Wall clock time and date at job start Tue Mar 31 2020 13:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53010 * 109.46917 * 2 1 4 4 C 1.53002 * 109.47478 * 240.00323 * 2 1 3 5 5 C 1.50701 * 109.47389 * 119.99629 * 2 1 3 6 6 C 1.38364 * 119.85106 * 60.00262 * 5 2 1 7 7 C 1.37951 * 120.14527 * 180.02562 * 6 5 2 8 8 C 1.39580 * 119.85246 * 359.97438 * 7 6 5 9 9 C 1.47843 * 120.14171 * 179.97438 * 8 7 6 10 10 O 1.21550 * 120.00718 * 7.12997 * 9 8 7 11 11 N 1.34782 * 119.99585 * 186.86094 * 9 8 7 12 12 C 1.47424 * 125.64568 * 174.32601 * 11 9 8 13 13 C 1.55129 * 104.72230 * 155.81332 * 12 11 9 14 14 C 1.55156 * 101.48606 * 37.29268 * 13 12 11 15 15 O 1.42904 * 110.71633 * 82.69539 * 14 13 12 16 16 C 1.50702 * 110.72356 * 205.96754 * 14 13 12 17 17 H 1.08003 * 119.99866 * 354.97910 * 16 14 13 18 18 C 1.37877 * 119.99990 * 174.97618 * 16 14 13 19 19 N 1.31520 * 119.99949 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99971 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47116 * 59.99878 * 20 18 16 22 22 H 1.48494 * 109.47042 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46998 * 299.99894 * 20 18 16 24 24 C 1.47020 * 125.65061 * 354.62972 * 11 9 8 25 25 C 1.39571 * 119.71159 * 0.24922 * 8 7 6 26 26 C 1.37960 * 119.85289 * 359.49753 * 25 8 7 27 27 H 1.08992 * 109.47403 * 299.99878 * 1 2 3 28 28 H 1.08999 * 109.46996 * 60.00400 * 1 2 3 29 29 H 1.09005 * 109.46336 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47257 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46916 * 300.00177 * 3 2 1 32 32 H 1.09000 * 109.46797 * 59.99573 * 3 2 1 33 33 H 1.09006 * 109.46642 * 299.99527 * 4 2 1 34 34 H 1.08999 * 109.47166 * 59.99326 * 4 2 1 35 35 H 1.08992 * 109.47062 * 179.97438 * 4 2 1 36 36 H 1.08001 * 119.92270 * 0.02562 * 6 5 2 37 37 H 1.07996 * 120.07644 * 180.02562 * 7 6 5 38 38 H 1.08995 * 110.36989 * 274.74316 * 12 11 9 39 39 H 1.09007 * 110.36835 * 37.07007 * 12 11 9 40 40 H 1.09003 * 111.19624 * 279.19015 * 13 12 11 41 41 H 1.08996 * 110.94243 * 155.29130 * 13 12 11 42 42 H 0.96700 * 113.99611 * 185.02603 * 15 14 13 43 43 H 0.97002 * 119.99985 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.88029 * 300.44106 * 24 11 9 45 45 H 1.08998 * 109.88449 * 61.45278 * 24 11 9 46 46 H 1.07998 * 120.07657 * 179.73014 * 25 8 7 47 47 H 1.07997 * 119.92996 * 180.25176 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 6 1.6964 -2.0350 1.4465 7 6 2.1525 -2.6910 2.5711 8 6 2.9551 -2.0155 3.4918 9 6 3.4470 -2.7121 4.6995 10 8 3.2632 -3.9066 4.8295 11 7 4.1040 -2.0237 5.6539 12 6 4.5427 -2.5627 6.9541 13 6 5.7256 -1.6535 7.3789 14 6 5.2437 -0.2659 6.8793 15 8 4.3570 0.3326 7.8268 16 6 6.4173 0.6375 6.6005 17 1 7.4193 0.3086 6.8335 18 6 6.2118 1.8839 6.0480 19 7 4.9916 2.2846 5.7647 20 14 7.6665 3.0035 5.7018 21 1 8.5889 2.3361 4.7484 22 1 7.1815 4.2773 5.1126 23 1 8.3855 3.2872 6.9698 24 6 4.4965 -0.6091 5.5734 25 6 3.2865 -0.6779 3.2703 26 6 2.8281 -0.0351 2.1389 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 3.1299 1.4427 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7207 -1.2494 36 1 1.0756 -2.5566 0.7330 37 1 1.8898 -3.7251 2.7383 38 1 3.7340 -2.5019 7.6823 39 1 4.8781 -3.5940 6.8435 40 1 6.6488 -1.9492 6.8805 41 1 5.8504 -1.6572 8.4617 42 1 3.9671 1.1658 7.5287 43 1 4.8470 3.1617 5.3764 44 1 5.1547 -0.4551 4.7183 45 1 3.6095 0.0167 5.4756 46 1 3.9036 -0.1484 3.9810 47 1 3.0872 0.9986 1.9643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:34 Heat of formation + Delta-G solvation = -66.551894 kcal Electronic energy + Delta-G solvation = -27532.612901 eV Core-core repulsion = 23872.807274 eV Total energy + Delta-G solvation = -3659.805627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67788 -40.33756 -38.99955 -37.07625 -36.05691 -34.23186 -32.79484 -31.91068 -30.81278 -29.56301 -28.21024 -28.07115 -27.22393 -25.46499 -23.50750 -23.36168 -21.51689 -20.90549 -20.21107 -19.10797 -18.24667 -17.79039 -16.97498 -16.70288 -16.51054 -16.23557 -15.76993 -15.35689 -15.16889 -14.96535 -14.83973 -14.74979 -14.46926 -14.33871 -13.99861 -13.61175 -13.51585 -13.47705 -13.26447 -12.90008 -12.84830 -12.75140 -12.52798 -12.51250 -12.36101 -12.31847 -12.17426 -12.05203 -11.83038 -11.65892 -11.40358 -11.14551 -11.02621 -10.60870 -10.15996 -9.96229 -9.80422 -9.54763 -8.24526 -6.39003 -0.14808 0.42556 1.45273 1.48072 1.53922 1.77934 2.01612 2.40712 2.85070 3.01162 3.44488 3.65518 3.75412 3.85444 3.97276 4.03699 4.12163 4.14319 4.15923 4.28079 4.36667 4.44915 4.52314 4.56388 4.69075 4.81199 4.81869 4.84141 4.88655 4.92408 5.00712 5.05104 5.05224 5.07473 5.10177 5.22244 5.25319 5.25528 5.34649 5.41801 5.46867 5.48696 5.49839 5.65929 5.75271 5.96077 6.05690 6.50824 6.65692 7.04533 7.30308 7.38342 8.81720 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011715 B = 0.004721 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.509706 B = 5929.124042 C = 7764.647941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.031 4.031 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.042 4.042 6 C -0.124 4.124 7 C -0.067 4.067 8 C -0.161 4.161 9 C 0.561 3.439 10 O -0.588 6.588 11 N -0.611 5.611 12 C 0.109 3.891 13 C -0.112 4.112 14 C 0.232 3.768 15 O -0.588 6.588 16 C -0.560 4.560 17 H 0.062 0.938 18 C 0.040 3.960 19 N -0.906 5.906 20 Si 0.955 3.045 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.277 1.277 24 C 0.109 3.891 25 C -0.126 4.126 26 C -0.135 4.135 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.156 0.844 37 H 0.132 0.868 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.377 0.623 43 H 0.274 0.726 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.158 0.842 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.090 -1.530 -12.935 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.031 4.031 3 C -0.204 4.204 4 C -0.194 4.194 5 C -0.042 4.042 6 C -0.142 4.142 7 C -0.086 4.086 8 C -0.164 4.164 9 C 0.352 3.648 10 O -0.471 6.471 11 N -0.342 5.342 12 C -0.013 4.013 13 C -0.150 4.150 14 C 0.192 3.808 15 O -0.397 6.397 16 C -0.598 4.598 17 H 0.080 0.920 18 C -0.162 4.162 19 N -0.545 5.545 20 Si 0.781 3.219 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.202 1.202 24 C -0.013 4.013 25 C -0.144 4.144 26 C -0.153 4.153 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.173 0.827 37 H 0.150 0.850 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.227 0.773 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.174 0.826 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.156 -2.554 -12.627 14.737 hybrid contribution 0.733 1.192 -0.008 1.400 sum -6.423 -1.362 -12.635 14.239 Atomic orbital electron populations 1.21891 0.92376 1.02706 1.02410 1.19640 0.96631 0.95144 0.91701 1.21995 1.01082 0.94763 1.02579 1.21890 1.00858 1.00646 0.95969 1.20413 0.94297 0.93878 0.95603 1.21148 1.01273 0.94419 0.97321 1.21304 0.94416 1.00009 0.92876 1.19881 1.04506 0.95470 0.96494 1.18481 0.77382 0.85896 0.82992 1.90647 1.60720 1.15464 1.80299 1.48716 1.55035 1.13341 1.17106 1.22310 0.97020 0.98140 0.83800 1.22793 0.96691 0.93519 1.01994 1.19745 0.86974 0.90204 0.83883 1.86146 1.64735 1.42072 1.46716 1.21711 0.93622 1.01424 1.43083 0.92004 1.25597 0.98361 0.98609 0.93648 1.69735 1.20827 1.21052 1.42887 0.85655 0.79791 0.78116 0.78353 1.19915 1.20528 1.20229 1.23139 0.98339 0.78684 1.01177 1.23085 0.98419 0.93878 0.99000 1.21369 0.98940 1.01043 0.93912 0.93358 0.90471 0.91707 0.92774 0.90526 0.92806 0.91706 0.90481 0.93317 0.82670 0.85037 0.91664 0.90391 0.89842 0.89449 0.77306 0.91679 0.91673 0.91605 0.82554 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.29 71.98 0.60 -1.52 16 2 C -0.03 -0.57 0.85 -52.92 -0.05 -0.61 16 3 C -0.15 -2.66 7.13 71.99 0.51 -2.14 16 4 C -0.14 -2.09 8.29 71.98 0.60 -1.49 16 5 C -0.04 -1.04 4.77 -19.81 -0.09 -1.13 16 6 C -0.12 -3.10 8.69 22.23 0.19 -2.90 16 7 C -0.07 -2.12 9.59 22.53 0.22 -1.91 16 8 C -0.16 -6.07 5.87 -20.09 -0.12 -6.19 16 9 C 0.56 24.09 7.81 86.78 0.68 24.77 16 10 O -0.59 -27.22 16.60 -3.87 -0.06 -27.28 16 11 N -0.61 -26.08 3.32 -828.51 -2.75 -28.84 16 12 C 0.11 4.32 6.94 86.93 0.60 4.92 16 13 C -0.11 -4.52 6.24 32.06 0.20 -4.32 16 14 C 0.23 10.77 0.85 -10.35 -0.01 10.77 16 15 O -0.59 -28.63 13.08 -148.98 -1.95 -30.58 16 16 C -0.56 -27.78 8.12 25.60 0.21 -27.57 16 17 H 0.06 3.06 7.78 -2.91 -0.02 3.03 16 18 C 0.04 1.92 5.28 84.65 0.45 2.37 16 19 N -0.91 -43.65 10.98 21.45 0.24 -43.41 16 20 Si 0.95 39.17 29.54 68.60 2.03 41.20 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 24 C 0.11 4.82 3.23 86.73 0.28 5.10 16 25 C -0.13 -4.62 8.61 22.53 0.19 -4.43 16 26 C -0.13 -4.10 8.96 22.23 0.20 -3.90 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.91 7.38 -2.38 -0.02 0.89 16 30 H 0.05 1.05 7.50 -2.39 -0.02 1.03 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.06 7.51 -2.39 -0.02 1.04 16 33 H 0.06 0.90 7.37 -2.38 -0.02 0.89 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.16 2.82 7.08 -2.91 -0.02 2.80 16 37 H 0.13 4.04 7.67 -2.91 -0.02 4.02 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.08 2.90 7.98 -2.38 -0.02 2.88 16 40 H 0.08 3.23 8.04 -2.39 -0.02 3.22 16 41 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.38 18.55 7.47 -74.06 -0.55 18.00 16 43 H 0.27 12.61 8.31 -92.71 -0.77 11.84 16 44 H 0.07 3.04 6.41 -2.39 -0.02 3.03 16 45 H 0.07 3.06 6.51 -2.39 -0.02 3.05 16 46 H 0.16 6.41 2.74 -8.20 -0.02 6.38 16 47 H 0.14 3.90 5.87 -2.91 -0.02 3.88 16 Total: -1.00 -57.03 366.97 2.57 -54.46 By element: Atomic # 1 Polarization: 44.23 SS G_CDS: 0.42 Total: 44.65 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 4.66 Total: -10.19 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -2.52 Total: -72.25 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -2.01 Total: -57.86 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -57.03 2.57 -54.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.095 kcal (2) G-P(sol) polarization free energy of solvation -57.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds