Wall clock time and date at job start Tue Mar 31 2020 11:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47224 * 2 1 4 4 C 1.38231 * 120.00361 * 89.99706 * 3 2 1 5 5 C 1.38235 * 120.00095 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99681 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99780 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46630 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47122 * 240.00260 * 7 6 5 10 10 C 1.50703 * 109.47004 * 119.99819 * 7 6 5 11 11 O 1.21280 * 119.99368 * 33.29129 * 10 7 6 12 12 N 1.34773 * 119.99974 * 213.28983 * 10 7 6 13 13 C 1.47028 * 125.64581 * 174.93769 * 12 10 7 14 14 C 1.54330 * 107.39871 * 181.10188 * 13 12 10 15 15 C 1.55159 * 102.94126 * 22.11278 * 14 13 12 16 16 O 1.42900 * 111.00290 * 82.57553 * 15 14 13 17 17 C 1.50701 * 111.00246 * 206.38539 * 15 14 13 18 18 H 1.08001 * 120.00049 * 118.54404 * 17 15 14 19 19 C 1.37880 * 119.99983 * 298.55086 * 17 15 14 20 20 N 1.31518 * 119.99919 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00041 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46830 * 89.99927 * 21 19 17 23 23 H 1.48498 * 109.47196 * 209.99910 * 21 19 17 24 24 H 1.48499 * 109.46978 * 329.99579 * 21 19 17 25 25 C 1.47744 * 125.82514 * 354.84216 * 12 10 7 26 26 C 1.38235 * 120.00436 * 0.25627 * 6 5 4 27 27 C 1.38234 * 119.99499 * 270.02295 * 3 2 1 28 28 H 1.09001 * 109.46928 * 300.00468 * 1 2 3 29 29 H 1.09001 * 109.46827 * 60.00101 * 1 2 3 30 30 H 1.08995 * 109.47313 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47126 * 239.99939 * 2 1 3 32 32 H 1.08999 * 109.46961 * 119.99375 * 2 1 3 33 33 H 1.07995 * 119.99988 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.00139 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.46689 * 177.31968 * 9 7 6 36 36 H 1.08998 * 109.46921 * 297.31614 * 9 7 6 37 37 H 1.08998 * 109.47466 * 57.31818 * 9 7 6 38 38 H 1.08995 * 109.88295 * 61.60440 * 13 12 10 39 39 H 1.08993 * 109.87763 * 300.59158 * 13 12 10 40 40 H 1.09000 * 110.71781 * 140.48076 * 14 13 12 41 41 H 1.08999 * 110.71887 * 263.75036 * 14 13 12 42 42 H 0.96700 * 114.00337 * 61.44777 * 16 15 14 43 43 H 0.97004 * 119.99737 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.29116 * 37.02198 * 25 12 10 45 45 H 1.09005 * 110.52937 * 274.75947 * 25 12 10 46 46 H 1.07994 * 119.99893 * 179.72783 * 26 6 5 47 47 H 1.07999 * 120.00436 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0726 1.1971 5 6 2.7241 3.3757 1.1970 6 6 2.9545 4.0272 -0.0002 7 6 3.4569 5.4480 -0.0003 8 1 3.5784 5.7904 1.0274 9 6 2.4491 6.3452 -0.7216 10 6 4.7845 5.5114 -0.7107 11 8 5.0098 4.7680 -1.6420 12 7 5.7212 6.3941 -0.3110 13 6 7.0889 6.4913 -0.8417 14 6 7.8041 7.6204 -0.0701 15 6 6.9802 7.7215 1.2408 16 8 7.4000 6.7362 2.1868 17 6 7.0709 9.1054 1.8304 18 1 6.1784 9.7025 1.9463 19 6 8.2932 9.6093 2.2216 20 7 9.3799 8.8821 2.0807 21 14 8.4057 11.3251 2.9518 22 1 8.2451 11.2470 4.4260 23 1 9.7297 11.9147 2.6286 24 1 7.3317 12.1772 2.3812 25 6 5.5474 7.4270 0.7310 26 6 2.7186 3.3775 -1.1973 27 6 2.2623 2.0725 -1.1972 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.0831 1.5634 2.1324 34 1 2.9045 3.8847 2.1322 35 1 2.7892 7.3800 -0.6802 36 1 2.3636 6.0322 -1.7622 37 1 1.4766 6.2627 -0.2363 38 1 7.0579 6.7306 -1.9046 39 1 7.6134 5.5482 -0.6893 40 1 8.8373 7.3468 0.1438 41 1 7.7593 8.5564 -0.6269 42 1 8.3233 6.8222 2.4609 43 1 10.2398 9.2365 2.3563 44 1 4.9272 7.0451 1.5421 45 1 5.1032 8.3273 0.3065 46 1 2.8945 3.8880 -2.1326 47 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:26 Heat of formation + Delta-G solvation = -77.477939 kcal Electronic energy + Delta-G solvation = -26836.542944 eV Core-core repulsion = 23176.263528 eV Total energy + Delta-G solvation = -3660.279416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.15656 -38.95784 -37.30842 -34.96917 -34.21442 -32.61209 -32.27019 -30.81161 -29.83597 -28.53017 -28.23523 -25.23153 -24.79576 -23.40229 -22.63044 -21.70403 -20.47246 -19.85859 -18.57570 -17.22716 -16.80000 -16.14358 -15.54345 -15.30548 -15.12540 -14.98081 -14.61903 -14.08769 -13.88236 -13.84712 -13.60456 -13.38825 -13.12668 -13.01578 -12.62191 -12.52159 -12.34464 -12.04622 -11.93733 -11.68493 -11.61734 -11.44418 -11.36557 -11.26161 -11.11404 -10.86785 -10.74777 -10.69652 -10.60102 -10.48443 -10.04596 -9.56627 -9.23557 -8.74672 -8.72073 -8.41744 -8.25400 -7.98808 -6.32707 -4.41770 1.40222 1.56508 3.07488 3.16538 3.24450 3.26391 3.51830 3.92380 4.21855 4.64841 4.76551 4.82706 4.90709 4.93716 5.10220 5.15563 5.20839 5.31518 5.35465 5.42637 5.54173 5.59176 5.59448 5.70025 5.73268 5.82184 5.87082 5.94598 5.97011 5.98064 5.99685 6.12814 6.14180 6.21505 6.28970 6.30798 6.52935 6.56520 6.69677 6.79317 6.88812 6.97131 7.12959 7.26622 7.33275 7.68453 7.94771 8.12244 8.60343 8.64913 9.25234 9.33998 10.74587 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025955 B = 0.002812 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.511211 B = 9954.169293 C =10126.881288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.124 4.124 5 C -0.108 4.108 6 C -0.074 4.074 7 C -0.070 4.070 8 H 0.099 0.901 9 C -0.134 4.134 10 C 0.532 3.468 11 O -0.554 6.554 12 N -0.605 5.605 13 C 0.108 3.892 14 C -0.136 4.136 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.073 3.927 20 N -0.893 5.893 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.111 3.889 26 C -0.078 4.078 27 C -0.125 4.125 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.382 0.618 43 H 0.268 0.732 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.127 0.873 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.534 -9.943 -3.364 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.142 4.142 5 C -0.126 4.126 6 C -0.074 4.074 7 C -0.091 4.091 8 H 0.117 0.883 9 C -0.192 4.192 10 C 0.320 3.680 11 O -0.433 6.433 12 N -0.337 5.337 13 C -0.014 4.014 14 C -0.175 4.175 15 C 0.208 3.792 16 O -0.392 6.392 17 C -0.576 4.576 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.011 4.011 26 C -0.096 4.096 27 C -0.143 4.143 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.232 0.768 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.145 0.855 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.884 -10.576 -3.933 17.890 hybrid contribution 0.966 1.233 0.542 1.657 sum -12.918 -9.343 -3.390 16.299 Atomic orbital electron populations 1.21742 0.94905 1.01421 1.02206 1.20521 0.96011 0.92961 1.02640 1.19853 0.99512 0.96000 0.93333 1.20892 1.01179 0.94808 0.97341 1.21053 0.99220 0.94871 0.97426 1.19418 0.99897 0.94550 0.93569 1.20233 0.93278 0.93902 1.01730 0.88304 1.21694 0.97970 0.98877 1.00613 1.19965 0.84910 0.79408 0.83704 1.90626 1.80301 1.42735 1.29627 1.48677 1.12786 1.33363 1.38881 1.22043 0.81981 1.00169 0.97242 1.23196 1.00676 0.95640 0.97958 1.19586 0.87047 0.87178 0.85415 1.86114 1.33925 1.55666 1.63484 1.21414 0.94096 0.99457 1.42593 0.91717 1.24996 0.95429 0.98112 0.94450 1.69723 0.98864 1.37639 1.46959 0.86425 0.77553 0.83525 0.79520 1.20405 1.21067 1.19713 1.22581 1.00067 0.89528 0.88955 1.21072 0.95956 0.94385 0.98138 1.20976 1.01020 0.95020 0.97268 0.92586 0.92590 0.92629 0.91223 0.91222 0.86356 0.86012 0.91636 0.91912 0.91422 0.93011 0.92611 0.89572 0.91432 0.76840 0.92168 0.91309 0.90676 0.85474 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.90 37.16 0.37 -0.77 16 2 C -0.08 -0.77 6.06 -27.88 -0.17 -0.94 16 3 C -0.09 -1.04 5.13 -104.62 -0.54 -1.58 16 4 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 5 C -0.11 -1.47 9.67 -39.58 -0.38 -1.85 16 6 C -0.07 -1.10 4.71 -104.62 -0.49 -1.60 16 7 C -0.07 -1.07 2.52 -92.92 -0.23 -1.30 16 8 H 0.10 1.45 6.20 -51.93 -0.32 1.13 16 9 C -0.13 -1.69 8.94 37.16 0.33 -1.35 16 10 C 0.53 10.08 6.86 -10.99 -0.08 10.01 16 11 O -0.55 -11.76 14.94 5.56 0.08 -11.68 16 12 N -0.61 -11.97 3.34 -170.26 -0.57 -12.54 16 13 C 0.11 2.19 6.86 -3.06 -0.02 2.17 16 14 C -0.14 -2.97 5.38 -24.89 -0.13 -3.10 16 15 C 0.25 5.72 0.87 -89.63 -0.08 5.64 16 16 O -0.58 -14.31 13.16 -35.23 -0.46 -14.77 16 17 C -0.54 -13.31 8.27 -34.44 -0.28 -13.60 16 18 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 19 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 20 N -0.89 -22.55 10.76 55.43 0.60 -21.95 16 21 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 C 0.11 2.20 5.93 -2.36 -0.01 2.19 16 26 C -0.08 -1.14 8.01 -39.58 -0.32 -1.46 16 27 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.50 7.95 -52.49 -0.42 1.08 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.79 7.47 -51.93 -0.39 0.41 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.99 7.55 -51.93 -0.39 1.59 16 41 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 42 H 0.38 9.47 7.56 45.56 0.34 9.81 16 43 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 44 H 0.07 1.31 6.65 -51.93 -0.35 0.96 16 45 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 46 H 0.13 1.93 6.74 -52.49 -0.35 1.58 16 47 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -27.92 378.41 -9.47 -37.38 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.90 Total: 13.02 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -2.90 Total: -9.71 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.03 Total: -34.49 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.38 Total: -26.45 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -27.92 -9.47 -37.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.093 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds