Wall clock time and date at job start Tue Mar 31 2020 13:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47148 * 2 1 4 4 C 1.53004 * 109.47168 * 240.00245 * 2 1 3 5 5 C 1.50700 * 109.47363 * 119.99914 * 2 1 3 6 6 C 1.38363 * 119.84939 * 60.00428 * 5 2 1 7 7 C 1.37956 * 120.14088 * 180.02562 * 6 5 2 8 8 C 1.39574 * 119.85351 * 359.97012 * 7 6 5 9 9 C 1.47851 * 120.14250 * 179.97438 * 8 7 6 10 10 O 1.21554 * 120.00018 * 335.55108 * 9 8 7 11 11 N 1.34776 * 119.99856 * 155.54803 * 9 8 7 12 12 C 1.47472 * 125.63030 * 354.23006 * 11 9 8 13 13 C 1.54906 * 104.81188 * 204.04692 * 12 11 9 14 14 C 1.55155 * 101.61654 * 323.04739 * 13 12 11 15 15 O 1.42903 * 110.71943 * 277.11483 * 14 13 12 16 16 C 1.50705 * 110.72109 * 154.02294 * 14 13 12 17 17 H 1.07998 * 119.99658 * 0.02562 * 16 14 13 18 18 C 1.37875 * 119.99857 * 179.97438 * 16 14 13 19 19 N 1.31513 * 120.00399 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99836 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47243 * 59.99583 * 20 18 16 22 22 H 1.48503 * 109.47443 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47382 * 300.00078 * 20 18 16 24 24 C 1.47026 * 125.64597 * 174.20826 * 11 9 8 25 25 C 1.39575 * 119.71291 * 0.25760 * 8 7 6 26 26 C 1.37957 * 119.85035 * 359.51282 * 25 8 7 27 27 H 1.08998 * 109.46611 * 299.99766 * 1 2 3 28 28 H 1.09001 * 109.47250 * 59.99906 * 1 2 3 29 29 H 1.09001 * 109.46527 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47506 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47122 * 300.00173 * 3 2 1 32 32 H 1.09000 * 109.46787 * 59.99712 * 3 2 1 33 33 H 1.08997 * 109.46988 * 300.00077 * 4 2 1 34 34 H 1.09001 * 109.47158 * 59.99793 * 4 2 1 35 35 H 1.08999 * 109.46980 * 179.97438 * 4 2 1 36 36 H 1.07995 * 119.93023 * 0.02562 * 6 5 2 37 37 H 1.08009 * 120.07262 * 179.97438 * 7 6 5 38 38 H 1.09002 * 110.34139 * 85.22914 * 12 11 9 39 39 H 1.08993 * 110.40525 * 322.89682 * 12 11 9 40 40 H 1.08999 * 111.00532 * 204.95159 * 13 12 11 41 41 H 1.09005 * 111.00166 * 81.13493 * 13 12 11 42 42 H 0.96702 * 113.99954 * 180.02562 * 15 14 13 43 43 H 0.97003 * 120.00235 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.88131 * 59.57865 * 24 11 9 45 45 H 1.08998 * 110.00592 * 298.48511 * 24 11 9 46 46 H 1.07999 * 120.06916 * 179.72704 * 25 8 7 47 47 H 1.08004 * 119.92458 * 180.23017 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2305 6 6 1.6964 -2.0351 1.4463 7 6 2.1525 -2.6911 2.5709 8 6 2.9551 -2.0157 3.4916 9 6 3.4471 -2.7124 4.6994 10 8 2.8414 -3.6711 5.1370 11 7 4.5671 -2.2844 5.3150 12 6 5.4610 -1.2174 4.8278 13 6 6.8320 -1.5198 5.4824 14 6 6.4032 -2.0340 6.8821 15 8 6.1533 -0.9406 7.7677 16 6 7.4501 -2.9538 7.4560 17 1 8.3475 -3.1675 6.8944 18 6 7.2626 -3.5214 8.6984 19 7 6.1706 -3.2600 9.3829 20 14 8.5605 -4.6609 9.4100 21 1 9.8452 -3.9275 9.5407 22 1 8.1234 -5.1350 10.7477 23 1 8.7453 -5.8257 8.5075 24 6 5.0994 -2.8036 6.5833 25 6 3.2865 -0.6780 3.2702 26 6 2.8277 -0.0351 2.1391 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 1.0756 -2.5567 0.7329 37 1 1.8892 -3.7251 2.7385 38 1 5.0951 -0.2415 5.1469 39 1 5.5424 -1.2564 3.7416 40 1 7.4332 -0.6145 5.5660 41 1 7.3670 -2.2920 4.9296 42 1 5.8824 -1.2084 8.6565 43 1 6.0386 -3.6597 10.2568 44 1 5.3110 -3.8686 6.4881 45 1 4.3796 -2.6390 7.3851 46 1 3.9035 -0.1486 3.9811 47 1 3.0864 0.9989 1.9648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:41 Heat of formation + Delta-G solvation = -65.817454 kcal Electronic energy + Delta-G solvation = -26903.889056 eV Core-core repulsion = 23244.115277 eV Total energy + Delta-G solvation = -3659.773779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.31890 -39.07830 -37.28093 -36.10060 -34.38818 -32.17990 -31.25517 -30.62275 -29.70639 -27.89364 -27.52252 -27.50922 -25.41040 -23.90336 -22.42494 -22.11237 -19.78346 -19.50685 -19.18542 -17.27768 -16.97684 -16.12505 -15.64238 -15.30929 -14.84915 -14.77511 -14.50946 -14.50043 -14.19074 -13.79119 -13.51539 -13.24414 -13.06010 -12.93600 -12.76409 -12.69577 -12.21809 -12.20669 -12.01990 -11.93824 -11.68409 -11.48175 -11.41548 -11.17757 -11.06067 -10.91376 -10.81435 -10.70753 -10.53654 -10.49345 -10.18996 -9.43880 -9.35295 -8.93118 -8.69575 -8.66460 -8.33866 -7.90154 -6.30813 -4.39460 1.00390 1.41080 3.16006 3.21660 3.27403 3.29261 3.59399 3.96874 4.25640 4.34036 4.49783 4.73666 4.86204 4.95430 4.97239 5.01202 5.04132 5.27964 5.33114 5.35009 5.43003 5.49683 5.53118 5.60733 5.62968 5.68786 5.70782 5.75943 5.81117 5.91197 5.96501 5.99127 6.03067 6.03674 6.14053 6.39177 6.44915 6.49704 6.54549 6.73674 6.82498 6.89761 6.98298 7.25145 7.34799 7.71859 7.97476 8.18007 8.62233 8.70765 9.29235 9.41279 10.77035 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.002840 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.515243 B = 9855.086792 C =10215.081325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.056 4.056 6 C -0.126 4.126 7 C -0.064 4.064 8 C -0.123 4.123 9 C 0.560 3.440 10 O -0.549 6.549 11 N -0.604 5.604 12 C 0.098 3.902 13 C -0.120 4.120 14 C 0.249 3.751 15 O -0.586 6.586 16 C -0.538 4.538 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.896 5.896 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.101 3.899 25 C -0.094 4.094 26 C -0.131 4.131 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.386 0.614 43 H 0.272 0.728 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.140 0.860 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.823 8.069 -18.291 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.196 4.196 5 C -0.057 4.057 6 C -0.144 4.144 7 C -0.082 4.082 8 C -0.127 4.127 9 C 0.348 3.652 10 O -0.429 6.429 11 N -0.336 5.336 12 C -0.024 4.024 13 C -0.158 4.158 14 C 0.209 3.791 15 O -0.397 6.397 16 C -0.576 4.576 17 H 0.085 0.915 18 C -0.133 4.133 19 N -0.536 5.536 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.020 4.020 25 C -0.112 4.112 26 C -0.148 4.148 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.239 0.761 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.158 0.842 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.125 7.836 -18.410 21.595 hybrid contribution 0.435 -1.031 1.037 1.526 sum -7.690 6.806 -17.373 20.181 Atomic orbital electron populations 1.21893 0.93610 1.02177 1.01902 1.19541 0.95774 0.95136 0.92718 1.21975 1.01370 0.94875 1.01981 1.21892 1.01393 1.00239 0.96041 1.19968 0.96379 0.93907 0.95396 1.20876 1.01388 0.94353 0.97825 1.21212 0.94333 1.00243 0.92458 1.20063 1.01240 0.94978 0.96372 1.17993 0.80201 0.83603 0.83368 1.90741 1.57673 1.27740 1.66720 1.48674 1.23221 1.36901 1.24776 1.22597 0.91185 0.90704 0.97953 1.22803 0.94530 1.01579 0.96854 1.19465 0.89431 0.84071 0.86162 1.86067 1.91020 1.35324 1.27245 1.21488 1.05143 1.28094 1.02895 0.91517 1.25077 0.95643 0.95879 0.96678 1.69560 1.25735 1.44542 1.13729 0.86435 0.81425 0.80719 0.78189 1.19961 1.21043 1.20007 1.23068 0.97420 0.99322 0.82226 1.21917 0.98015 0.93936 0.97366 1.21120 0.98993 1.00348 0.94387 0.92389 0.92359 0.92344 0.92077 0.92404 0.92128 0.92351 0.92374 0.92357 0.85838 0.85112 0.91422 0.91463 0.90378 0.90473 0.76148 0.91814 0.91454 0.91665 0.84223 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.29 37.16 0.31 -0.72 16 2 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -1.03 7.13 37.16 0.26 -0.77 16 4 C -0.14 -1.02 8.29 37.16 0.31 -0.71 16 5 C -0.06 -0.60 4.77 -104.53 -0.50 -1.10 16 6 C -0.13 -1.46 8.69 -39.64 -0.34 -1.81 16 7 C -0.06 -0.92 9.59 -39.19 -0.38 -1.30 16 8 C -0.12 -2.03 5.67 -104.97 -0.59 -2.63 16 9 C 0.56 11.62 7.64 -12.33 -0.09 11.52 16 10 O -0.55 -13.27 16.94 5.32 0.09 -13.18 16 11 N -0.60 -12.61 3.33 -171.59 -0.57 -13.18 16 12 C 0.10 1.72 4.99 -2.50 -0.01 1.71 16 13 C -0.12 -2.35 6.22 -24.59 -0.15 -2.51 16 14 C 0.25 5.99 0.86 -89.94 -0.08 5.91 16 15 O -0.59 -14.66 13.09 -35.23 -0.46 -15.12 16 16 C -0.54 -13.99 8.11 -34.44 -0.28 -14.27 16 17 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 18 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 19 N -0.90 -23.82 10.98 55.43 0.61 -23.22 16 20 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 24 C 0.10 2.46 5.55 -3.06 -0.02 2.44 16 25 C -0.09 -1.31 8.08 -39.19 -0.32 -1.62 16 26 C -0.13 -1.49 8.96 -39.64 -0.36 -1.85 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 7.37 -51.93 -0.38 0.05 16 30 H 0.06 0.43 7.50 -51.93 -0.39 0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 33 H 0.06 0.42 7.37 -51.93 -0.38 0.04 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.12 1.15 7.08 -52.49 -0.37 0.78 16 37 H 0.13 1.91 7.84 -52.48 -0.41 1.50 16 38 H 0.07 1.12 6.82 -51.93 -0.35 0.76 16 39 H 0.07 1.00 6.85 -51.93 -0.36 0.65 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 42 H 0.39 10.00 6.98 45.56 0.32 10.32 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.07 1.78 7.82 -51.93 -0.41 1.38 16 45 H 0.06 1.73 8.07 -51.93 -0.42 1.31 16 46 H 0.14 1.89 4.61 -52.49 -0.24 1.65 16 47 H 0.13 1.19 5.87 -52.48 -0.31 0.88 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -29.52 368.79 -8.85 -38.37 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -6.59 Total: 11.72 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.46 Total: -6.35 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.04 Total: -36.40 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.37 Total: -28.30 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.52 -8.85 -38.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.449 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds