Wall clock time and date at job start Tue Mar 31 2020 13:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46942 * 2 1 4 4 C 1.53004 * 109.47230 * 119.99443 * 2 1 3 5 5 C 1.50701 * 109.47008 * 299.99961 * 4 2 1 6 6 C 1.38242 * 119.99706 * 90.00082 * 5 4 2 7 7 C 1.38235 * 119.99843 * 180.02562 * 6 5 4 8 8 C 1.38234 * 119.99998 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00242 * 0.25940 * 8 7 6 10 10 C 1.38233 * 119.99891 * 359.48271 * 9 8 7 11 11 C 1.50691 * 109.47342 * 239.99652 * 2 1 3 12 12 O 1.21284 * 120.00499 * 230.23699 * 11 2 1 13 13 N 1.34778 * 120.00094 * 50.24010 * 11 2 1 14 14 C 1.47417 * 125.64742 * 3.86949 * 13 11 2 15 15 C 1.55126 * 104.72607 * 155.81604 * 14 13 11 16 16 C 1.55162 * 101.48498 * 37.29184 * 15 14 13 17 17 O 1.42904 * 110.71435 * 82.69711 * 16 15 14 18 18 C 1.50695 * 110.87505 * 205.89785 * 16 15 14 19 19 H 1.07997 * 119.99872 * 113.60906 * 18 16 15 20 20 C 1.37878 * 120.00334 * 293.61391 * 18 16 15 21 21 N 1.31521 * 119.99849 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00263 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47128 * 90.00095 * 22 20 18 24 24 H 1.48500 * 109.47224 * 209.99678 * 22 20 18 25 25 H 1.48500 * 109.47271 * 330.00033 * 22 20 18 26 26 C 1.47024 * 125.64783 * 184.17214 * 13 11 2 27 27 H 1.09003 * 109.47620 * 300.00325 * 1 2 3 28 28 H 1.08999 * 109.47536 * 60.00315 * 1 2 3 29 29 H 1.09001 * 109.46721 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47253 * 172.17574 * 3 2 1 31 31 H 1.09003 * 109.46374 * 292.17127 * 3 2 1 32 32 H 1.08999 * 109.47040 * 52.16970 * 3 2 1 33 33 H 1.09007 * 109.46970 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.46810 * 60.00115 * 4 2 1 35 35 H 1.08001 * 120.00146 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.99304 * 179.97438 * 7 6 5 37 37 H 1.07999 * 119.99638 * 179.97438 * 8 7 6 38 38 H 1.07993 * 120.00033 * 179.72748 * 9 8 7 39 39 H 1.07999 * 120.00516 * 180.23102 * 10 9 8 40 40 H 1.09003 * 110.36853 * 274.74863 * 14 13 11 41 41 H 1.09000 * 110.37135 * 37.06926 * 14 13 11 42 42 H 1.09005 * 111.19324 * 279.18983 * 15 14 13 43 43 H 1.08998 * 110.94347 * 155.28442 * 15 14 13 44 44 H 0.96700 * 114.00049 * 66.48489 * 17 16 15 45 45 H 0.97002 * 119.99692 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.88515 * 300.43863 * 26 13 11 47 47 H 1.09006 * 109.88199 * 61.61229 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5376 -0.0106 2.4797 6 6 0.3297 -0.3760 3.0441 7 6 -0.1313 0.2761 4.1724 8 6 0.6157 1.2932 4.7366 9 6 1.8212 1.6618 4.1695 10 6 2.2849 1.0062 3.0443 11 6 2.0323 -0.7104 -1.2303 12 8 2.8678 -1.5835 -1.1279 13 7 1.5531 -0.3756 -2.4447 14 6 0.6009 0.7151 -2.7218 15 6 0.8504 1.0888 -4.2065 16 6 1.1277 -0.3033 -4.8331 17 8 -0.0971 -0.9731 -5.1387 18 6 1.9855 -0.1762 -6.0655 19 1 2.9875 -0.5792 -6.0699 20 6 1.4913 0.4545 -7.1875 21 7 0.2709 0.9449 -7.1823 22 14 2.5549 0.6127 -8.7150 23 1 2.3433 -0.5683 -9.5899 24 1 2.1829 1.8473 -9.4515 25 1 3.9840 0.6848 -8.3178 26 6 1.8888 -1.0416 -3.7118 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1209 1.4458 0.1399 31 1 1.7953 1.9143 -0.9517 32 1 1.5668 1.9952 0.8117 33 1 3.1300 -0.7207 1.2495 34 1 1.6766 -1.7488 1.2494 35 1 -0.2541 -1.1703 2.6030 36 1 -1.0752 -0.0091 4.6130 37 1 0.2552 1.8029 5.6179 38 1 2.4027 2.4594 4.6077 39 1 3.2285 1.2916 2.6033 40 1 -0.4233 0.3692 -2.5822 41 1 0.8047 1.5698 -2.0766 42 1 1.7167 1.7426 -4.3081 43 1 -0.0354 1.5462 -4.6473 44 1 -0.6135 -0.5491 -5.8376 45 1 -0.0766 1.3890 -7.9716 46 1 2.9624 -0.9801 -3.8899 47 1 1.5759 -2.0851 -3.6763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:47 Heat of formation + Delta-G solvation = -62.319432 kcal Electronic energy + Delta-G solvation = -27406.118867 eV Core-core repulsion = 23746.496774 eV Total energy + Delta-G solvation = -3659.622093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.45283 -39.19549 -37.41011 -35.63953 -34.37554 -32.17162 -31.45876 -31.07917 -29.59809 -28.34759 -27.33111 -26.69732 -25.27497 -23.37721 -22.59107 -21.80655 -20.63426 -19.54073 -18.52027 -17.23283 -16.73530 -16.25411 -15.57667 -15.38027 -15.22660 -15.08161 -14.90200 -14.20269 -14.18956 -13.83846 -13.54457 -13.28515 -13.07084 -12.87356 -12.76247 -12.44039 -12.26269 -11.94300 -11.85554 -11.75077 -11.52269 -11.45067 -11.31939 -11.07970 -11.05005 -10.97959 -10.81723 -10.63045 -10.50371 -10.39417 -10.13262 -9.43933 -9.18482 -9.01555 -8.76177 -8.67605 -8.22568 -7.99108 -6.32192 -4.39177 1.23583 1.27942 3.07299 3.18597 3.25999 3.29413 3.48800 3.71989 4.24714 4.58065 4.72219 4.80460 4.86077 4.93577 4.96075 4.98408 5.08584 5.29285 5.35433 5.41015 5.42230 5.65308 5.68702 5.72636 5.77419 5.83862 5.84543 5.88434 5.94114 5.98065 6.03093 6.13813 6.16704 6.27341 6.34563 6.38480 6.41888 6.45440 6.58736 6.69187 6.89023 6.89419 6.96045 7.27659 7.31662 7.71234 7.98326 8.13312 8.61426 8.65740 9.29202 9.43121 10.75589 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.002878 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.017625 B = 9727.424393 C = 9798.714054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.068 4.068 3 C -0.148 4.148 4 C -0.059 4.059 5 C -0.069 4.069 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.129 4.129 9 C -0.121 4.121 10 C -0.115 4.115 11 C 0.531 3.469 12 O -0.556 6.556 13 N -0.604 5.604 14 C 0.088 3.912 15 C -0.138 4.138 16 C 0.248 3.752 17 O -0.587 6.587 18 C -0.534 4.534 19 H 0.064 0.936 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.122 3.878 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.386 0.614 45 H 0.269 0.731 46 H 0.071 0.929 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 3.895 18.686 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.071 4.071 3 C -0.205 4.205 4 C -0.096 4.096 5 C -0.069 4.069 6 C -0.133 4.133 7 C -0.139 4.139 8 C -0.147 4.147 9 C -0.139 4.139 10 C -0.133 4.133 11 C 0.319 3.681 12 O -0.435 6.435 13 N -0.335 5.335 14 C -0.034 4.034 15 C -0.177 4.177 16 C 0.208 3.792 17 O -0.397 6.397 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.131 4.131 21 N -0.538 5.538 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C 0.000 4.000 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.238 0.762 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.260 3.102 19.145 19.436 hybrid contribution 0.235 0.593 -1.321 1.467 sum -1.026 3.696 17.825 18.233 Atomic orbital electron populations 1.22265 0.92863 1.02808 1.03653 1.20579 0.97309 0.96586 0.92607 1.22065 1.01436 0.93900 1.03074 1.20467 1.01537 0.98373 0.89248 1.19896 0.94619 0.96178 0.96216 1.21115 0.95878 1.00227 0.96037 1.21127 0.99794 0.96639 0.96324 1.21104 0.95390 0.98001 1.00192 1.21123 0.96490 0.99912 0.96364 1.21110 1.00009 0.96046 0.96088 1.20071 0.81465 0.83133 0.83399 1.90648 1.33277 1.33345 1.86210 1.48558 1.44648 1.33760 1.06576 1.22861 0.92481 0.88947 0.99102 1.23382 1.02428 1.00866 0.91048 1.19427 0.83059 0.86143 0.90578 1.86096 1.35720 1.56946 1.60973 1.21550 1.00683 1.37510 0.97487 0.91739 1.24991 0.95286 0.93886 0.98893 1.69575 1.15574 1.38442 1.30211 0.86400 0.80613 0.77656 0.82234 1.20377 1.21035 1.19724 1.22085 0.99580 0.96608 0.81734 0.91454 0.90457 0.92370 0.92167 0.91183 0.91342 0.90060 0.90479 0.86069 0.86297 0.86459 0.86309 0.86072 0.91566 0.91257 0.91476 0.89703 0.76206 0.92101 0.91098 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 7.56 37.15 0.28 -1.71 16 2 C -0.07 -0.94 0.52 -155.66 -0.08 -1.02 16 3 C -0.15 -1.82 7.44 37.16 0.28 -1.54 16 4 C -0.06 -0.75 3.80 -27.88 -0.11 -0.86 16 5 C -0.07 -0.76 4.02 -104.62 -0.42 -1.18 16 6 C -0.11 -1.17 7.88 -39.58 -0.31 -1.49 16 7 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 8 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 9 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 10 C -0.11 -1.17 8.09 -39.58 -0.32 -1.49 16 11 C 0.53 9.81 6.58 -10.99 -0.07 9.74 16 12 O -0.56 -12.02 16.31 5.55 0.09 -11.93 16 13 N -0.60 -11.71 3.30 -170.39 -0.56 -12.28 16 14 C 0.09 1.55 4.83 -2.42 -0.01 1.53 16 15 C -0.14 -2.91 5.69 -24.46 -0.14 -3.05 16 16 C 0.25 5.91 0.85 -89.94 -0.08 5.83 16 17 O -0.59 -14.65 13.08 -35.23 -0.46 -15.11 16 18 C -0.53 -13.82 8.22 -34.44 -0.28 -14.11 16 19 H 0.06 1.68 7.53 -52.49 -0.40 1.29 16 20 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 21 N -0.90 -22.74 10.71 55.43 0.59 -22.14 16 22 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.12 2.74 6.22 -3.06 -0.02 2.72 16 27 H 0.07 0.74 6.17 -51.93 -0.32 0.42 16 28 H 0.08 1.00 4.13 -51.93 -0.21 0.79 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.07 0.90 5.10 -51.93 -0.27 0.63 16 32 H 0.07 0.74 6.73 -51.93 -0.35 0.39 16 33 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 34 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.12 1.15 8.03 -52.49 -0.42 0.73 16 36 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.12 1.13 8.03 -52.49 -0.42 0.71 16 40 H 0.07 1.14 6.91 -51.93 -0.36 0.78 16 41 H 0.07 1.03 4.58 -51.93 -0.24 0.79 16 42 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 43 H 0.08 1.85 7.78 -51.93 -0.40 1.45 16 44 H 0.39 9.72 6.98 45.56 0.32 10.03 16 45 H 0.27 6.53 8.31 -40.82 -0.34 6.20 16 46 H 0.07 1.64 7.63 -51.93 -0.40 1.24 16 47 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -28.23 361.88 -8.86 -37.09 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -6.38 Total: 13.27 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -2.57 Total: -9.42 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.03 Total: -34.42 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.37 Total: -27.04 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.23 -8.86 -37.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.231 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds