Wall clock time and date at job start Tue Mar 31 2020 11:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47031 * 2 1 4 4 C 1.38230 * 120.00170 * 89.99889 * 3 2 1 5 5 C 1.38232 * 119.99957 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00297 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00419 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46787 * 0.02562 * 7 6 5 9 9 C 1.53000 * 109.46734 * 119.99489 * 7 6 5 10 10 C 1.50695 * 109.47393 * 239.99948 * 7 6 5 11 11 O 1.21280 * 119.99805 * 274.86033 * 10 7 6 12 12 N 1.34774 * 120.00224 * 94.85468 * 10 7 6 13 13 C 1.47022 * 125.64610 * 5.07774 * 12 10 7 14 14 C 1.54318 * 107.27216 * 181.02032 * 13 12 10 15 15 C 1.55156 * 102.94340 * 22.19257 * 14 13 12 16 16 O 1.42898 * 111.00394 * 82.57140 * 15 14 13 17 17 C 1.50700 * 111.00844 * 206.38390 * 15 14 13 18 18 H 1.08000 * 119.99911 * 118.54147 * 17 15 14 19 19 C 1.37876 * 120.00138 * 298.55127 * 17 15 14 20 20 N 1.31510 * 119.99894 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 119.99961 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47469 * 89.99564 * 21 19 17 23 23 H 1.48507 * 109.47155 * 209.99706 * 21 19 17 24 24 H 1.48502 * 109.47233 * 329.99436 * 21 19 17 25 25 C 1.47422 * 125.65062 * 184.76972 * 12 10 7 26 26 C 1.38241 * 119.99561 * 0.27053 * 6 5 4 27 27 C 1.38234 * 119.99995 * 359.52390 * 26 6 5 28 28 H 1.08994 * 109.47195 * 300.00326 * 1 2 3 29 29 H 1.09001 * 109.47382 * 60.00308 * 1 2 3 30 30 H 1.09000 * 109.46836 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47405 * 240.00174 * 2 1 3 32 32 H 1.09001 * 109.47382 * 119.99691 * 2 1 3 33 33 H 1.08000 * 120.00158 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.99890 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.46838 * 55.03607 * 9 7 6 36 36 H 1.08997 * 109.47824 * 295.03173 * 9 7 6 37 37 H 1.09005 * 109.46708 * 175.03135 * 9 7 6 38 38 H 1.08999 * 109.88456 * 300.43554 * 13 12 10 39 39 H 1.09000 * 109.88393 * 61.45041 * 13 12 10 40 40 H 1.09006 * 110.72329 * 140.55393 * 14 13 12 41 41 H 1.09003 * 110.72349 * 263.82862 * 14 13 12 42 42 H 0.96703 * 114.00080 * 61.45558 * 16 15 14 43 43 H 0.96998 * 119.99754 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.36289 * 274.74610 * 25 12 10 45 45 H 1.08997 * 110.36903 * 37.06690 * 25 12 10 46 46 H 1.07999 * 119.99637 * 179.72918 * 26 6 5 47 47 H 1.08004 * 119.99638 * 180.27283 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1970 6 6 2.9554 4.0269 -0.0001 7 6 3.4588 5.4474 -0.0002 8 1 3.5801 5.7899 1.0275 9 6 4.8070 5.5105 -0.7208 10 6 2.4672 6.3318 -0.7112 11 8 2.5096 6.4421 -1.9182 12 7 1.5332 7.0000 -0.0058 13 6 1.4336 7.0410 1.4605 14 6 0.2022 7.9020 1.8122 15 6 -0.6522 7.8312 0.5190 16 8 -1.4320 6.6342 0.4852 17 6 -1.5304 9.0485 0.3843 18 1 -1.4125 9.7083 -0.4625 19 6 -2.4842 9.3198 1.3422 20 7 -2.6279 8.5161 2.3732 21 14 -3.5722 10.8290 1.1756 22 1 -4.7964 10.4750 0.4131 23 1 -3.9535 11.3158 2.5258 24 1 -2.8318 11.8960 0.4556 25 6 0.4461 7.8160 -0.5764 26 6 2.7202 3.3769 -1.1972 27 6 2.2629 2.0723 -1.1972 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0823 1.5636 2.1324 34 1 2.9035 3.8849 2.1324 35 1 4.7053 5.0858 -1.7195 36 1 5.5470 4.9419 -0.1577 37 1 5.1290 6.5490 -0.7986 38 1 1.3041 6.0319 1.8517 39 1 2.3341 7.4887 1.8809 40 1 -0.3393 7.4743 2.6560 41 1 0.4978 8.9298 2.0233 42 1 -2.0655 6.5569 1.2116 43 1 -3.2992 8.7068 3.0469 44 1 0.7975 8.8279 -0.7787 45 1 0.0654 7.3564 -1.4885 46 1 2.8968 3.8872 -2.1325 47 1 2.0834 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:21 Heat of formation + Delta-G solvation = -94.899858 kcal Electronic energy + Delta-G solvation = -27278.876538 eV Core-core repulsion = 23617.841651 eV Total energy + Delta-G solvation = -3661.034887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50001 -40.20760 -38.97594 -36.09947 -36.00545 -34.22491 -33.45498 -31.85510 -31.43537 -30.06407 -29.44857 -27.35132 -25.59623 -24.39363 -23.73706 -23.15884 -21.76756 -21.39149 -19.98176 -19.10875 -18.30006 -17.57463 -16.93325 -16.56747 -16.52257 -16.31095 -16.11753 -15.76977 -15.19048 -14.95155 -14.66858 -14.56602 -14.23696 -14.18082 -13.96432 -13.81590 -13.75041 -13.49497 -13.24065 -13.11667 -13.00965 -12.70999 -12.67265 -12.58746 -12.48723 -12.30828 -12.25459 -12.03844 -11.85915 -11.71136 -11.63330 -11.28004 -10.86850 -10.63340 -10.16276 -9.81916 -9.58117 -9.42767 -8.24375 -6.39348 0.34297 0.50416 1.41391 1.44709 1.52980 1.60257 2.05971 2.39975 2.81201 3.00424 3.53309 3.67767 3.81203 3.87640 3.95893 4.01261 4.09644 4.12529 4.27218 4.32814 4.38245 4.39276 4.52261 4.56289 4.58054 4.66827 4.68029 4.72253 4.83067 4.86245 4.91557 5.05335 5.07447 5.14019 5.16145 5.19356 5.21420 5.29847 5.39144 5.44390 5.51061 5.53294 5.67075 5.72768 5.76619 6.08259 6.10848 6.60757 6.65466 7.12976 7.30819 7.39349 8.81501 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.003744 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.332438 B = 7476.677051 C = 8554.368208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.087 4.087 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.092 4.092 7 C -0.058 4.058 8 H 0.117 0.883 9 C -0.125 4.125 10 C 0.526 3.474 11 O -0.589 6.589 12 N -0.609 5.609 13 C 0.105 3.895 14 C -0.125 4.125 15 C 0.236 3.764 16 O -0.593 6.593 17 C -0.564 4.564 18 H 0.052 0.948 19 C 0.040 3.960 20 N -0.904 5.904 21 Si 0.958 3.042 22 H -0.280 1.280 23 H -0.276 1.276 24 H -0.272 1.272 25 C 0.125 3.875 26 C -0.120 4.120 27 C -0.129 4.129 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.377 0.623 43 H 0.271 0.729 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.108 0.892 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.838 -13.418 2.963 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.087 4.087 4 C -0.140 4.140 5 C -0.127 4.127 6 C -0.092 4.092 7 C -0.079 4.079 8 H 0.135 0.865 9 C -0.182 4.182 10 C 0.316 3.684 11 O -0.470 6.470 12 N -0.340 5.340 13 C -0.017 4.017 14 C -0.163 4.163 15 C 0.196 3.804 16 O -0.401 6.401 17 C -0.602 4.602 18 H 0.070 0.930 19 C -0.162 4.162 20 N -0.543 5.543 21 Si 0.784 3.216 22 H -0.206 1.206 23 H -0.201 1.201 24 H -0.197 1.197 25 C 0.002 3.998 26 C -0.139 4.139 27 C -0.147 4.147 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.226 0.774 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.126 0.874 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.184 -13.530 1.934 18.310 hybrid contribution -1.391 1.320 0.039 1.918 sum 10.793 -12.211 1.974 16.416 Atomic orbital electron populations 1.21755 0.94867 1.02408 1.01486 1.20577 0.95908 0.91210 1.04002 1.20245 0.98072 0.97542 0.92857 1.21303 0.99472 0.94740 0.98483 1.21300 0.98700 0.95317 0.97389 1.19465 1.01668 0.93910 0.94162 1.20280 0.94420 0.91081 1.02073 0.86471 1.21657 0.93418 1.02737 1.00421 1.20887 0.81211 0.79318 0.86968 1.90608 1.74081 1.66306 1.15993 1.48704 1.28329 1.48275 1.08718 1.22245 0.99735 1.00918 0.78832 1.22942 0.94626 0.98834 0.99920 1.19791 0.87205 0.83132 0.90261 1.86140 1.55787 1.43655 1.54543 1.21663 1.20026 1.09648 1.08892 0.92957 1.25562 0.97366 0.99116 0.94144 1.69771 1.34617 1.38392 1.11533 0.85566 0.78818 0.79661 0.77604 1.20642 1.20094 1.19720 1.22161 0.86787 0.93973 0.96842 1.21127 0.99514 0.95397 0.97825 1.21184 1.00312 0.94480 0.98727 0.93187 0.93949 0.90628 0.90164 0.89328 0.83668 0.83800 0.92898 0.89088 0.92045 0.91062 0.89143 0.90509 0.91844 0.77367 0.91925 0.91107 0.94159 0.87431 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.89 71.98 0.71 -1.90 16 2 C -0.08 -1.32 6.06 29.85 0.18 -1.14 16 3 C -0.09 -1.96 5.13 -19.87 -0.10 -2.07 16 4 C -0.12 -2.67 9.70 22.27 0.22 -2.45 16 5 C -0.11 -2.59 9.67 22.27 0.22 -2.37 16 6 C -0.09 -2.56 4.77 -19.86 -0.09 -2.66 16 7 C -0.06 -1.60 2.61 -12.29 -0.03 -1.63 16 8 H 0.12 2.65 6.72 -2.39 -0.02 2.63 16 9 C -0.12 -2.99 8.66 71.98 0.62 -2.37 16 10 C 0.53 20.04 6.49 87.66 0.57 20.61 16 11 O -0.59 -26.48 16.13 -3.03 -0.05 -26.53 16 12 N -0.61 -24.26 3.32 -811.38 -2.70 -26.96 16 13 C 0.10 3.58 5.95 86.73 0.52 4.10 16 14 C -0.12 -5.23 5.38 31.78 0.17 -5.06 16 15 C 0.24 11.56 0.87 -10.07 -0.01 11.55 16 16 O -0.59 -30.93 13.17 -148.98 -1.96 -32.90 16 17 C -0.56 -29.86 8.27 25.60 0.21 -29.65 16 18 H 0.05 2.81 7.79 -2.91 -0.02 2.79 16 19 C 0.04 2.03 5.29 84.65 0.45 2.48 16 20 N -0.90 -45.83 10.76 21.45 0.23 -45.60 16 21 Si 0.96 41.10 29.54 68.60 2.03 43.13 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C 0.13 5.85 6.08 86.93 0.53 6.37 16 26 C -0.12 -3.62 8.74 22.27 0.19 -3.43 16 27 C -0.13 -3.35 9.70 22.27 0.22 -3.13 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 32 H 0.09 1.15 8.09 -2.39 -0.02 1.14 16 33 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 34 H 0.14 2.68 7.95 -2.91 -0.02 2.66 16 35 H 0.05 1.42 7.11 -2.39 -0.02 1.40 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 39 H 0.09 2.46 7.99 -2.39 -0.02 2.44 16 40 H 0.08 3.36 7.55 -2.38 -0.02 3.34 16 41 H 0.06 2.69 8.03 -2.39 -0.02 2.67 16 42 H 0.38 19.51 7.56 -74.06 -0.56 18.95 16 43 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 44 H 0.07 3.24 8.04 -2.38 -0.02 3.22 16 45 H 0.04 2.06 8.09 -2.39 -0.02 2.04 16 46 H 0.11 3.56 7.06 -2.91 -0.02 3.54 16 47 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -63.45 380.86 2.51 -60.94 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: 0.39 Total: 40.65 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 4.57 Total: -12.73 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -2.47 Total: -72.56 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -2.01 Total: -59.43 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -63.45 2.51 -60.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.960 kcal (2) G-P(sol) polarization free energy of solvation -63.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds