Wall clock time and date at job start Tue Mar 31 2020 11:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47400 * 2 1 4 4 C 1.38233 * 120.00136 * 89.99849 * 3 2 1 5 5 C 1.38224 * 120.00257 * 180.02562 * 4 3 2 6 6 C 1.38245 * 119.99956 * 359.95329 * 5 4 3 7 7 C 1.50700 * 120.00078 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46908 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47232 * 240.00394 * 7 6 5 10 10 C 1.50694 * 109.47010 * 120.00102 * 7 6 5 11 11 O 1.21281 * 120.00021 * 94.53121 * 10 7 6 12 12 N 1.34779 * 120.00197 * 274.52861 * 10 7 6 13 13 C 1.47022 * 125.64773 * 354.81397 * 12 10 7 14 14 C 1.54325 * 107.27313 * 178.89333 * 13 12 10 15 15 C 1.55164 * 102.93917 * 337.80400 * 14 13 12 16 16 O 1.42895 * 111.00354 * 277.42989 * 15 14 13 17 17 C 1.50696 * 111.00190 * 153.61707 * 15 14 13 18 18 H 1.08003 * 119.99872 * 244.58394 * 17 15 14 19 19 C 1.37875 * 120.00553 * 64.58189 * 17 15 14 20 20 N 1.31513 * 119.99621 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00495 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46819 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47255 * 119.99788 * 21 19 17 24 24 H 1.48498 * 109.47240 * 240.00098 * 21 19 17 25 25 C 1.47423 * 125.64894 * 174.75378 * 12 10 7 26 26 C 1.38233 * 119.99729 * 0.28053 * 6 5 4 27 27 C 1.38231 * 119.99887 * 269.98043 * 3 2 1 28 28 H 1.09003 * 109.47216 * 60.00068 * 1 2 3 29 29 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47067 * 300.00036 * 1 2 3 31 31 H 1.09004 * 109.47067 * 239.99964 * 2 1 3 32 32 H 1.09001 * 109.47034 * 120.00446 * 2 1 3 33 33 H 1.08003 * 119.99579 * 359.97438 * 4 3 2 34 34 H 1.08007 * 120.00395 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.47378 * 64.90638 * 9 7 6 36 36 H 1.08995 * 109.46923 * 184.90831 * 9 7 6 37 37 H 1.09000 * 109.46464 * 304.90654 * 9 7 6 38 38 H 1.08997 * 109.88505 * 59.47248 * 13 12 10 39 39 H 1.09000 * 109.88275 * 298.30898 * 13 12 10 40 40 H 1.08999 * 110.71778 * 219.44700 * 14 13 12 41 41 H 1.08999 * 110.87293 * 96.23862 * 14 13 12 42 42 H 0.96708 * 113.99838 * 298.54087 * 16 15 14 43 43 H 0.96998 * 120.00282 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.36702 * 85.34374 * 25 12 10 45 45 H 1.08996 * 110.37008 * 323.01781 * 25 12 10 46 46 H 1.08004 * 119.99511 * 179.72902 * 26 6 5 47 47 H 1.08001 * 120.00486 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7231 3.3758 1.1971 6 6 2.9540 4.0273 -0.0001 7 6 3.4564 5.4481 -0.0001 8 1 3.5775 5.7906 1.0276 9 6 2.4489 6.3454 -0.7217 10 6 4.7841 5.5114 -0.7100 11 8 4.8286 5.7930 -1.8888 12 7 5.9221 5.2551 -0.0350 13 6 6.0238 5.0084 1.4109 14 6 7.5098 4.7361 1.7260 15 6 8.0789 4.2859 0.3545 16 8 7.8188 2.9002 0.1219 17 6 9.5540 4.5791 0.2593 18 1 9.9173 5.2914 -0.4667 19 6 10.4399 3.9380 1.0991 20 7 9.9975 3.0711 1.9835 21 14 12.2684 4.3019 0.9817 22 1 12.5054 5.3071 -0.0855 23 1 12.7514 4.8351 2.2807 24 1 13.0018 3.0525 0.6558 25 6 7.2711 5.1744 -0.6242 26 6 2.7190 3.3773 -1.1972 27 6 2.2632 2.0722 -1.1971 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0823 1.5634 2.1324 34 1 2.9027 3.8851 2.1325 35 1 1.5150 6.3682 -0.1600 36 1 2.8515 7.3553 -0.7985 37 1 2.2623 5.9517 -1.7209 38 1 5.4223 4.1408 1.6821 39 1 5.6828 5.8852 1.9614 40 1 7.6078 3.9402 2.4642 41 1 8.0062 5.6432 2.0705 42 1 8.2252 2.3095 0.7708 43 1 10.6207 2.6198 2.5741 44 1 7.7161 6.1672 -0.6906 45 1 7.2275 4.7106 -1.6097 46 1 2.8952 3.8878 -2.1325 47 1 2.0838 1.5629 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840176.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:31 Heat of formation + Delta-G solvation = -78.861943 kcal Electronic energy + Delta-G solvation = -27303.882066 eV Core-core repulsion = 23643.542636 eV Total energy + Delta-G solvation = -3660.339431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.16842 -38.93714 -37.31932 -35.00035 -34.25929 -32.46321 -32.18773 -30.85109 -29.75255 -28.53202 -28.31852 -25.63097 -24.40638 -23.10385 -22.73403 -21.81796 -20.63182 -19.65990 -18.53288 -17.25766 -16.81477 -16.40519 -15.48030 -15.19185 -14.96254 -14.92932 -14.73889 -14.19539 -13.93265 -13.76843 -13.57235 -13.39475 -13.09672 -12.97527 -12.51530 -12.45166 -12.33089 -12.03948 -11.76498 -11.64609 -11.59547 -11.42014 -11.33735 -11.30104 -11.12871 -10.90748 -10.77166 -10.68516 -10.61666 -10.45227 -10.03181 -9.46869 -9.35907 -8.80374 -8.68926 -8.38119 -8.20422 -7.96079 -6.29631 -4.36888 1.37466 1.51950 3.07034 3.18077 3.27260 3.31711 3.56625 3.85027 4.26313 4.67515 4.76450 4.85742 4.90926 4.99569 5.06286 5.09539 5.23146 5.26663 5.37917 5.43972 5.55011 5.55911 5.59521 5.71208 5.75123 5.81004 5.85480 5.89459 5.92747 6.01319 6.02906 6.13546 6.16637 6.24161 6.29899 6.44051 6.50963 6.65495 6.68393 6.70912 6.88712 6.97534 7.09046 7.28269 7.32436 7.72987 8.01623 8.16379 8.63523 8.67646 9.31401 9.42864 10.78250 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.003680 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.141553 B = 7606.432815 C = 8645.219074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.073 4.073 7 C -0.068 4.068 8 H 0.093 0.907 9 C -0.127 4.127 10 C 0.532 3.468 11 O -0.554 6.554 12 N -0.603 5.603 13 C 0.099 3.901 14 C -0.138 4.138 15 C 0.249 3.751 16 O -0.581 6.581 17 C -0.534 4.534 18 H 0.065 0.935 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.902 3.098 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.120 3.880 26 C -0.100 4.100 27 C -0.116 4.116 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.381 0.619 43 H 0.267 0.733 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.125 0.875 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.771 -1.452 1.636 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.124 4.124 6 C -0.074 4.074 7 C -0.089 4.089 8 H 0.112 0.888 9 C -0.185 4.185 10 C 0.320 3.680 11 O -0.433 6.433 12 N -0.334 5.334 13 C -0.024 4.024 14 C -0.177 4.177 15 C 0.209 3.791 16 O -0.390 6.390 17 C -0.572 4.572 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.002 4.002 26 C -0.118 4.118 27 C -0.134 4.134 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.232 0.768 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.143 0.857 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.081 -1.158 0.612 17.132 hybrid contribution 1.485 -0.079 0.720 1.653 sum -15.596 -1.237 1.333 15.702 Atomic orbital electron populations 1.21741 0.94905 1.01469 1.02121 1.20533 0.95947 0.92862 1.02900 1.19865 0.99268 0.96068 0.93261 1.20926 1.00410 0.94701 0.97433 1.20999 0.99347 0.94904 0.97168 1.19394 0.99913 0.94389 0.93665 1.20260 0.93378 0.93894 1.01370 0.88838 1.21632 0.97224 0.98818 1.00810 1.19963 0.84380 0.76892 0.86790 1.90638 1.87005 1.49639 1.15983 1.48584 1.07282 1.68046 1.09513 1.22192 1.00644 0.99052 0.80530 1.23193 0.90439 1.02215 1.01823 1.19595 0.91862 0.79784 0.87887 1.86143 1.77788 1.17838 1.57244 1.21497 0.91086 1.25168 1.19445 0.91694 1.24979 0.99551 0.94248 0.94192 1.69665 1.35342 1.27291 1.21258 0.86367 0.84237 0.78373 0.78029 1.19578 1.20842 1.20776 1.22371 0.80118 0.99386 0.98279 1.21071 0.98029 0.94729 0.98000 1.20964 1.00243 0.94676 0.97477 0.92634 0.92574 0.92624 0.91083 0.91044 0.86187 0.86048 0.92094 0.92049 0.91450 0.92263 0.92987 0.89749 0.91373 0.76820 0.92267 0.91150 0.91302 0.85702 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.09 -0.82 6.06 -27.88 -0.17 -0.99 16 3 C -0.08 -1.04 5.13 -104.63 -0.54 -1.58 16 4 C -0.12 -1.44 9.70 -39.59 -0.38 -1.82 16 5 C -0.11 -1.39 9.44 -39.58 -0.37 -1.76 16 6 C -0.07 -1.07 4.77 -104.62 -0.50 -1.56 16 7 C -0.07 -0.99 2.46 -92.93 -0.23 -1.22 16 8 H 0.09 1.21 7.03 -51.93 -0.37 0.84 16 9 C -0.13 -1.62 8.53 37.16 0.32 -1.31 16 10 C 0.53 10.16 6.58 -10.99 -0.07 10.09 16 11 O -0.55 -12.11 16.50 5.56 0.09 -12.02 16 12 N -0.60 -12.12 3.33 -170.52 -0.57 -12.69 16 13 C 0.10 1.79 6.09 -3.06 -0.02 1.78 16 14 C -0.14 -2.95 5.51 -24.89 -0.14 -3.08 16 15 C 0.25 6.03 0.87 -89.62 -0.08 5.95 16 16 O -0.58 -14.98 13.15 -35.23 -0.46 -15.44 16 17 C -0.53 -13.90 8.25 -34.44 -0.28 -14.18 16 18 H 0.06 1.70 7.78 -52.48 -0.41 1.29 16 19 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 20 N -0.90 -22.96 10.78 55.43 0.60 -22.36 16 21 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.12 2.73 6.06 -2.53 -0.02 2.71 16 26 C -0.10 -1.50 8.77 -39.58 -0.35 -1.84 16 27 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.12 1.35 7.95 -52.48 -0.42 0.94 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.91 7.10 -51.93 -0.37 0.54 16 38 H 0.06 1.04 7.91 -51.93 -0.41 0.63 16 39 H 0.05 0.80 8.01 -51.93 -0.42 0.39 16 40 H 0.08 1.88 7.68 -51.93 -0.40 1.48 16 41 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 42 H 0.38 9.82 7.32 45.56 0.33 10.16 16 43 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 44 H 0.07 1.55 8.03 -51.93 -0.42 1.14 16 45 H 0.07 1.68 8.09 -51.93 -0.42 1.26 16 46 H 0.13 1.94 7.53 -52.48 -0.40 1.54 16 47 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -29.01 381.51 -9.59 -38.59 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -7.03 Total: 12.82 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.94 Total: -9.80 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.03 Total: -35.05 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.37 Total: -27.46 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.01 -9.59 -38.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840176.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.270 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds