Wall clock time and date at job start Tue Mar 31 2020 13:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46884 * 2 1 4 4 C 1.52994 * 109.47238 * 239.99908 * 2 1 3 5 5 C 1.50701 * 109.47168 * 119.99770 * 2 1 3 6 6 C 1.38388 * 119.92780 * 0.02562 * 5 2 1 7 7 C 1.38337 * 120.29170 * 180.02562 * 6 5 2 8 8 C 1.37975 * 120.14498 * 0.02562 * 7 6 5 9 9 C 1.39548 * 119.85580 * 359.97438 * 8 7 6 10 10 C 1.47848 * 120.14654 * 179.97438 * 9 8 7 11 11 O 1.21556 * 119.99761 * 187.87522 * 10 9 8 12 12 N 1.34774 * 119.99804 * 7.87409 * 10 9 8 13 13 C 1.47012 * 125.65023 * 354.83062 * 12 10 9 14 14 C 1.54325 * 107.40282 * 178.82873 * 13 12 10 15 15 C 1.55399 * 102.82840 * 337.97189 * 14 13 12 16 16 O 1.42892 * 110.89479 * 277.27067 * 15 14 13 17 17 C 1.50702 * 111.07030 * 153.48720 * 15 14 13 18 18 H 1.07998 * 119.99936 * 273.84776 * 17 15 14 19 19 C 1.37872 * 119.99829 * 93.84727 * 17 15 14 20 20 N 1.31519 * 119.99806 * 173.59560 * 19 17 15 21 21 Si 1.86800 * 120.00226 * 353.58828 * 19 17 15 22 22 H 1.48504 * 109.46585 * 86.49536 * 21 19 17 23 23 H 1.48495 * 109.47148 * 206.49294 * 21 19 17 24 24 H 1.48494 * 109.47281 * 326.49749 * 21 19 17 25 25 C 1.47423 * 125.64697 * 174.78849 * 12 10 9 26 26 C 1.37938 * 119.92773 * 180.27890 * 5 2 1 27 27 H 1.08999 * 109.47329 * 299.99840 * 1 2 3 28 28 H 1.08996 * 109.47189 * 60.00334 * 1 2 3 29 29 H 1.09005 * 109.46610 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46850 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47302 * 300.00218 * 3 2 1 32 32 H 1.09008 * 109.47183 * 59.99918 * 3 2 1 33 33 H 1.09000 * 109.47564 * 299.99982 * 4 2 1 34 34 H 1.09005 * 109.47337 * 60.00397 * 4 2 1 35 35 H 1.09000 * 109.47102 * 179.97438 * 4 2 1 36 36 H 1.07998 * 119.84888 * 359.97438 * 6 5 2 37 37 H 1.08004 * 119.92360 * 180.02562 * 7 6 5 38 38 H 1.08006 * 120.07315 * 179.97438 * 8 7 6 39 39 H 1.09005 * 109.88317 * 298.32367 * 13 12 10 40 40 H 1.09004 * 109.88580 * 59.33175 * 13 12 10 41 41 H 1.08999 * 110.72490 * 96.24952 * 14 13 12 42 42 H 1.09000 * 110.71930 * 219.52063 * 14 13 12 43 43 H 0.96695 * 114.00187 * 170.18485 * 16 15 14 44 44 H 0.97001 * 119.99817 * 179.97438 * 20 19 17 45 45 H 1.09005 * 110.37119 * 323.00024 * 25 12 10 46 46 H 1.08995 * 110.37015 * 85.21238 * 25 12 10 47 47 H 1.07998 * 120.07212 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.1318 -1.2362 2.1402 7 6 1.5846 -1.8892 3.2725 8 6 2.9388 -2.0199 3.5021 9 6 3.8524 -1.4920 2.5888 10 6 5.3049 -1.6279 2.8287 11 8 6.0962 -1.0469 2.1118 12 7 5.7516 -2.3958 3.8422 13 6 4.9106 -3.0640 4.8459 14 6 5.8494 -3.8505 5.7849 15 6 7.1266 -4.0363 4.9194 16 8 6.9874 -5.1529 4.0387 17 6 8.3510 -4.1845 5.7854 18 1 8.8776 -3.3071 6.1307 19 6 8.7990 -5.4402 6.1368 20 7 9.9353 -5.5754 6.7850 21 14 7.7918 -6.9494 5.6925 22 1 8.1482 -7.3962 4.3218 23 1 8.0804 -8.0391 6.6591 24 1 6.3465 -6.6125 5.7432 25 6 7.1644 -2.7056 4.1273 26 6 3.3888 -0.8305 1.4502 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6768 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 0.0707 -1.1354 1.9657 37 1 0.8765 -2.2977 3.9784 38 1 3.2911 -2.5296 4.3867 39 1 4.3530 -2.3211 5.4163 40 1 4.2195 -3.7486 4.3541 41 1 6.0721 -3.2715 6.6811 42 1 5.4140 -4.8151 6.0461 43 1 7.6889 -5.2216 3.3767 44 1 10.2503 -6.4588 7.0326 45 1 7.7200 -2.8329 3.1982 46 1 7.6117 -1.9156 4.7306 47 1 4.0906 -0.4158 0.7418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594375114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:18 Heat of formation + Delta-G solvation = -44.345128 kcal Electronic energy + Delta-G solvation = -27109.000757 eV Core-core repulsion = 23450.158088 eV Total energy + Delta-G solvation = -3658.842669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.54621 -39.26967 -37.58700 -36.35274 -34.90722 -32.40870 -31.45304 -30.61075 -30.09703 -28.34982 -27.69319 -27.46831 -25.49952 -23.99338 -22.70130 -22.13216 -20.20126 -19.87789 -19.02341 -17.58704 -16.79859 -16.55682 -15.66109 -15.52080 -15.14563 -14.92651 -14.69541 -14.59256 -14.49937 -13.94669 -13.71943 -13.56748 -13.51817 -12.84724 -12.72773 -12.66303 -12.45230 -12.20717 -12.17632 -11.96987 -11.92519 -11.78696 -11.61726 -11.24098 -11.19921 -11.07535 -10.84941 -10.66542 -10.51422 -10.29516 -10.26167 -9.59676 -9.27877 -8.99446 -8.80407 -8.70341 -8.56450 -8.14984 -6.22838 -4.35266 0.89949 1.30099 3.01405 3.30787 3.42705 3.49997 3.66854 3.87948 4.33465 4.46037 4.48918 4.65244 4.73836 4.89154 4.96810 4.97625 5.05304 5.08202 5.18838 5.27355 5.35286 5.38522 5.44552 5.46844 5.50779 5.58992 5.65000 5.65628 5.69103 5.74390 5.84215 5.87272 5.97684 5.99901 6.02425 6.06355 6.32973 6.34705 6.41120 6.46205 6.49708 6.65371 6.66244 6.85910 6.98940 7.40310 7.86292 8.07592 8.43532 8.57193 8.77298 9.37973 10.85942 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.003070 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.253770 B = 9119.511992 C = 9414.758421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.085 4.085 6 C -0.103 4.103 7 C -0.128 4.128 8 C -0.128 4.128 9 C -0.121 4.121 10 C 0.565 3.435 11 O -0.549 6.549 12 N -0.602 5.602 13 C 0.090 3.910 14 C -0.124 4.124 15 C 0.220 3.780 16 O -0.558 6.558 17 C -0.553 4.553 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.887 5.887 21 Si 0.954 3.046 22 H -0.294 1.294 23 H -0.327 1.327 24 H -0.271 1.271 25 C 0.090 3.910 26 C -0.058 4.058 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.163 0.837 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.372 0.628 44 H 0.267 0.733 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.046 8.863 -10.231 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.198 4.198 5 C -0.085 4.085 6 C -0.121 4.121 7 C -0.146 4.146 8 C -0.145 4.145 9 C -0.124 4.124 10 C 0.355 3.645 11 O -0.429 6.429 12 N -0.334 5.334 13 C -0.032 4.032 14 C -0.162 4.162 15 C 0.180 3.820 16 O -0.366 6.366 17 C -0.590 4.590 18 H 0.100 0.900 19 C -0.132 4.132 20 N -0.521 5.521 21 Si 0.790 3.210 22 H -0.222 1.222 23 H -0.259 1.259 24 H -0.197 1.197 25 C -0.032 4.032 26 C -0.077 4.077 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.179 0.821 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.220 0.780 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.020 9.029 -10.215 24.221 hybrid contribution 0.072 -0.712 -0.416 0.828 sum -19.947 8.317 -10.631 24.085 Atomic orbital electron populations 1.21962 0.94167 1.01952 1.01936 1.19485 0.95592 0.95131 0.92594 1.21914 1.01601 0.94446 1.01805 1.21913 1.01581 1.00239 0.96052 1.19745 0.92906 0.99463 0.96375 1.21359 0.99755 0.97081 0.93896 1.21145 0.95519 1.00038 0.97854 1.22870 0.93361 0.97775 1.00539 1.19951 0.92987 1.02318 0.97164 1.17959 0.87849 0.78843 0.79840 1.90737 1.57262 1.47088 1.47828 1.48433 1.09494 1.47886 1.27545 1.22584 0.94515 0.95645 0.90459 1.23092 0.95404 1.00020 0.97728 1.20297 0.94154 0.80919 0.86671 1.86110 1.53854 1.48906 1.47746 1.21098 1.10100 0.94969 1.32873 0.89998 1.25136 0.94473 1.00158 0.93413 1.69969 1.19573 1.24395 1.38186 0.85589 0.80642 0.79039 0.75732 1.22163 1.25883 1.19696 1.23171 0.80116 0.99568 1.00354 1.21052 0.94996 0.95756 0.95928 0.92266 0.92325 0.92253 0.92115 0.92310 0.92476 0.92447 0.92303 0.92146 0.85539 0.85641 0.82065 0.91349 0.90923 0.89404 0.89962 0.77956 0.92344 0.91031 0.90733 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 7.13 37.16 0.26 -0.73 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.19 8.28 37.16 0.31 -0.89 16 4 C -0.14 -1.21 8.29 37.15 0.31 -0.91 16 5 C -0.08 -0.94 4.76 -104.68 -0.50 -1.44 16 6 C -0.10 -1.04 8.97 -39.49 -0.35 -1.40 16 7 C -0.13 -1.36 10.03 -39.64 -0.40 -1.76 16 8 C -0.13 -1.65 8.59 -39.19 -0.34 -1.98 16 9 C -0.12 -1.85 5.87 -104.97 -0.62 -2.47 16 10 C 0.57 10.47 7.81 -12.33 -0.10 10.37 16 11 O -0.55 -11.75 16.67 5.32 0.09 -11.66 16 12 N -0.60 -10.95 3.33 -175.10 -0.58 -11.53 16 13 C 0.09 1.42 4.87 -3.07 -0.01 1.40 16 14 C -0.12 -2.31 5.96 -24.76 -0.15 -2.45 16 15 C 0.22 4.72 0.70 -89.49 -0.06 4.66 16 16 O -0.56 -11.90 8.47 -35.23 -0.30 -12.20 16 17 C -0.55 -14.28 8.90 -34.44 -0.31 -14.59 16 18 H 0.08 2.31 8.00 -52.49 -0.42 1.89 16 19 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 20 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 21 Si 0.95 22.92 24.84 -169.99 -4.22 18.70 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.33 -8.11 7.11 56.52 0.40 -7.71 16 24 H -0.27 -6.32 5.56 56.52 0.31 -6.01 16 25 C 0.09 1.81 6.06 -2.53 -0.02 1.79 16 26 C -0.06 -0.80 8.25 -39.18 -0.32 -1.12 16 27 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 30 H 0.06 0.57 7.37 -51.93 -0.38 0.19 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.57 7.40 -51.93 -0.38 0.19 16 36 H 0.13 0.99 5.87 -52.49 -0.31 0.68 16 37 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.16 1.95 2.77 -56.99 -0.16 1.79 16 39 H 0.07 0.90 6.80 -51.93 -0.35 0.54 16 40 H 0.07 1.07 6.65 -51.93 -0.35 0.72 16 41 H 0.09 1.59 8.03 -51.93 -0.42 1.17 16 42 H 0.08 1.55 6.82 -51.93 -0.35 1.19 16 43 H 0.37 7.20 8.88 45.56 0.40 7.60 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 46 H 0.07 1.53 7.99 -51.93 -0.41 1.12 16 47 H 0.13 1.86 6.70 -52.49 -0.35 1.51 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -31.52 361.33 -7.76 -39.28 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.44 Total: 7.05 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.52 Total: -10.00 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.19 Total: -36.62 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.21 Total: -23.86 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.22 Total: 18.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.52 -7.76 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594375114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.066 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds