Wall clock time and date at job start Tue Mar 31 2020 13:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47148 * 2 1 4 4 C 1.53004 * 109.47168 * 240.00245 * 2 1 3 5 5 C 1.50700 * 109.47363 * 119.99914 * 2 1 3 6 6 C 1.38363 * 119.84939 * 60.00428 * 5 2 1 7 7 C 1.37956 * 120.14088 * 180.02562 * 6 5 2 8 8 C 1.39574 * 119.85351 * 359.97012 * 7 6 5 9 9 C 1.47851 * 120.14250 * 179.97438 * 8 7 6 10 10 O 1.21554 * 120.00018 * 335.55108 * 9 8 7 11 11 N 1.34776 * 119.99856 * 155.54803 * 9 8 7 12 12 C 1.47472 * 125.63030 * 354.23006 * 11 9 8 13 13 C 1.54906 * 104.81188 * 204.04692 * 12 11 9 14 14 C 1.55155 * 101.61654 * 323.04739 * 13 12 11 15 15 O 1.42903 * 110.71943 * 277.11483 * 14 13 12 16 16 C 1.50705 * 110.72109 * 154.02294 * 14 13 12 17 17 H 1.07998 * 119.99658 * 0.02562 * 16 14 13 18 18 C 1.37875 * 119.99857 * 179.97438 * 16 14 13 19 19 N 1.31513 * 120.00399 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99836 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47243 * 59.99583 * 20 18 16 22 22 H 1.48503 * 109.47443 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47382 * 300.00078 * 20 18 16 24 24 C 1.47026 * 125.64597 * 174.20826 * 11 9 8 25 25 C 1.39575 * 119.71291 * 0.25760 * 8 7 6 26 26 C 1.37957 * 119.85035 * 359.51282 * 25 8 7 27 27 H 1.08998 * 109.46611 * 299.99766 * 1 2 3 28 28 H 1.09001 * 109.47250 * 59.99906 * 1 2 3 29 29 H 1.09001 * 109.46527 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47506 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47122 * 300.00173 * 3 2 1 32 32 H 1.09000 * 109.46787 * 59.99712 * 3 2 1 33 33 H 1.08997 * 109.46988 * 300.00077 * 4 2 1 34 34 H 1.09001 * 109.47158 * 59.99793 * 4 2 1 35 35 H 1.08999 * 109.46980 * 179.97438 * 4 2 1 36 36 H 1.07995 * 119.93023 * 0.02562 * 6 5 2 37 37 H 1.08009 * 120.07262 * 179.97438 * 7 6 5 38 38 H 1.09002 * 110.34139 * 85.22914 * 12 11 9 39 39 H 1.08993 * 110.40525 * 322.89682 * 12 11 9 40 40 H 1.08999 * 111.00532 * 204.95159 * 13 12 11 41 41 H 1.09005 * 111.00166 * 81.13493 * 13 12 11 42 42 H 0.96702 * 113.99954 * 180.02562 * 15 14 13 43 43 H 0.97003 * 120.00235 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.88131 * 59.57865 * 24 11 9 45 45 H 1.08998 * 110.00592 * 298.48511 * 24 11 9 46 46 H 1.07999 * 120.06916 * 179.72704 * 25 8 7 47 47 H 1.08004 * 119.92458 * 180.23017 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2305 6 6 1.6964 -2.0351 1.4463 7 6 2.1525 -2.6911 2.5709 8 6 2.9551 -2.0157 3.4916 9 6 3.4471 -2.7124 4.6994 10 8 2.8414 -3.6711 5.1370 11 7 4.5671 -2.2844 5.3150 12 6 5.4610 -1.2174 4.8278 13 6 6.8320 -1.5198 5.4824 14 6 6.4032 -2.0340 6.8821 15 8 6.1533 -0.9406 7.7677 16 6 7.4501 -2.9538 7.4560 17 1 8.3475 -3.1675 6.8944 18 6 7.2626 -3.5214 8.6984 19 7 6.1706 -3.2600 9.3829 20 14 8.5605 -4.6609 9.4100 21 1 9.8452 -3.9275 9.5407 22 1 8.1234 -5.1350 10.7477 23 1 8.7453 -5.8257 8.5075 24 6 5.0994 -2.8036 6.5833 25 6 3.2865 -0.6780 3.2702 26 6 2.8277 -0.0351 2.1391 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 1.0756 -2.5567 0.7329 37 1 1.8892 -3.7251 2.7385 38 1 5.0951 -0.2415 5.1469 39 1 5.5424 -1.2564 3.7416 40 1 7.4332 -0.6145 5.5660 41 1 7.3670 -2.2920 4.9296 42 1 5.8824 -1.2084 8.6565 43 1 6.0386 -3.6597 10.2568 44 1 5.3110 -3.8686 6.4881 45 1 4.3796 -2.6390 7.3851 46 1 3.9035 -0.1486 3.9811 47 1 3.0864 0.9989 1.9648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:40 Heat of formation + Delta-G solvation = -83.676548 kcal Electronic energy + Delta-G solvation = -26904.663485 eV Core-core repulsion = 23244.115277 eV Total energy + Delta-G solvation = -3660.548207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60294 -40.34874 -38.97323 -37.06392 -36.18726 -34.19494 -32.39085 -31.95142 -31.07086 -29.56364 -28.17871 -28.04755 -27.20754 -25.32094 -23.69630 -23.21844 -21.49400 -20.86956 -20.17290 -19.19368 -18.41380 -17.41931 -17.24216 -16.69245 -16.53257 -16.10151 -15.76838 -15.53597 -15.11317 -14.89643 -14.81052 -14.75693 -14.58315 -14.26201 -13.99171 -13.74923 -13.52892 -13.47448 -13.25016 -12.88590 -12.85789 -12.74813 -12.60245 -12.47685 -12.35373 -12.34811 -12.18199 -12.13314 -11.78802 -11.68158 -11.37079 -11.19159 -11.05399 -10.65668 -10.32034 -9.95141 -9.81105 -9.55591 -8.29716 -6.45758 -0.12096 0.41100 1.41091 1.41812 1.49971 1.74894 2.00560 2.36145 2.80892 2.96584 3.44360 3.67061 3.72308 3.78889 3.98069 4.06859 4.12545 4.16240 4.20943 4.31714 4.38477 4.43150 4.49511 4.56536 4.64649 4.83275 4.84744 4.85497 4.95398 4.96960 5.01644 5.07808 5.08775 5.09786 5.11305 5.20476 5.27526 5.31939 5.37539 5.41652 5.48235 5.49255 5.50518 5.66875 5.72209 5.94179 6.00543 6.54206 6.62680 7.05742 7.26139 7.35377 8.76420 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.002840 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.515243 B = 9855.086792 C =10215.081325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.044 4.044 6 C -0.120 4.120 7 C -0.075 4.075 8 C -0.150 4.150 9 C 0.553 3.447 10 O -0.599 6.599 11 N -0.608 5.608 12 C 0.104 3.896 13 C -0.114 4.114 14 C 0.236 3.764 15 O -0.587 6.587 16 C -0.559 4.559 17 H 0.069 0.931 18 C 0.024 3.976 19 N -0.918 5.918 20 Si 0.965 3.035 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.117 3.883 25 C -0.094 4.094 26 C -0.125 4.125 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.379 0.621 43 H 0.272 0.728 44 H 0.032 0.968 45 H 0.030 0.970 46 H 0.143 0.857 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 10.074 -21.333 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.204 4.204 4 C -0.196 4.196 5 C -0.044 4.044 6 C -0.138 4.138 7 C -0.094 4.094 8 C -0.153 4.153 9 C 0.345 3.655 10 O -0.482 6.482 11 N -0.340 5.340 12 C -0.017 4.017 13 C -0.152 4.152 14 C 0.195 3.805 15 O -0.397 6.397 16 C -0.597 4.597 17 H 0.087 0.913 18 C -0.176 4.176 19 N -0.558 5.558 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.199 1.199 24 C -0.006 4.006 25 C -0.112 4.112 26 C -0.142 4.142 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.166 0.834 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.229 0.771 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.161 0.839 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.921 9.876 -21.484 24.937 hybrid contribution 0.292 -1.623 1.890 2.508 sum -7.629 8.253 -19.594 22.589 Atomic orbital electron populations 1.21910 0.92923 1.02380 1.02444 1.19628 0.96236 0.95656 0.91552 1.22002 1.01579 0.94014 1.02780 1.21903 1.01149 1.00373 0.96147 1.20397 0.94636 0.93458 0.95929 1.21104 1.00897 0.94861 0.96921 1.21241 0.94689 1.00055 0.93414 1.19779 1.03895 0.96236 0.95416 1.18820 0.79431 0.83061 0.84210 1.90693 1.59028 1.30136 1.68337 1.48721 1.23912 1.37629 1.23693 1.22779 0.89063 0.90110 0.99721 1.22807 0.96044 1.02356 0.93990 1.19665 0.88722 0.84056 0.88039 1.86053 1.90972 1.35686 1.26943 1.21840 1.05705 1.28771 1.03355 0.91316 1.25843 0.97417 0.97213 0.97165 1.69669 1.27041 1.45233 1.13855 0.85494 0.79319 0.78856 0.77305 1.19031 1.20896 1.19940 1.22604 0.97153 0.97636 0.83214 1.21946 0.98229 0.92683 0.98331 1.21432 0.98122 1.01493 0.93166 0.93052 0.90694 0.92377 0.91808 0.90981 0.92115 0.92370 0.90767 0.92768 0.83423 0.86356 0.89862 0.88039 0.88590 0.89962 0.77057 0.91905 0.94904 0.95104 0.83914 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.29 71.98 0.60 -0.99 16 2 C -0.03 -0.38 0.85 -52.93 -0.05 -0.43 16 3 C -0.15 -1.47 7.13 71.98 0.51 -0.96 16 4 C -0.14 -1.51 8.29 71.98 0.60 -0.91 16 5 C -0.04 -0.80 4.77 -19.81 -0.09 -0.90 16 6 C -0.12 -2.53 8.69 22.23 0.19 -2.33 16 7 C -0.07 -2.16 9.59 22.53 0.22 -1.94 16 8 C -0.15 -4.93 5.67 -20.09 -0.11 -5.05 16 9 C 0.55 23.91 7.64 86.79 0.66 24.57 16 10 O -0.60 -30.88 16.94 -3.88 -0.07 -30.94 16 11 N -0.61 -26.12 3.33 -815.08 -2.71 -28.83 16 12 C 0.10 3.52 4.99 86.85 0.43 3.95 16 13 C -0.11 -4.38 6.22 31.98 0.20 -4.18 16 14 C 0.24 11.55 0.86 -10.35 -0.01 11.55 16 15 O -0.59 -29.94 13.09 -148.98 -1.95 -31.89 16 16 C -0.56 -29.58 8.11 25.60 0.21 -29.38 16 17 H 0.07 3.52 7.76 -2.91 -0.02 3.49 16 18 C 0.02 1.28 5.28 84.65 0.45 1.73 16 19 N -0.92 -50.58 10.98 21.45 0.24 -50.35 16 20 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.12 6.02 5.55 86.73 0.48 6.50 16 25 C -0.09 -2.42 8.08 22.53 0.18 -2.23 16 26 C -0.12 -2.43 8.96 22.23 0.20 -2.23 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.67 7.37 -2.39 -0.02 0.65 16 30 H 0.06 0.62 7.50 -2.39 -0.02 0.61 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.62 7.51 -2.39 -0.02 0.61 16 33 H 0.06 0.64 7.37 -2.39 -0.02 0.62 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.15 2.35 7.08 -2.91 -0.02 2.33 16 37 H 0.12 3.62 7.84 -2.91 -0.02 3.59 16 38 H 0.08 2.58 6.82 -2.39 -0.02 2.56 16 39 H 0.10 2.76 6.85 -2.39 -0.02 2.74 16 40 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.08 3.04 8.03 -2.38 -0.02 3.03 16 42 H 0.38 20.38 6.98 -74.06 -0.52 19.86 16 43 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.03 1.86 7.82 -2.39 -0.02 1.84 16 45 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 46 H 0.14 3.53 4.61 -2.91 -0.01 3.52 16 47 H 0.16 2.21 5.87 -2.91 -0.02 2.19 16 Total: -1.00 -67.56 368.79 2.66 -64.90 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 0.46 Total: 35.88 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 4.67 Total: -3.23 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.48 Total: -79.18 kcal Atomic # 8 Polarization: -60.82 SS G_CDS: -2.02 Total: -62.84 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.56 2.66 -64.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.773 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds