Wall clock time and date at job start Tue Mar 31 2020 11:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47224 * 2 1 4 4 C 1.38231 * 120.00361 * 89.99706 * 3 2 1 5 5 C 1.38235 * 120.00095 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99681 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99780 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46630 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47122 * 240.00260 * 7 6 5 10 10 C 1.50703 * 109.47004 * 119.99819 * 7 6 5 11 11 O 1.21280 * 119.99368 * 33.29129 * 10 7 6 12 12 N 1.34773 * 119.99974 * 213.28983 * 10 7 6 13 13 C 1.47028 * 125.64581 * 174.93769 * 12 10 7 14 14 C 1.54330 * 107.39871 * 181.10188 * 13 12 10 15 15 C 1.55159 * 102.94126 * 22.11278 * 14 13 12 16 16 O 1.42900 * 111.00290 * 82.57553 * 15 14 13 17 17 C 1.50701 * 111.00246 * 206.38539 * 15 14 13 18 18 H 1.08001 * 120.00049 * 118.54404 * 17 15 14 19 19 C 1.37880 * 119.99983 * 298.55086 * 17 15 14 20 20 N 1.31518 * 119.99919 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00041 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46830 * 89.99927 * 21 19 17 23 23 H 1.48498 * 109.47196 * 209.99910 * 21 19 17 24 24 H 1.48499 * 109.46978 * 329.99579 * 21 19 17 25 25 C 1.47744 * 125.82514 * 354.84216 * 12 10 7 26 26 C 1.38235 * 120.00436 * 0.25627 * 6 5 4 27 27 C 1.38234 * 119.99499 * 270.02295 * 3 2 1 28 28 H 1.09001 * 109.46928 * 300.00468 * 1 2 3 29 29 H 1.09001 * 109.46827 * 60.00101 * 1 2 3 30 30 H 1.08995 * 109.47313 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47126 * 239.99939 * 2 1 3 32 32 H 1.08999 * 109.46961 * 119.99375 * 2 1 3 33 33 H 1.07995 * 119.99988 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.00139 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.46689 * 177.31968 * 9 7 6 36 36 H 1.08998 * 109.46921 * 297.31614 * 9 7 6 37 37 H 1.08998 * 109.47466 * 57.31818 * 9 7 6 38 38 H 1.08995 * 109.88295 * 61.60440 * 13 12 10 39 39 H 1.08993 * 109.87763 * 300.59158 * 13 12 10 40 40 H 1.09000 * 110.71781 * 140.48076 * 14 13 12 41 41 H 1.08999 * 110.71887 * 263.75036 * 14 13 12 42 42 H 0.96700 * 114.00337 * 61.44777 * 16 15 14 43 43 H 0.97004 * 119.99737 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.29116 * 37.02198 * 25 12 10 45 45 H 1.09005 * 110.52937 * 274.75947 * 25 12 10 46 46 H 1.07994 * 119.99893 * 179.72783 * 26 6 5 47 47 H 1.07999 * 120.00436 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0726 1.1971 5 6 2.7241 3.3757 1.1970 6 6 2.9545 4.0272 -0.0002 7 6 3.4569 5.4480 -0.0003 8 1 3.5784 5.7904 1.0274 9 6 2.4491 6.3452 -0.7216 10 6 4.7845 5.5114 -0.7107 11 8 5.0098 4.7680 -1.6420 12 7 5.7212 6.3941 -0.3110 13 6 7.0889 6.4913 -0.8417 14 6 7.8041 7.6204 -0.0701 15 6 6.9802 7.7215 1.2408 16 8 7.4000 6.7362 2.1868 17 6 7.0709 9.1054 1.8304 18 1 6.1784 9.7025 1.9463 19 6 8.2932 9.6093 2.2216 20 7 9.3799 8.8821 2.0807 21 14 8.4057 11.3251 2.9518 22 1 8.2451 11.2470 4.4260 23 1 9.7297 11.9147 2.6286 24 1 7.3317 12.1772 2.3812 25 6 5.5474 7.4270 0.7310 26 6 2.7186 3.3775 -1.1973 27 6 2.2623 2.0725 -1.1972 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.0831 1.5634 2.1324 34 1 2.9045 3.8847 2.1322 35 1 2.7892 7.3800 -0.6802 36 1 2.3636 6.0322 -1.7622 37 1 1.4766 6.2627 -0.2363 38 1 7.0579 6.7306 -1.9046 39 1 7.6134 5.5482 -0.6893 40 1 8.8373 7.3468 0.1438 41 1 7.7593 8.5564 -0.6269 42 1 8.3233 6.8222 2.4609 43 1 10.2398 9.2365 2.3563 44 1 4.9272 7.0451 1.5421 45 1 5.1032 8.3273 0.3065 46 1 2.8945 3.8880 -2.1326 47 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:25 Heat of formation + Delta-G solvation = -92.182030 kcal Electronic energy + Delta-G solvation = -26837.180561 eV Core-core repulsion = 23176.263528 eV Total energy + Delta-G solvation = -3660.917033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.49363 -40.21238 -38.91828 -36.05096 -35.93394 -34.18537 -33.59424 -31.83026 -31.43919 -30.06030 -29.36107 -26.96750 -25.94927 -24.56112 -23.64346 -22.98566 -21.73388 -21.45052 -20.02906 -19.02292 -18.27626 -17.29244 -16.95479 -16.76859 -16.63170 -16.27512 -16.02098 -15.55137 -15.29433 -14.80872 -14.71193 -14.54716 -14.40958 -14.17653 -14.01681 -13.82292 -13.64092 -13.33250 -13.23664 -13.18760 -13.02728 -12.81862 -12.64544 -12.53532 -12.42974 -12.28616 -12.21010 -12.01575 -11.88061 -11.66543 -11.62065 -11.27435 -10.77888 -10.58520 -10.13584 -9.76602 -9.61785 -9.40876 -8.20893 -6.36089 0.38310 0.54748 1.45160 1.48511 1.56341 1.60484 2.04723 2.41823 2.86862 3.04659 3.51333 3.63765 3.78643 3.90601 3.97376 4.12885 4.14473 4.15896 4.22504 4.27612 4.30411 4.40528 4.54389 4.59071 4.61670 4.66330 4.69298 4.74497 4.80026 4.87850 4.89039 5.08526 5.10610 5.14509 5.15603 5.18353 5.24514 5.30288 5.40879 5.43813 5.50809 5.54931 5.73805 5.75234 5.79193 6.08316 6.13981 6.57027 6.70519 7.13190 7.32565 7.40462 8.84960 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025955 B = 0.002812 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.511211 B = 9954.169293 C =10126.881288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.086 4.086 4 C -0.128 4.128 5 C -0.118 4.118 6 C -0.094 4.094 7 C -0.063 4.063 8 H 0.104 0.896 9 C -0.129 4.129 10 C 0.528 3.472 11 O -0.580 6.580 12 N -0.610 5.610 13 C 0.113 3.887 14 C -0.124 4.124 15 C 0.232 3.768 16 O -0.591 6.591 17 C -0.554 4.554 18 H 0.067 0.933 19 C 0.032 3.968 20 N -0.911 5.911 21 Si 0.960 3.040 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.267 1.267 25 C 0.120 3.880 26 C -0.094 4.094 27 C -0.133 4.133 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.376 0.624 43 H 0.269 0.731 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 -10.340 -2.802 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.146 4.146 5 C -0.136 4.136 6 C -0.095 4.095 7 C -0.084 4.084 8 H 0.122 0.878 9 C -0.186 4.186 10 C 0.318 3.682 11 O -0.461 6.461 12 N -0.341 5.341 13 C -0.010 4.010 14 C -0.163 4.163 15 C 0.192 3.808 16 O -0.400 6.400 17 C -0.592 4.592 18 H 0.085 0.915 19 C -0.169 4.169 20 N -0.551 5.551 21 Si 0.786 3.214 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.191 1.191 25 C -0.002 4.002 26 C -0.112 4.112 27 C -0.151 4.151 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.225 0.775 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.132 0.868 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.660 -10.973 -3.374 19.417 hybrid contribution 1.519 1.274 0.357 2.015 sum -14.140 -9.699 -3.017 17.410 Atomic orbital electron populations 1.21719 0.93818 1.02461 1.01968 1.20589 0.96847 0.91102 1.03514 1.20218 0.98293 0.97304 0.92793 1.21219 1.00365 0.94422 0.98549 1.21264 0.99386 0.95601 0.97357 1.19490 1.01182 0.94585 0.94208 1.20248 0.91522 0.95061 1.01567 0.87789 1.21696 0.98282 0.98368 1.00276 1.20710 0.85812 0.78324 0.83376 1.90607 1.81027 1.43541 1.30926 1.48751 1.12625 1.33838 1.38930 1.21903 0.82494 0.98976 0.97613 1.22987 0.99715 0.95853 0.97750 1.19825 0.89063 0.86538 0.85378 1.86108 1.33546 1.56255 1.64056 1.21691 0.94308 1.00287 1.42899 0.91504 1.25665 0.95261 1.01132 0.94831 1.69816 0.99095 1.38770 1.47374 0.85525 0.77411 0.79913 0.78563 1.20464 1.21159 1.19113 1.22498 0.98243 0.90206 0.89245 1.21079 0.97108 0.95341 0.97653 1.21216 1.00747 0.94527 0.98582 0.92702 0.92977 0.90977 0.90578 0.90175 0.84072 0.85042 0.91212 0.92389 0.89230 0.92028 0.93706 0.91364 0.91800 0.77462 0.92216 0.90315 0.89196 0.86808 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.90 71.98 0.71 -1.16 16 2 C -0.08 -1.31 6.06 29.85 0.18 -1.13 16 3 C -0.09 -1.90 5.13 -19.87 -0.10 -2.00 16 4 C -0.13 -2.89 9.70 22.27 0.22 -2.68 16 5 C -0.12 -3.07 9.67 22.27 0.22 -2.85 16 6 C -0.09 -2.75 4.71 -19.86 -0.09 -2.84 16 7 C -0.06 -1.86 2.52 -12.28 -0.03 -1.89 16 8 H 0.10 2.92 6.20 -2.39 -0.01 2.91 16 9 C -0.13 -3.07 8.94 71.98 0.64 -2.42 16 10 C 0.53 19.86 6.86 87.66 0.60 20.46 16 11 O -0.58 -24.86 14.94 -3.03 -0.05 -24.90 16 12 N -0.61 -23.88 3.34 -810.97 -2.71 -26.59 16 13 C 0.11 4.62 6.86 86.73 0.60 5.21 16 14 C -0.12 -5.48 5.38 31.79 0.17 -5.31 16 15 C 0.23 10.68 0.87 -10.15 -0.01 10.67 16 16 O -0.59 -29.25 13.16 -148.98 -1.96 -31.21 16 17 C -0.55 -27.17 8.27 25.60 0.21 -26.96 16 18 H 0.07 3.18 7.79 -2.91 -0.02 3.15 16 19 C 0.03 1.59 5.29 84.65 0.45 2.04 16 20 N -0.91 -46.27 10.76 21.45 0.23 -46.04 16 21 Si 0.96 39.67 29.54 68.60 2.03 41.70 16 22 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.29 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 C 0.12 4.66 5.93 86.79 0.51 5.17 16 26 C -0.09 -2.73 8.01 22.27 0.18 -2.56 16 27 C -0.13 -3.29 9.70 22.27 0.22 -3.08 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 32 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 33 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.13 3.04 7.95 -2.91 -0.02 3.02 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.43 7.47 -2.39 -0.02 1.41 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 3.23 7.55 -2.39 -0.02 3.21 16 41 H 0.06 2.82 8.03 -2.39 -0.02 2.80 16 42 H 0.38 19.07 7.56 -74.06 -0.56 18.51 16 43 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 44 H 0.08 2.88 6.65 -2.38 -0.02 2.87 16 45 H 0.09 3.21 8.03 -2.38 -0.02 3.20 16 46 H 0.11 3.54 6.74 -2.91 -0.02 3.52 16 47 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -58.85 378.41 2.61 -56.24 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: 0.40 Total: 42.11 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 4.67 Total: -11.31 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -2.48 Total: -72.63 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -2.01 Total: -56.11 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -58.85 2.61 -56.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.941 kcal (2) G-P(sol) polarization free energy of solvation -58.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds