Wall clock time and date at job start Tue Mar 31 2020 13:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53010 * 109.46917 * 2 1 4 4 C 1.53002 * 109.47478 * 240.00323 * 2 1 3 5 5 C 1.50701 * 109.47389 * 119.99629 * 2 1 3 6 6 C 1.38364 * 119.85106 * 60.00262 * 5 2 1 7 7 C 1.37951 * 120.14527 * 180.02562 * 6 5 2 8 8 C 1.39580 * 119.85246 * 359.97438 * 7 6 5 9 9 C 1.47843 * 120.14171 * 179.97438 * 8 7 6 10 10 O 1.21550 * 120.00718 * 7.12997 * 9 8 7 11 11 N 1.34782 * 119.99585 * 186.86094 * 9 8 7 12 12 C 1.47424 * 125.64568 * 174.32601 * 11 9 8 13 13 C 1.55129 * 104.72230 * 155.81332 * 12 11 9 14 14 C 1.55156 * 101.48606 * 37.29268 * 13 12 11 15 15 O 1.42904 * 110.71633 * 82.69539 * 14 13 12 16 16 C 1.50702 * 110.72356 * 205.96754 * 14 13 12 17 17 H 1.08003 * 119.99866 * 354.97910 * 16 14 13 18 18 C 1.37877 * 119.99990 * 174.97618 * 16 14 13 19 19 N 1.31520 * 119.99949 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99971 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47116 * 59.99878 * 20 18 16 22 22 H 1.48494 * 109.47042 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46998 * 299.99894 * 20 18 16 24 24 C 1.47020 * 125.65061 * 354.62972 * 11 9 8 25 25 C 1.39571 * 119.71159 * 0.24922 * 8 7 6 26 26 C 1.37960 * 119.85289 * 359.49753 * 25 8 7 27 27 H 1.08992 * 109.47403 * 299.99878 * 1 2 3 28 28 H 1.08999 * 109.46996 * 60.00400 * 1 2 3 29 29 H 1.09005 * 109.46336 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47257 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46916 * 300.00177 * 3 2 1 32 32 H 1.09000 * 109.46797 * 59.99573 * 3 2 1 33 33 H 1.09006 * 109.46642 * 299.99527 * 4 2 1 34 34 H 1.08999 * 109.47166 * 59.99326 * 4 2 1 35 35 H 1.08992 * 109.47062 * 179.97438 * 4 2 1 36 36 H 1.08001 * 119.92270 * 0.02562 * 6 5 2 37 37 H 1.07996 * 120.07644 * 180.02562 * 7 6 5 38 38 H 1.08995 * 110.36989 * 274.74316 * 12 11 9 39 39 H 1.09007 * 110.36835 * 37.07007 * 12 11 9 40 40 H 1.09003 * 111.19624 * 279.19015 * 13 12 11 41 41 H 1.08996 * 110.94243 * 155.29130 * 13 12 11 42 42 H 0.96700 * 113.99611 * 185.02603 * 15 14 13 43 43 H 0.97002 * 119.99985 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.88029 * 300.44106 * 24 11 9 45 45 H 1.08998 * 109.88449 * 61.45278 * 24 11 9 46 46 H 1.07998 * 120.07657 * 179.73014 * 25 8 7 47 47 H 1.07997 * 119.92996 * 180.25176 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 6 1.6964 -2.0350 1.4465 7 6 2.1525 -2.6910 2.5711 8 6 2.9551 -2.0155 3.4918 9 6 3.4470 -2.7121 4.6995 10 8 3.2632 -3.9066 4.8295 11 7 4.1040 -2.0237 5.6539 12 6 4.5427 -2.5627 6.9541 13 6 5.7256 -1.6535 7.3789 14 6 5.2437 -0.2659 6.8793 15 8 4.3570 0.3326 7.8268 16 6 6.4173 0.6375 6.6005 17 1 7.4193 0.3086 6.8335 18 6 6.2118 1.8839 6.0480 19 7 4.9916 2.2846 5.7647 20 14 7.6665 3.0035 5.7018 21 1 8.5889 2.3361 4.7484 22 1 7.1815 4.2773 5.1126 23 1 8.3855 3.2872 6.9698 24 6 4.4965 -0.6091 5.5734 25 6 3.2865 -0.6779 3.2703 26 6 2.8281 -0.0351 2.1389 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 3.1299 1.4427 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7207 -1.2494 36 1 1.0756 -2.5566 0.7330 37 1 1.8898 -3.7251 2.7383 38 1 3.7340 -2.5019 7.6823 39 1 4.8781 -3.5940 6.8435 40 1 6.6488 -1.9492 6.8805 41 1 5.8504 -1.6572 8.4617 42 1 3.9671 1.1658 7.5287 43 1 4.8470 3.1617 5.3764 44 1 5.1547 -0.4551 4.7183 45 1 3.6095 0.0167 5.4756 46 1 3.9036 -0.1484 3.9810 47 1 3.0872 0.9986 1.9643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:35 Heat of formation + Delta-G solvation = -52.226213 kcal Electronic energy + Delta-G solvation = -27531.991693 eV Core-core repulsion = 23872.807274 eV Total energy + Delta-G solvation = -3659.184419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.23389 -39.01867 -37.31728 -35.97005 -34.27990 -32.36283 -31.37893 -30.59361 -29.34666 -27.95253 -27.35972 -27.31536 -25.46830 -24.00035 -22.11745 -22.04990 -19.83376 -19.43371 -19.09890 -17.32531 -16.73481 -16.23537 -15.53356 -15.18857 -14.96095 -14.67784 -14.46182 -14.32641 -13.96859 -13.58577 -13.47086 -13.15284 -13.04929 -12.84020 -12.75720 -12.62150 -12.13896 -11.94533 -11.82354 -11.75020 -11.69937 -11.62265 -11.27851 -11.07640 -11.01606 -10.84562 -10.66160 -10.63994 -10.56663 -10.32901 -10.15538 -9.50945 -9.30206 -8.77108 -8.69051 -8.50471 -8.33797 -7.93118 -6.40650 -4.48624 1.17076 1.67115 3.15276 3.20946 3.23983 3.26830 3.60727 4.17743 4.19012 4.53082 4.69049 4.86466 4.92154 5.04410 5.19740 5.23198 5.25706 5.47679 5.49427 5.51573 5.66344 5.67368 5.71051 5.72899 5.77383 5.80588 5.85232 5.90274 5.95814 6.01312 6.13999 6.19025 6.20180 6.21262 6.29283 6.37781 6.57604 6.62734 6.70037 6.72144 6.81677 6.90930 6.98280 7.19289 7.22951 7.61917 7.89283 8.17714 8.54512 8.69096 9.19160 9.28119 10.67042 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011715 B = 0.004721 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.509706 B = 5929.124042 C = 7764.647941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.032 4.032 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.054 4.054 6 C -0.134 4.134 7 C -0.064 4.064 8 C -0.134 4.134 9 C 0.566 3.434 10 O -0.564 6.564 11 N -0.606 5.606 12 C 0.109 3.891 13 C -0.119 4.119 14 C 0.247 3.753 15 O -0.582 6.582 16 C -0.536 4.536 17 H 0.067 0.933 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.902 3.098 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.084 3.916 25 C -0.114 4.114 26 C -0.128 4.128 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.381 0.619 43 H 0.271 0.729 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.180 0.820 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -1.823 -10.708 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.195 4.195 5 C -0.055 4.055 6 C -0.152 4.152 7 C -0.083 4.083 8 C -0.137 4.137 9 C 0.356 3.644 10 O -0.445 6.445 11 N -0.337 5.337 12 C -0.014 4.014 13 C -0.157 4.157 14 C 0.206 3.794 15 O -0.390 6.390 16 C -0.574 4.574 17 H 0.085 0.915 18 C -0.131 4.131 19 N -0.538 5.538 20 Si 0.729 3.271 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.038 4.038 25 C -0.131 4.131 26 C -0.146 4.146 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.231 0.769 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.196 0.804 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.371 -2.849 -10.406 12.530 hybrid contribution 0.536 1.251 -0.641 1.505 sum -5.835 -1.598 -11.047 12.595 Atomic orbital electron populations 1.21885 0.93732 1.02008 1.01868 1.19538 0.95672 0.95215 0.92737 1.21980 1.01499 0.94818 1.01973 1.21886 1.01397 1.00123 0.96085 1.20017 0.96263 0.93894 0.95306 1.20810 1.02045 0.94437 0.97952 1.21159 0.94766 0.99793 0.92532 1.19932 1.02351 0.95008 0.96367 1.18018 0.77915 0.86027 0.82436 1.90683 1.59655 1.14573 1.79607 1.48636 1.54884 1.13597 1.16617 1.22270 0.97175 0.97727 0.84180 1.22818 0.96402 0.95089 1.01356 1.19542 0.87239 0.89265 0.83312 1.86156 1.64516 1.42214 1.46149 1.21517 0.93371 1.00455 1.42080 0.91468 1.25038 0.96386 0.97723 0.93922 1.69671 1.19921 1.20889 1.43288 0.86477 0.82239 0.79540 0.78825 1.20004 1.21029 1.19948 1.23519 0.99422 0.78481 1.02365 1.23322 0.97659 0.93955 0.98172 1.21228 0.98570 1.00562 0.94239 0.92348 0.92463 0.92458 0.92042 0.92539 0.91948 0.92447 0.92464 0.92399 0.86092 0.85292 0.91727 0.91467 0.90404 0.90416 0.76863 0.91865 0.90402 0.90383 0.80393 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.29 37.16 0.31 -1.00 16 2 C -0.03 -0.34 0.85 -155.65 -0.13 -0.47 16 3 C -0.15 -1.48 7.13 37.16 0.26 -1.22 16 4 C -0.14 -1.30 8.29 37.16 0.31 -0.99 16 5 C -0.05 -0.73 4.77 -104.53 -0.50 -1.23 16 6 C -0.13 -1.83 8.69 -39.64 -0.34 -2.18 16 7 C -0.06 -1.03 9.59 -39.19 -0.38 -1.40 16 8 C -0.13 -2.48 5.87 -104.97 -0.62 -3.10 16 9 C 0.57 11.88 7.81 -12.33 -0.10 11.78 16 10 O -0.56 -12.85 16.60 5.32 0.09 -12.77 16 11 N -0.61 -12.61 3.32 -175.84 -0.58 -13.20 16 12 C 0.11 2.13 6.94 -2.41 -0.02 2.11 16 13 C -0.12 -2.38 6.24 -24.46 -0.15 -2.53 16 14 C 0.25 5.62 0.85 -89.94 -0.08 5.55 16 15 O -0.58 -13.88 13.08 -35.23 -0.46 -14.35 16 16 C -0.54 -13.11 8.12 -34.44 -0.28 -13.39 16 17 H 0.07 1.64 7.78 -52.48 -0.41 1.23 16 18 C 0.07 1.73 5.28 -17.82 -0.09 1.64 16 19 N -0.90 -21.41 10.98 55.43 0.61 -20.80 16 20 Si 0.90 19.15 29.54 -169.99 -5.02 14.13 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 C 0.08 1.80 3.23 -3.07 -0.01 1.79 16 25 C -0.11 -2.03 8.61 -39.19 -0.34 -2.37 16 26 C -0.13 -1.97 8.96 -39.64 -0.36 -2.33 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.52 7.38 -51.93 -0.38 0.13 16 30 H 0.06 0.65 7.50 -51.93 -0.39 0.26 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16 33 H 0.06 0.52 7.37 -51.93 -0.38 0.13 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.12 1.34 7.08 -52.49 -0.37 0.97 16 37 H 0.13 2.03 7.67 -52.49 -0.40 1.62 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.25 7.98 -51.92 -0.41 0.84 16 40 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.38 9.12 7.47 45.56 0.34 9.46 16 43 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 44 H 0.08 1.74 6.41 -51.93 -0.33 1.40 16 45 H 0.08 1.73 6.51 -51.93 -0.34 1.40 16 46 H 0.18 3.48 2.74 -58.12 -0.16 3.32 16 47 H 0.13 1.85 5.87 -52.49 -0.31 1.54 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -26.62 366.97 -8.80 -35.41 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -6.45 Total: 15.38 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.51 Total: -9.34 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.02 Total: -33.99 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.37 Total: -27.11 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.62 -8.80 -35.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.812 kcal (2) G-P(sol) polarization free energy of solvation -26.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds