Wall clock time and date at job start Tue Mar 31 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47031 * 2 1 4 4 C 1.38230 * 120.00170 * 89.99889 * 3 2 1 5 5 C 1.38232 * 119.99957 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00297 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00419 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46787 * 0.02562 * 7 6 5 9 9 C 1.53000 * 109.46734 * 119.99489 * 7 6 5 10 10 C 1.50695 * 109.47393 * 239.99948 * 7 6 5 11 11 O 1.21280 * 119.99805 * 274.86033 * 10 7 6 12 12 N 1.34774 * 120.00224 * 94.85468 * 10 7 6 13 13 C 1.47022 * 125.64610 * 5.07774 * 12 10 7 14 14 C 1.54318 * 107.27216 * 181.02032 * 13 12 10 15 15 C 1.55156 * 102.94340 * 22.19257 * 14 13 12 16 16 O 1.42898 * 111.00394 * 82.57140 * 15 14 13 17 17 C 1.50700 * 111.00844 * 206.38390 * 15 14 13 18 18 H 1.08000 * 119.99911 * 118.54147 * 17 15 14 19 19 C 1.37876 * 120.00138 * 298.55127 * 17 15 14 20 20 N 1.31510 * 119.99894 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 119.99961 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47469 * 89.99564 * 21 19 17 23 23 H 1.48507 * 109.47155 * 209.99706 * 21 19 17 24 24 H 1.48502 * 109.47233 * 329.99436 * 21 19 17 25 25 C 1.47422 * 125.65062 * 184.76972 * 12 10 7 26 26 C 1.38241 * 119.99561 * 0.27053 * 6 5 4 27 27 C 1.38234 * 119.99995 * 359.52390 * 26 6 5 28 28 H 1.08994 * 109.47195 * 300.00326 * 1 2 3 29 29 H 1.09001 * 109.47382 * 60.00308 * 1 2 3 30 30 H 1.09000 * 109.46836 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47405 * 240.00174 * 2 1 3 32 32 H 1.09001 * 109.47382 * 119.99691 * 2 1 3 33 33 H 1.08000 * 120.00158 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.99890 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.46838 * 55.03607 * 9 7 6 36 36 H 1.08997 * 109.47824 * 295.03173 * 9 7 6 37 37 H 1.09005 * 109.46708 * 175.03135 * 9 7 6 38 38 H 1.08999 * 109.88456 * 300.43554 * 13 12 10 39 39 H 1.09000 * 109.88393 * 61.45041 * 13 12 10 40 40 H 1.09006 * 110.72329 * 140.55393 * 14 13 12 41 41 H 1.09003 * 110.72349 * 263.82862 * 14 13 12 42 42 H 0.96703 * 114.00080 * 61.45558 * 16 15 14 43 43 H 0.96998 * 119.99754 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.36289 * 274.74610 * 25 12 10 45 45 H 1.08997 * 110.36903 * 37.06690 * 25 12 10 46 46 H 1.07999 * 119.99637 * 179.72918 * 26 6 5 47 47 H 1.08004 * 119.99638 * 180.27283 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1970 6 6 2.9554 4.0269 -0.0001 7 6 3.4588 5.4474 -0.0002 8 1 3.5801 5.7899 1.0275 9 6 4.8070 5.5105 -0.7208 10 6 2.4672 6.3318 -0.7112 11 8 2.5096 6.4421 -1.9182 12 7 1.5332 7.0000 -0.0058 13 6 1.4336 7.0410 1.4605 14 6 0.2022 7.9020 1.8122 15 6 -0.6522 7.8312 0.5190 16 8 -1.4320 6.6342 0.4852 17 6 -1.5304 9.0485 0.3843 18 1 -1.4125 9.7083 -0.4625 19 6 -2.4842 9.3198 1.3422 20 7 -2.6279 8.5161 2.3732 21 14 -3.5722 10.8290 1.1756 22 1 -4.7964 10.4750 0.4131 23 1 -3.9535 11.3158 2.5258 24 1 -2.8318 11.8960 0.4556 25 6 0.4461 7.8160 -0.5764 26 6 2.7202 3.3769 -1.1972 27 6 2.2629 2.0723 -1.1972 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0823 1.5636 2.1324 34 1 2.9035 3.8849 2.1324 35 1 4.7053 5.0858 -1.7195 36 1 5.5470 4.9419 -0.1577 37 1 5.1290 6.5490 -0.7986 38 1 1.3041 6.0319 1.8517 39 1 2.3341 7.4887 1.8809 40 1 -0.3393 7.4743 2.6560 41 1 0.4978 8.9298 2.0233 42 1 -2.0655 6.5569 1.2116 43 1 -3.2992 8.7068 3.0469 44 1 0.7975 8.8279 -0.7787 45 1 0.0654 7.3564 -1.4885 46 1 2.8968 3.8872 -2.1325 47 1 2.0834 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:22 Heat of formation + Delta-G solvation = -78.791221 kcal Electronic energy + Delta-G solvation = -27278.178015 eV Core-core repulsion = 23617.841651 eV Total energy + Delta-G solvation = -3660.336364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.16451 -38.95098 -37.31536 -34.97771 -34.26816 -32.46136 -32.23070 -30.85208 -29.73295 -28.54088 -28.30777 -25.62004 -24.41341 -23.08809 -22.72034 -21.84969 -20.62435 -19.67213 -18.53897 -17.24831 -16.79815 -16.40601 -15.46509 -15.21209 -14.96509 -14.90464 -14.72165 -14.21835 -13.97567 -13.72100 -13.51261 -13.35405 -13.12766 -12.89180 -12.82313 -12.36224 -12.31572 -11.93677 -11.75099 -11.65671 -11.59295 -11.42441 -11.34151 -11.29607 -11.11382 -10.91264 -10.79515 -10.68651 -10.61847 -10.47645 -10.03076 -9.44883 -9.33348 -8.80965 -8.69355 -8.39296 -8.22114 -7.96782 -6.29463 -4.37460 1.36415 1.51443 3.06914 3.19495 3.26825 3.30064 3.55653 3.85179 4.26084 4.67931 4.76064 4.86355 4.90641 4.99758 5.07328 5.09927 5.27441 5.28798 5.36703 5.47467 5.54366 5.55542 5.62212 5.69385 5.76473 5.80395 5.85839 5.89846 5.91807 6.02679 6.08469 6.15167 6.17202 6.22371 6.29678 6.43510 6.50485 6.65113 6.67665 6.71182 6.89113 6.97188 7.08671 7.28803 7.33488 7.72295 8.01389 8.15875 8.63310 8.67242 9.30030 9.39131 10.77929 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.003744 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.332438 B = 7476.677051 C = 8554.368208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.085 4.085 4 C -0.118 4.118 5 C -0.105 4.105 6 C -0.074 4.074 7 C -0.068 4.068 8 H 0.093 0.907 9 C -0.129 4.129 10 C 0.532 3.468 11 O -0.553 6.553 12 N -0.604 5.604 13 C 0.098 3.902 14 C -0.135 4.135 15 C 0.249 3.751 16 O -0.581 6.581 17 C -0.535 4.535 18 H 0.064 0.936 19 C 0.074 3.926 20 N -0.895 5.895 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.120 3.880 26 C -0.099 4.099 27 C -0.118 4.118 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.380 0.620 43 H 0.268 0.732 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.128 0.872 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.919 -12.332 0.927 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.136 4.136 5 C -0.124 4.124 6 C -0.075 4.075 7 C -0.089 4.089 8 H 0.111 0.889 9 C -0.186 4.186 10 C 0.320 3.680 11 O -0.432 6.432 12 N -0.335 5.335 13 C -0.025 4.025 14 C -0.174 4.174 15 C 0.208 3.792 16 O -0.390 6.390 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.129 4.129 20 N -0.534 5.534 21 Si 0.729 3.271 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.001 4.001 26 C -0.117 4.117 27 C -0.136 4.136 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.229 0.771 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.145 0.855 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.248 -12.434 -0.117 16.767 hybrid contribution -1.054 1.038 0.720 1.645 sum 10.194 -11.396 0.603 15.302 Atomic orbital electron populations 1.21758 0.94627 1.01478 1.02686 1.20523 0.96297 0.92700 1.02468 1.19885 0.99101 0.96269 0.93276 1.20925 1.00400 0.94855 0.97432 1.21007 0.99313 0.94823 0.97210 1.19396 1.00450 0.93956 0.93666 1.20250 0.95282 0.92028 1.01351 0.88913 1.21652 0.93751 1.02296 1.00915 1.19960 0.81153 0.79717 0.87141 1.90632 1.73098 1.65344 1.14146 1.48605 1.28772 1.48272 1.07868 1.22203 0.99706 1.00506 0.80069 1.23171 0.93852 0.98467 1.01919 1.19637 0.87007 0.84256 0.88272 1.86150 1.55522 1.42862 1.54429 1.21451 1.18484 1.08738 1.08701 0.91756 1.24975 0.96611 0.96862 0.94462 1.69716 1.34520 1.37715 1.11476 0.86431 0.80670 0.82511 0.77454 1.20402 1.21060 1.19704 1.22409 0.85868 0.93700 0.98138 1.21116 0.97985 0.94429 0.98153 1.20972 1.00280 0.94854 0.97453 0.92351 0.92399 0.92578 0.91268 0.91246 0.86188 0.86039 0.91368 0.91985 0.92127 0.92408 0.92942 0.89530 0.91375 0.77057 0.92250 0.91090 0.91335 0.85455 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 37.16 0.37 -1.08 16 2 C -0.08 -0.79 6.06 -27.88 -0.17 -0.96 16 3 C -0.09 -1.04 5.13 -104.62 -0.54 -1.58 16 4 C -0.12 -1.45 9.70 -39.59 -0.38 -1.83 16 5 C -0.11 -1.39 9.67 -39.59 -0.38 -1.77 16 6 C -0.07 -1.09 4.77 -104.62 -0.50 -1.58 16 7 C -0.07 -1.00 2.61 -92.92 -0.24 -1.24 16 8 H 0.09 1.21 6.72 -51.93 -0.35 0.86 16 9 C -0.13 -1.63 8.66 37.16 0.32 -1.31 16 10 C 0.53 10.17 6.49 -10.99 -0.07 10.10 16 11 O -0.55 -12.06 16.13 5.56 0.09 -11.97 16 12 N -0.60 -12.13 3.32 -170.39 -0.57 -12.70 16 13 C 0.10 1.78 5.95 -3.07 -0.02 1.76 16 14 C -0.14 -2.89 5.38 -24.90 -0.13 -3.02 16 15 C 0.25 6.00 0.87 -89.50 -0.08 5.92 16 16 O -0.58 -14.88 13.17 -35.23 -0.46 -15.34 16 17 C -0.54 -13.93 8.27 -34.44 -0.28 -14.21 16 18 H 0.06 1.68 7.79 -52.49 -0.41 1.27 16 19 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 20 N -0.90 -22.83 10.76 55.43 0.60 -22.24 16 21 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.12 2.73 6.08 -2.41 -0.01 2.72 16 26 C -0.10 -1.47 8.74 -39.58 -0.35 -1.82 16 27 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.12 1.37 7.95 -52.48 -0.42 0.96 16 35 H 0.07 0.91 7.11 -51.93 -0.37 0.54 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.81 7.99 -51.93 -0.42 0.40 16 40 H 0.09 1.93 7.55 -51.93 -0.39 1.54 16 41 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 42 H 0.38 9.66 7.56 45.56 0.34 10.00 16 43 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 44 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 45 H 0.07 1.66 8.09 -51.93 -0.42 1.24 16 46 H 0.13 1.99 7.06 -52.49 -0.37 1.61 16 47 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -28.88 380.86 -9.57 -38.45 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.99 Total: 13.02 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -2.95 Total: -10.05 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.03 Total: -34.93 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.37 Total: -27.31 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.88 -9.57 -38.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.342 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds