Wall clock time and date at job start Tue Mar 31 2020 13:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46657 * 2 1 4 4 C 1.52997 * 109.47008 * 240.00154 * 2 1 3 5 5 C 1.50692 * 109.47094 * 119.99881 * 2 1 3 6 6 C 1.38385 * 119.92776 * 0.02562 * 5 2 1 7 7 C 1.38342 * 120.29170 * 180.27555 * 6 5 2 8 8 C 1.37981 * 120.14330 * 359.48687 * 7 6 5 9 9 C 1.39550 * 119.85097 * 0.51289 * 8 7 6 10 10 C 1.47847 * 120.14038 * 179.76896 * 9 8 7 11 11 O 1.21554 * 119.99754 * 204.51456 * 10 9 8 12 12 N 1.34774 * 120.00584 * 24.50766 * 10 9 8 13 13 C 1.47426 * 125.64164 * 5.46890 * 12 10 9 14 14 C 1.55131 * 104.72098 * 155.81515 * 13 12 10 15 15 C 1.55156 * 101.48780 * 37.29356 * 14 13 12 16 16 O 1.42891 * 110.72402 * 82.69420 * 15 14 13 17 17 C 1.50707 * 110.87327 * 205.90288 * 15 14 13 18 18 H 1.07999 * 119.99557 * 355.06052 * 17 15 14 19 19 C 1.37875 * 119.99970 * 175.06305 * 17 15 14 20 20 N 1.31516 * 119.99998 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 120.00022 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47089 * 59.99930 * 21 19 17 23 23 H 1.48497 * 109.47314 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47155 * 300.00220 * 21 19 17 25 25 C 1.47017 * 125.65345 * 185.76827 * 12 10 9 26 26 C 1.37932 * 119.92861 * 180.02562 * 5 2 1 27 27 H 1.08999 * 109.47755 * 299.99817 * 1 2 3 28 28 H 1.09003 * 109.47307 * 60.00372 * 1 2 3 29 29 H 1.08997 * 109.46943 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46883 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47524 * 299.99799 * 3 2 1 32 32 H 1.09007 * 109.47145 * 60.00263 * 3 2 1 33 33 H 1.08994 * 109.47598 * 299.99389 * 4 2 1 34 34 H 1.09001 * 109.47157 * 60.00485 * 4 2 1 35 35 H 1.09002 * 109.46746 * 179.97438 * 4 2 1 36 36 H 1.07997 * 119.85314 * 359.97438 * 6 5 2 37 37 H 1.07995 * 119.92647 * 179.74722 * 7 6 5 38 38 H 1.08003 * 120.07029 * 180.25903 * 8 7 6 39 39 H 1.09000 * 110.36756 * 274.74121 * 13 12 10 40 40 H 1.08995 * 110.37170 * 37.06498 * 13 12 10 41 41 H 1.09004 * 111.19464 * 279.18667 * 14 13 12 42 42 H 1.09002 * 110.94059 * 155.28790 * 14 13 12 43 43 H 0.96697 * 114.00547 * 185.02381 * 16 15 14 44 44 H 0.97002 * 119.99872 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.88676 * 300.44524 * 25 12 10 46 46 H 1.08999 * 109.88247 * 61.45571 * 25 12 10 47 47 H 1.07996 * 120.07306 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2304 6 6 1.1317 -1.2361 2.1401 7 6 1.5845 -1.8847 3.2750 8 6 2.9388 -2.0206 3.5016 9 6 3.8523 -1.4926 2.5883 10 6 5.3048 -1.6301 2.8273 11 8 6.0804 -0.8376 2.3293 12 7 5.7691 -2.6339 3.5975 13 6 4.9581 -3.7254 4.1672 14 6 5.9637 -4.8835 4.4000 15 6 7.2269 -4.1083 4.8591 16 8 7.1540 -3.8031 6.2531 17 6 8.4780 -4.8899 4.5510 18 1 8.4049 -5.8880 4.1450 19 6 9.7159 -4.3308 4.7875 20 7 9.8049 -3.1152 5.2815 21 14 11.2667 -5.2998 4.4063 22 1 11.2962 -5.6382 2.9606 23 1 12.4581 -4.4815 4.7469 24 1 11.2787 -6.5500 5.2075 25 6 7.1670 -2.8184 4.0139 26 6 3.3887 -0.8351 1.4475 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9564 0.8901 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 0.0707 -1.1354 1.9657 37 1 0.8765 -2.2893 3.9831 38 1 3.2910 -2.5309 4.3860 39 1 4.5108 -3.4129 5.1107 40 1 4.1848 -4.0309 3.4625 41 1 6.1551 -5.4307 3.4769 42 1 5.6107 -5.5543 5.1833 43 1 7.8818 -3.2533 6.5740 44 1 10.6758 -2.7217 5.4475 45 1 7.8050 -2.9205 3.1360 46 1 7.4916 -1.9661 4.6108 47 1 4.0905 -0.4239 0.7370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594375111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:12 Heat of formation + Delta-G solvation = -65.372325 kcal Electronic energy + Delta-G solvation = -27062.163635 eV Core-core repulsion = 23402.409158 eV Total energy + Delta-G solvation = -3659.754477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.32868 -39.02367 -37.21609 -36.21758 -34.34151 -32.24116 -31.30250 -30.38557 -29.76915 -27.89415 -27.53099 -27.40399 -25.31990 -23.81006 -22.70945 -22.03698 -20.04346 -19.62842 -18.61492 -17.18177 -16.79459 -16.30938 -15.67517 -15.29480 -14.89139 -14.79463 -14.62947 -14.44298 -14.16067 -13.84481 -13.56327 -13.23765 -12.97260 -12.93360 -12.72065 -12.37290 -12.30018 -12.13496 -11.93780 -11.86491 -11.69509 -11.53957 -11.39951 -11.12897 -11.04352 -10.88945 -10.78818 -10.68816 -10.52895 -10.51353 -10.20034 -9.42937 -9.32899 -8.88371 -8.71542 -8.66977 -8.33710 -7.90037 -6.29238 -4.37959 1.03368 1.37826 3.17304 3.22313 3.28076 3.29864 3.58410 3.96505 4.26686 4.40582 4.57300 4.79927 4.82521 4.97309 4.99158 5.05616 5.13552 5.27609 5.33592 5.41411 5.44685 5.53280 5.56915 5.64656 5.68932 5.71484 5.72778 5.77369 5.83920 5.94298 5.95101 6.05722 6.06619 6.12889 6.14652 6.41425 6.44265 6.49941 6.54865 6.73091 6.83685 6.89989 6.98984 7.24946 7.36206 7.71816 7.99954 8.18260 8.63781 8.71038 9.27411 9.36506 10.78599 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024526 B = 0.003050 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.348747 B = 9178.317151 C = 9693.295211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.083 4.083 6 C -0.105 4.105 7 C -0.127 4.127 8 C -0.103 4.103 9 C -0.116 4.116 10 C 0.559 3.441 11 O -0.548 6.548 12 N -0.604 5.604 13 C 0.098 3.902 14 C -0.119 4.119 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.104 3.896 26 C -0.061 4.061 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.140 0.860 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.382 0.618 44 H 0.271 0.729 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.530 3.948 -7.422 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.198 4.198 5 C -0.084 4.084 6 C -0.123 4.123 7 C -0.145 4.145 8 C -0.121 4.121 9 C -0.119 4.119 10 C 0.348 3.652 11 O -0.428 6.428 12 N -0.336 5.336 13 C -0.025 4.025 14 C -0.157 4.157 15 C 0.208 3.792 16 O -0.394 6.394 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.533 5.533 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.017 4.017 26 C -0.080 4.080 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.157 0.843 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.233 0.767 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.519 4.203 -7.706 20.494 hybrid contribution 1.453 -0.087 -0.063 1.457 sum -17.066 4.117 -7.769 19.198 Atomic orbital electron populations 1.21958 0.94199 1.01920 1.01899 1.19481 0.95557 0.95149 0.92611 1.21915 1.01675 0.94441 1.01761 1.21911 1.01588 1.00215 0.96052 1.19728 0.92898 0.99344 0.96381 1.21308 0.99693 0.97416 0.93931 1.21094 0.95347 1.00212 0.97838 1.21922 0.93088 0.97641 0.99427 1.20048 0.93346 1.01587 0.96950 1.17974 0.87453 0.80890 0.78882 1.90743 1.58137 1.43263 1.50609 1.48693 1.11827 1.24615 1.48508 1.22642 0.94612 0.87968 0.97286 1.22830 0.95433 0.96141 1.01287 1.19498 0.91895 0.88630 0.79175 1.86099 1.52912 1.74768 1.25592 1.21454 0.90172 1.01913 1.44124 0.91580 1.25071 0.99617 0.94847 0.93729 1.69686 1.25802 1.14042 1.43754 0.86453 0.81596 0.79843 0.78977 1.20023 1.21072 1.19979 1.23041 0.78244 1.00803 0.99631 1.21032 0.94980 0.95921 0.96071 0.92269 0.92385 0.92259 0.92067 0.92362 0.92465 0.92442 0.92345 0.92157 0.85555 0.85665 0.84258 0.91388 0.91440 0.90373 0.90427 0.76738 0.91929 0.91362 0.91539 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 7.13 37.16 0.26 -0.79 16 2 C -0.03 -0.26 0.85 -155.67 -0.13 -0.40 16 3 C -0.14 -1.30 8.29 37.16 0.31 -1.00 16 4 C -0.14 -1.28 8.29 37.16 0.31 -0.97 16 5 C -0.08 -0.98 4.76 -104.68 -0.50 -1.48 16 6 C -0.11 -1.12 8.97 -39.49 -0.35 -1.48 16 7 C -0.13 -1.43 10.03 -39.64 -0.40 -1.82 16 8 C -0.10 -1.42 8.07 -39.19 -0.32 -1.74 16 9 C -0.12 -1.92 5.67 -104.97 -0.60 -2.52 16 10 C 0.56 11.62 7.64 -12.33 -0.09 11.52 16 11 O -0.55 -13.24 16.94 5.32 0.09 -13.15 16 12 N -0.60 -12.61 3.32 -171.49 -0.57 -13.18 16 13 C 0.10 1.70 4.99 -2.41 -0.01 1.69 16 14 C -0.12 -2.33 6.24 -24.46 -0.15 -2.49 16 15 C 0.25 5.94 0.85 -89.93 -0.08 5.87 16 16 O -0.58 -14.45 13.07 -35.23 -0.46 -14.91 16 17 C -0.54 -14.01 8.13 -34.44 -0.28 -14.29 16 18 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 19 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 20 N -0.89 -23.81 10.96 55.43 0.61 -23.20 16 21 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.10 2.53 5.24 -3.06 -0.02 2.51 16 26 C -0.06 -0.90 8.25 -39.19 -0.32 -1.22 16 27 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 30 H 0.06 0.63 7.38 -51.93 -0.38 0.25 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.61 7.38 -51.93 -0.38 0.22 16 36 H 0.13 1.03 5.87 -52.49 -0.31 0.73 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.14 1.88 4.59 -52.48 -0.24 1.64 16 39 H 0.07 1.12 6.84 -51.93 -0.36 0.76 16 40 H 0.07 1.00 6.81 -51.93 -0.35 0.65 16 41 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.38 9.70 7.45 45.56 0.34 10.04 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.07 1.82 7.82 -51.93 -0.41 1.42 16 46 H 0.07 1.76 7.92 -51.93 -0.41 1.35 16 47 H 0.13 1.97 6.88 -52.49 -0.36 1.61 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -29.52 368.83 -8.82 -38.34 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -6.56 Total: 11.93 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -2.46 Total: -6.84 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.04 Total: -36.38 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.37 Total: -28.06 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.52 -8.82 -38.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594375111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.035 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds