8779 6.0945 0.0016 13 6 9.1105 6.8058 0.6138 14 6 8.9669 8.2359 0.0293 15 8 9.5129 8.3002 -1.2897 16 6 9.6288 9.2481 0.9282 17 1 9.0423 10.0346 1.3798 18 6 10.9832 9.1703 1.1742 19 7 11.6973 8.2123 0.6248 20 14 11.8037 10.4246 2.2891 21 1 10.7881 11.3915 2.7780 22 1 12.4227 9.7289 3.4458 23 1 12.8526 11.1511 1.5292 24 6 7.4383 8.4464 -0.0030 25 6 2.7235 3.3757 1.1972 26 6 2.2629 2.0724 1.1972 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0926 1.5599 -2.1324 33 1 2.9050 3.8844 -2.1324 34 1 3.0941 5.9616 -0.8902 35 1 3.0929 5.9620 0.8898 36 1 5.3496 4.9345 0.8915 37 1 5.3509 4.9341 -0.8885 38 1 7.5870 5.2431 0.6169 39 1 8.0933 5.7715 -1.0169 40 1 9.0524 6.8209 1.7021 41 1 10.0369 6.3381 0.2805 42 1 10.4577 8.0993 -1.3344 43 1 12.6503 8.1577 0.7976 44 1 7.1553 8.9849 -0.9075 45 1 7.1244 9.0065 0.8779 46 1 2.9035 3.8848 2.1326 47 1 2.0826 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592835434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:03 Heat of formation + Delta-G solvation = -99.763017 kcal Electronic energy + Delta-G solvation = -25821.335693 eV Core-core repulsion = 22160.089924 eV Total energy + Delta-G solvation = -3661.245769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.16597 -40.35145 -39.03059 -36.13058 -35.99808 -34.21881 -33.43768 -31.77190 -31.52070 -30.27340 -29.50201 -27.22857 -25.63705 -23.98796 -23.58543 -23.16984 -21.58371 -21.21946 -20.13428 -19.16958 -18.20220 -17.21078 -16.92816 -16.85657 -16.68047 -16.34408 -16.11159 -15.82077 -15.42594 -14.82768 -14.69286 -14.53653 -14.37986 -14.07412 -14.02858 -13.87043 -13.66362 -13.39725 -13.25337 -13.14396 -13.06492 -12.69221 -12.67194 -12.46207 -12.34446 -12.28608 -12.26857 -11.99268 -11.86438 -11.63175 -11.58993 -11.28176 -10.91911 -10.63356 -10.15208 -9.77644 -9.63084 -9.37272 -8.25760 -6.39915 0.43563 0.54900 1.39090 1.43650 1.53461 1.61794 2.04799 2.39063 2.86824 2.99561 3.48636 3.83108 3.89946 3.93042 3.99900 4.07624 4.12651 4.16686 4.21276 4.34324 4.37776 4.43808 4.54452 4.56286 4.58638 4.64652 4.67441 4.72058 4.75880 4.92104 4.94539 5.09707 5.10241 5.11869 5.16868 5.22831 5.27945 5.28233 5.41314 5.46360 5.53001 5.57331 5.75660 5.77418 5.78426 6.07539 6.16990 6.58936 6.65959 7.13814 7.30204 7.39644 8.80339 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029054 B = 0.002201 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.489582 B =12715.627086 C =12889.053633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.123 4.123 5 C -0.122 4.122 6 C -0.094 4.094 7 C -0.057 4.057 8 C -0.114 4.114 9 C 0.516 3.484 10 O -0.594 6.594 11 N -0.613 5.613 12 C 0.104 3.896 13 C -0.125 4.125 14 C 0.234 3.766 15 O -0.593 6.593 16 C -0.563 4.563 17 H 0.049 0.951 18 C 0.038 3.962 19 N -0.904 5.904 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.274 1.274 23 H -0.278 1.278 24 C 0.128 3.872 25 C -0.122 4.122 26 C -0.123 4.123 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.380 0.620 43 H 0.272 0.728 44 H 0.041 0.959 45 H 0.057 0.943 46 H 0.128 0.872 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.681 -18.764 -0.463 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.094 4.094 7 C -0.095 4.095 8 C -0.154 4.154 9 C 0.307 3.693 10 O -0.476 6.476 11 N -0.346 5.346 12 C -0.018 4.018 13 C -0.164 4.164 14 C 0.194 3.806 15 O -0.402 6.402 16 C -0.601 4.601 17 H 0.067 0.933 18 C -0.164 4.164 19 N -0.543 5.543 20 Si 0.784 3.216 21 H -0.202 1.202 22 H -0.200 1.200 23 H -0.204 1.204 24 C 0.005 3.995 25 C -0.140 4.140 26 C -0.141 4.141 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.230 0.770 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.146 0.854 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.609 -18.229 -0.625 24.668 hybrid contribution 1.365 1.159 0.636 1.900 sum -15.244 -17.069 0.011 22.886 Atomic orbital electron populations 1.21737 0.94379 1.02329 1.01801 1.20582 0.96403 0.91524 1.03599 1.20194 0.98800 0.97242 0.93064 1.21242 0.99788 0.94639 0.98423 1.21241 0.99685 0.95307 0.97790 1.19835 1.00240 0.95367 0.93924 1.20212 0.92933 0.92875 1.03457 1.21610 0.96726 0.90880 1.06166 1.21175 0.79937 0.93000 0.75180 1.90642 1.55389 1.48483 1.53056 1.48770 1.05722 1.08521 1.71568 1.22544 0.86677 0.91029 1.01553 1.23076 0.96789 0.97055 0.99485 1.19615 0.87211 0.92963 0.80825 1.86120 1.29307 1.93885 1.30859 1.21743 0.94531 1.14003 1.29813 0.93257 1.25572 0.97384 0.96968 0.96460 1.69748 1.07853 1.32326 1.44368 0.85510 0.78170 0.79159 0.78765 1.20197 1.19968 1.20381 1.21762 0.93456 0.84768 0.99515 1.21237 0.99657 0.95320 0.97796 1.21242 0.99781 0.94657 0.98425 0.93019 0.91185 0.93022 0.90309 0.90301 0.84652 0.85419 0.91318 0.91261 0.87033 0.87183 0.88074 0.90891 0.92459 0.90135 0.77046 0.91864 0.94049 0.92511 0.85391 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.08 -0.94 6.07 29.85 0.18 -0.76 16 3 C -0.09 -1.48 5.13 -19.86 -0.10 -1.58 16 4 C -0.12 -2.06 9.70 22.27 0.22 -1.84 16 5 C -0.12 -2.34 9.70 22.27 0.22 -2.12 16 6 C -0.09 -1.95 5.13 -19.87 -0.10 -2.05 16 7 C -0.06 -1.37 4.63 29.85 0.14 -1.23 16 8 C -0.11 -2.83 4.69 29.85 0.14 -2.69 16 9 C 0.52 18.57 7.85 87.66 0.69 19.26 16 10 O -0.59 -25.84 16.31 -3.05 -0.05 -25.89 16 11 N -0.61 -23.70 3.33 -811.77 -2.70 -26.40 16 12 C 0.10 3.47 6.68 86.86 0.58 4.05 16 13 C -0.13 -5.25 5.47 31.99 0.17 -5.08 16 14 C 0.23 11.36 0.85 -10.35 -0.01 11.36 16 15 O -0.59 -29.93 13.07 -148.98 -1.95 -31.87 16 16 C -0.56 -29.93 8.22 25.60 0.21 -29.72 16 17 H 0.05 2.69 7.58 -2.91 -0.02 2.67 16 18 C 0.04 1.93 5.28 84.65 0.45 2.38 16 19 N -0.90 -45.63 10.67 21.45 0.23 -45.40 16 20 Si 0.96 41.34 29.54 68.60 2.03 43.37 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.13 5.95 6.23 86.73 0.54 6.49 16 25 C -0.12 -2.33 9.70 22.27 0.22 -2.12 16 26 C -0.12 -2.06 9.70 22.27 0.22 -1.85 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 31 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 32 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.07 1.78 8.04 -2.39 -0.02 1.76 16 35 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 36 H 0.11 2.36 7.85 -2.39 -0.02 2.34 16 37 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.10 2.61 7.48 -2.39 -0.02 2.59 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 41 H 0.08 3.49 7.54 -2.39 -0.02 3.47 16 42 H 0.38 19.06 7.46 -74.06 -0.55 18.50 16 43 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 44 H 0.04 2.03 8.07 -2.39 -0.02 2.01 16 45 H 0.06 2.75 7.66 -2.38 -0.02 2.73 16 46 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 47 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -62.05 384.34 2.42 -59.63 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.40 Total: 34.82 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 4.46 Total: -8.27 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -2.47 Total: -71.79 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -2.00 Total: -57.76 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -62.05 2.42 -59.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592835434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.130 kcal (2) G-P(sol) polarization free energy of solvation -62.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds