Wall clock time and date at job start Tue Mar 31 2020 13:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46942 * 2 1 4 4 C 1.53004 * 109.47230 * 119.99443 * 2 1 3 5 5 C 1.50701 * 109.47008 * 299.99961 * 4 2 1 6 6 C 1.38242 * 119.99706 * 90.00082 * 5 4 2 7 7 C 1.38235 * 119.99843 * 180.02562 * 6 5 4 8 8 C 1.38234 * 119.99998 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00242 * 0.25940 * 8 7 6 10 10 C 1.38233 * 119.99891 * 359.48271 * 9 8 7 11 11 C 1.50691 * 109.47342 * 239.99652 * 2 1 3 12 12 O 1.21284 * 120.00499 * 230.23699 * 11 2 1 13 13 N 1.34778 * 120.00094 * 50.24010 * 11 2 1 14 14 C 1.47417 * 125.64742 * 3.86949 * 13 11 2 15 15 C 1.55126 * 104.72607 * 155.81604 * 14 13 11 16 16 C 1.55162 * 101.48498 * 37.29184 * 15 14 13 17 17 O 1.42904 * 110.71435 * 82.69711 * 16 15 14 18 18 C 1.50695 * 110.87505 * 205.89785 * 16 15 14 19 19 H 1.07997 * 119.99872 * 113.60906 * 18 16 15 20 20 C 1.37878 * 120.00334 * 293.61391 * 18 16 15 21 21 N 1.31521 * 119.99849 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00263 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47128 * 90.00095 * 22 20 18 24 24 H 1.48500 * 109.47224 * 209.99678 * 22 20 18 25 25 H 1.48500 * 109.47271 * 330.00033 * 22 20 18 26 26 C 1.47024 * 125.64783 * 184.17214 * 13 11 2 27 27 H 1.09003 * 109.47620 * 300.00325 * 1 2 3 28 28 H 1.08999 * 109.47536 * 60.00315 * 1 2 3 29 29 H 1.09001 * 109.46721 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47253 * 172.17574 * 3 2 1 31 31 H 1.09003 * 109.46374 * 292.17127 * 3 2 1 32 32 H 1.08999 * 109.47040 * 52.16970 * 3 2 1 33 33 H 1.09007 * 109.46970 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.46810 * 60.00115 * 4 2 1 35 35 H 1.08001 * 120.00146 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.99304 * 179.97438 * 7 6 5 37 37 H 1.07999 * 119.99638 * 179.97438 * 8 7 6 38 38 H 1.07993 * 120.00033 * 179.72748 * 9 8 7 39 39 H 1.07999 * 120.00516 * 180.23102 * 10 9 8 40 40 H 1.09003 * 110.36853 * 274.74863 * 14 13 11 41 41 H 1.09000 * 110.37135 * 37.06926 * 14 13 11 42 42 H 1.09005 * 111.19324 * 279.18983 * 15 14 13 43 43 H 1.08998 * 110.94347 * 155.28442 * 15 14 13 44 44 H 0.96700 * 114.00049 * 66.48489 * 17 16 15 45 45 H 0.97002 * 119.99692 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.88515 * 300.43863 * 26 13 11 47 47 H 1.09006 * 109.88199 * 61.61229 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5376 -0.0106 2.4797 6 6 0.3297 -0.3760 3.0441 7 6 -0.1313 0.2761 4.1724 8 6 0.6157 1.2932 4.7366 9 6 1.8212 1.6618 4.1695 10 6 2.2849 1.0062 3.0443 11 6 2.0323 -0.7104 -1.2303 12 8 2.8678 -1.5835 -1.1279 13 7 1.5531 -0.3756 -2.4447 14 6 0.6009 0.7151 -2.7218 15 6 0.8504 1.0888 -4.2065 16 6 1.1277 -0.3033 -4.8331 17 8 -0.0971 -0.9731 -5.1387 18 6 1.9855 -0.1762 -6.0655 19 1 2.9875 -0.5792 -6.0699 20 6 1.4913 0.4545 -7.1875 21 7 0.2709 0.9449 -7.1823 22 14 2.5549 0.6127 -8.7150 23 1 2.3433 -0.5683 -9.5899 24 1 2.1829 1.8473 -9.4515 25 1 3.9840 0.6848 -8.3178 26 6 1.8888 -1.0416 -3.7118 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1209 1.4458 0.1399 31 1 1.7953 1.9143 -0.9517 32 1 1.5668 1.9952 0.8117 33 1 3.1300 -0.7207 1.2495 34 1 1.6766 -1.7488 1.2494 35 1 -0.2541 -1.1703 2.6030 36 1 -1.0752 -0.0091 4.6130 37 1 0.2552 1.8029 5.6179 38 1 2.4027 2.4594 4.6077 39 1 3.2285 1.2916 2.6033 40 1 -0.4233 0.3692 -2.5822 41 1 0.8047 1.5698 -2.0766 42 1 1.7167 1.7426 -4.3081 43 1 -0.0354 1.5462 -4.6473 44 1 -0.6135 -0.5491 -5.8376 45 1 -0.0766 1.3890 -7.9716 46 1 2.9624 -0.9801 -3.8899 47 1 1.5759 -2.0851 -3.6763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:46 Heat of formation + Delta-G solvation = -78.405236 kcal Electronic energy + Delta-G solvation = -27406.816400 eV Core-core repulsion = 23746.496774 eV Total energy + Delta-G solvation = -3660.319626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.75957 -40.20654 -39.04682 -36.85476 -36.10722 -34.15310 -32.44650 -31.77617 -31.22616 -30.01537 -28.32899 -27.69391 -27.08979 -24.84051 -23.29245 -22.95899 -21.92113 -21.19133 -19.92693 -19.14086 -17.68564 -17.40965 -17.06891 -16.97725 -16.62260 -16.18826 -16.07520 -15.78402 -15.47599 -14.98434 -14.86158 -14.53002 -14.21610 -14.04834 -13.78166 -13.77391 -13.55357 -13.44166 -13.31880 -13.23261 -12.93112 -12.84717 -12.72556 -12.63347 -12.37457 -12.28347 -11.98500 -11.93134 -11.85361 -11.72807 -11.64453 -11.27744 -10.74281 -10.57080 -10.12989 -9.71751 -9.62145 -9.51920 -8.26716 -6.40523 0.50150 0.57958 1.40623 1.43909 1.52384 1.59244 2.01998 2.38849 2.94718 2.98593 3.36087 3.76338 3.80550 3.84549 3.95183 4.06595 4.12858 4.14953 4.24612 4.30163 4.36832 4.39251 4.49879 4.55374 4.58881 4.70913 4.74788 4.75309 4.83681 4.89473 4.92467 4.97854 5.03878 5.16193 5.21939 5.23313 5.24226 5.30902 5.34414 5.45135 5.50881 5.65934 5.70828 5.75435 5.81219 6.05122 6.19671 6.57779 6.64905 7.11540 7.30295 7.44271 8.79630 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.002878 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.017625 B = 9727.424393 C = 9798.714054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.052 4.052 5 C -0.081 4.081 6 C -0.124 4.124 7 C -0.124 4.124 8 C -0.129 4.129 9 C -0.124 4.124 10 C -0.123 4.123 11 C 0.525 3.475 12 O -0.593 6.593 13 N -0.606 5.606 14 C 0.099 3.901 15 C -0.130 4.130 16 C 0.237 3.763 17 O -0.594 6.594 18 C -0.563 4.563 19 H 0.050 0.950 20 C 0.037 3.963 21 N -0.906 5.906 22 Si 0.960 3.040 23 H -0.278 1.278 24 H -0.275 1.275 25 H -0.275 1.275 26 C 0.127 3.873 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.383 0.617 45 H 0.273 0.727 46 H 0.056 0.944 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 5.785 20.545 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.061 4.061 3 C -0.199 4.199 4 C -0.089 4.089 5 C -0.081 4.081 6 C -0.142 4.142 7 C -0.142 4.142 8 C -0.147 4.147 9 C -0.142 4.142 10 C -0.141 4.141 11 C 0.316 3.684 12 O -0.474 6.474 13 N -0.337 5.337 14 C -0.022 4.022 15 C -0.168 4.168 16 C 0.197 3.803 17 O -0.405 6.405 18 C -0.601 4.601 19 H 0.069 0.931 20 C -0.164 4.164 21 N -0.546 5.546 22 Si 0.785 3.215 23 H -0.204 1.204 24 H -0.200 1.200 25 H -0.200 1.200 26 C 0.004 3.996 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.143 0.857 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.234 0.766 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.124 5.008 21.020 21.713 hybrid contribution 0.510 -0.042 -1.857 1.926 sum -1.614 4.966 19.163 19.862 Atomic orbital electron populations 1.22238 0.91455 1.02774 1.04567 1.20595 0.98250 0.97050 0.90253 1.22048 1.01641 0.92592 1.03663 1.20338 1.00682 0.97937 0.89986 1.19717 0.95474 0.96993 0.95908 1.21224 0.95725 1.00595 0.96685 1.21398 1.00614 0.96422 0.95795 1.21454 0.95023 0.97589 1.00619 1.21401 0.96829 1.00132 0.95820 1.21228 1.00177 0.96028 0.96687 1.21057 0.80546 0.82678 0.84134 1.90623 1.34958 1.35111 1.86753 1.48621 1.45133 1.34029 1.05956 1.22907 0.92525 0.89454 0.97344 1.23178 1.01658 0.98845 0.93162 1.19557 0.82479 0.87796 0.90473 1.86082 1.36085 1.57477 1.60814 1.21743 1.00647 1.38562 0.99155 0.93135 1.25581 0.96416 0.93460 1.00929 1.69622 1.16077 1.38039 1.30847 0.85536 0.78999 0.77734 0.79208 1.20421 1.20038 1.20009 1.21801 0.98519 0.95881 0.83376 0.89301 0.90584 0.92988 0.92236 0.91507 0.89114 0.91370 0.91798 0.85858 0.84372 0.84151 0.84305 0.85714 0.90570 0.87769 0.92246 0.90400 0.76580 0.91715 0.92570 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 7.56 71.98 0.54 -3.00 16 2 C -0.06 -1.56 0.52 -52.93 -0.03 -1.58 16 3 C -0.14 -3.20 7.44 71.98 0.54 -2.67 16 4 C -0.05 -1.31 3.80 29.85 0.11 -1.20 16 5 C -0.08 -1.66 4.02 -19.86 -0.08 -1.74 16 6 C -0.12 -2.29 7.88 22.27 0.18 -2.11 16 7 C -0.12 -1.90 10.05 22.27 0.22 -1.67 16 8 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 9 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 10 C -0.12 -2.24 8.09 22.27 0.18 -2.06 16 11 C 0.53 19.54 6.58 87.65 0.58 20.12 16 12 O -0.59 -26.47 16.31 -3.04 -0.05 -26.52 16 13 N -0.61 -23.65 3.30 -811.38 -2.68 -26.33 16 14 C 0.10 3.35 4.83 86.93 0.42 3.77 16 15 C -0.13 -5.44 5.69 32.06 0.18 -5.25 16 16 C 0.24 11.53 0.85 -10.35 -0.01 11.52 16 17 O -0.59 -30.22 13.08 -148.98 -1.95 -32.17 16 18 C -0.56 -29.84 8.22 25.60 0.21 -29.63 16 19 H 0.05 2.74 7.53 -2.91 -0.02 2.72 16 20 C 0.04 1.90 5.28 84.65 0.45 2.35 16 21 N -0.91 -45.74 10.71 21.45 0.23 -45.51 16 22 Si 0.96 41.23 29.54 68.60 2.03 43.26 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.13 5.94 6.22 86.73 0.54 6.48 16 27 H 0.09 1.70 6.17 -2.39 -0.01 1.69 16 28 H 0.08 1.78 4.13 -2.39 -0.01 1.77 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 31 H 0.07 1.54 5.10 -2.39 -0.01 1.53 16 32 H 0.09 1.67 6.73 -2.39 -0.02 1.65 16 33 H 0.07 1.88 7.94 -2.38 -0.02 1.86 16 34 H 0.06 1.75 8.09 -2.39 -0.02 1.73 16 35 H 0.12 2.14 8.03 -2.91 -0.02 2.12 16 36 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 38 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.12 2.10 8.03 -2.91 -0.02 2.08 16 40 H 0.08 2.48 6.91 -2.39 -0.02 2.46 16 41 H 0.10 2.84 4.58 -2.39 -0.01 2.83 16 42 H 0.06 2.55 8.05 -2.38 -0.02 2.53 16 43 H 0.08 3.36 7.78 -2.39 -0.02 3.35 16 44 H 0.38 19.58 6.98 -74.06 -0.52 19.06 16 45 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 46 H 0.06 2.74 7.63 -2.39 -0.02 2.72 16 47 H 0.04 2.03 8.07 -2.38 -0.02 2.01 16 Total: -1.00 -61.51 361.88 2.52 -58.99 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: 0.46 Total: 38.18 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.48 Total: -9.90 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -2.45 Total: -71.84 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -2.00 Total: -58.69 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -61.51 2.52 -58.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.419 kcal (2) G-P(sol) polarization free energy of solvation -61.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds