Wall clock time and date at job start Tue Mar 31 2020 13:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46884 * 2 1 4 4 C 1.52994 * 109.47238 * 239.99908 * 2 1 3 5 5 C 1.50701 * 109.47168 * 119.99770 * 2 1 3 6 6 C 1.38388 * 119.92780 * 0.02562 * 5 2 1 7 7 C 1.38337 * 120.29170 * 180.02562 * 6 5 2 8 8 C 1.37975 * 120.14498 * 0.02562 * 7 6 5 9 9 C 1.39548 * 119.85580 * 359.97438 * 8 7 6 10 10 C 1.47848 * 120.14654 * 179.97438 * 9 8 7 11 11 O 1.21556 * 119.99761 * 187.87522 * 10 9 8 12 12 N 1.34774 * 119.99804 * 7.87409 * 10 9 8 13 13 C 1.47012 * 125.65023 * 354.83062 * 12 10 9 14 14 C 1.54325 * 107.40282 * 178.82873 * 13 12 10 15 15 C 1.55399 * 102.82840 * 337.97189 * 14 13 12 16 16 O 1.42892 * 110.89479 * 277.27067 * 15 14 13 17 17 C 1.50702 * 111.07030 * 153.48720 * 15 14 13 18 18 H 1.07998 * 119.99936 * 273.84776 * 17 15 14 19 19 C 1.37872 * 119.99829 * 93.84727 * 17 15 14 20 20 N 1.31519 * 119.99806 * 173.59560 * 19 17 15 21 21 Si 1.86800 * 120.00226 * 353.58828 * 19 17 15 22 22 H 1.48504 * 109.46585 * 86.49536 * 21 19 17 23 23 H 1.48495 * 109.47148 * 206.49294 * 21 19 17 24 24 H 1.48494 * 109.47281 * 326.49749 * 21 19 17 25 25 C 1.47423 * 125.64697 * 174.78849 * 12 10 9 26 26 C 1.37938 * 119.92773 * 180.27890 * 5 2 1 27 27 H 1.08999 * 109.47329 * 299.99840 * 1 2 3 28 28 H 1.08996 * 109.47189 * 60.00334 * 1 2 3 29 29 H 1.09005 * 109.46610 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46850 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47302 * 300.00218 * 3 2 1 32 32 H 1.09008 * 109.47183 * 59.99918 * 3 2 1 33 33 H 1.09000 * 109.47564 * 299.99982 * 4 2 1 34 34 H 1.09005 * 109.47337 * 60.00397 * 4 2 1 35 35 H 1.09000 * 109.47102 * 179.97438 * 4 2 1 36 36 H 1.07998 * 119.84888 * 359.97438 * 6 5 2 37 37 H 1.08004 * 119.92360 * 180.02562 * 7 6 5 38 38 H 1.08006 * 120.07315 * 179.97438 * 8 7 6 39 39 H 1.09005 * 109.88317 * 298.32367 * 13 12 10 40 40 H 1.09004 * 109.88580 * 59.33175 * 13 12 10 41 41 H 1.08999 * 110.72490 * 96.24952 * 14 13 12 42 42 H 1.09000 * 110.71930 * 219.52063 * 14 13 12 43 43 H 0.96695 * 114.00187 * 170.18485 * 16 15 14 44 44 H 0.97001 * 119.99817 * 179.97438 * 20 19 17 45 45 H 1.09005 * 110.37119 * 323.00024 * 25 12 10 46 46 H 1.08995 * 110.37015 * 85.21238 * 25 12 10 47 47 H 1.07998 * 120.07212 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.1318 -1.2362 2.1402 7 6 1.5846 -1.8892 3.2725 8 6 2.9388 -2.0199 3.5021 9 6 3.8524 -1.4920 2.5888 10 6 5.3049 -1.6279 2.8287 11 8 6.0962 -1.0469 2.1118 12 7 5.7516 -2.3958 3.8422 13 6 4.9106 -3.0640 4.8459 14 6 5.8494 -3.8505 5.7849 15 6 7.1266 -4.0363 4.9194 16 8 6.9874 -5.1529 4.0387 17 6 8.3510 -4.1845 5.7854 18 1 8.8776 -3.3071 6.1307 19 6 8.7990 -5.4402 6.1368 20 7 9.9353 -5.5754 6.7850 21 14 7.7918 -6.9494 5.6925 22 1 8.1482 -7.3962 4.3218 23 1 8.0804 -8.0391 6.6591 24 1 6.3465 -6.6125 5.7432 25 6 7.1644 -2.7056 4.1273 26 6 3.3888 -0.8305 1.4502 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6768 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 0.0707 -1.1354 1.9657 37 1 0.8765 -2.2977 3.9784 38 1 3.2911 -2.5296 4.3867 39 1 4.3530 -2.3211 5.4163 40 1 4.2195 -3.7486 4.3541 41 1 6.0721 -3.2715 6.6811 42 1 5.4140 -4.8151 6.0461 43 1 7.6889 -5.2216 3.3767 44 1 10.2503 -6.4588 7.0326 45 1 7.7200 -2.8329 3.1982 46 1 7.6117 -1.9156 4.7306 47 1 4.0906 -0.4158 0.7418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594375114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:17 Heat of formation + Delta-G solvation = -64.912382 kcal Electronic energy + Delta-G solvation = -27109.892620 eV Core-core repulsion = 23450.158088 eV Total energy + Delta-G solvation = -3659.734532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.74825 -40.40693 -39.11860 -37.25891 -36.44336 -34.47069 -32.60472 -31.82022 -31.29300 -29.80034 -28.40118 -28.13648 -27.20165 -25.28876 -23.71317 -23.30696 -21.61890 -21.24007 -20.11390 -19.44134 -17.90633 -17.64296 -17.21557 -17.04419 -16.73404 -16.30579 -15.82358 -15.71688 -15.27839 -15.16916 -14.89539 -14.83620 -14.55398 -14.37915 -14.07092 -13.86174 -13.68155 -13.56612 -13.34712 -12.93138 -12.86960 -12.76905 -12.71025 -12.54981 -12.53221 -12.24848 -12.01480 -11.98831 -11.84137 -11.66588 -11.40780 -11.22174 -10.97507 -10.64163 -10.41231 -10.00005 -9.69628 -9.60970 -8.34990 -6.49196 -0.12118 0.40622 1.50793 1.53968 1.75177 1.78291 1.91934 2.45213 2.85270 2.95553 3.36505 3.50055 3.59085 3.74788 3.84092 4.02706 4.10535 4.11158 4.15041 4.22309 4.32899 4.36240 4.42062 4.46872 4.54153 4.75058 4.75418 4.76292 4.83920 4.89546 4.93819 4.97974 5.03033 5.03737 5.13267 5.16243 5.16872 5.24215 5.32247 5.35022 5.40558 5.42699 5.50427 5.52915 5.65195 5.97764 6.02722 6.45636 6.56851 6.85908 7.01483 7.28269 8.77971 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.003070 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.253770 B = 9119.511992 C = 9414.758421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.029 4.029 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.084 4.084 6 C -0.093 4.093 7 C -0.121 4.121 8 C -0.130 4.130 9 C -0.147 4.147 10 C 0.560 3.440 11 O -0.593 6.593 12 N -0.604 5.604 13 C 0.095 3.905 14 C -0.122 4.122 15 C 0.218 3.782 16 O -0.557 6.557 17 C -0.549 4.549 18 H 0.044 0.956 19 C 0.024 3.976 20 N -0.937 5.937 21 Si 1.014 2.986 22 H -0.288 1.288 23 H -0.338 1.338 24 H -0.253 1.253 25 C 0.096 3.904 26 C -0.073 4.073 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.170 0.830 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.379 0.621 44 H 0.268 0.732 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.911 8.593 -10.840 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.197 4.197 4 C -0.198 4.198 5 C -0.085 4.085 6 C -0.111 4.111 7 C -0.139 4.139 8 C -0.148 4.148 9 C -0.150 4.150 10 C 0.352 3.648 11 O -0.476 6.476 12 N -0.335 5.335 13 C -0.026 4.026 14 C -0.160 4.160 15 C 0.177 3.823 16 O -0.366 6.366 17 C -0.587 4.587 18 H 0.062 0.938 19 C -0.176 4.176 20 N -0.574 5.574 21 Si 0.847 3.153 22 H -0.215 1.215 23 H -0.271 1.271 24 H -0.179 1.179 25 C -0.027 4.027 26 C -0.092 4.092 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.187 0.813 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.229 0.771 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.916 8.769 -10.828 28.548 hybrid contribution 1.593 -0.507 -0.273 1.694 sum -23.323 8.262 -11.101 27.119 Atomic orbital electron populations 1.21954 0.92054 1.02735 1.03003 1.19563 0.97188 0.94689 0.91458 1.21911 1.00445 0.94722 1.02642 1.21912 1.00438 1.00511 0.96902 1.20025 0.91843 0.99116 0.97472 1.21790 1.01155 0.95224 0.92917 1.21551 0.94963 0.98975 0.98364 1.22942 0.94067 0.97661 1.00115 1.19787 0.91009 1.05141 0.99070 1.18605 0.89318 0.77884 0.78989 1.90701 1.58738 1.48852 1.49282 1.48444 1.08672 1.48127 1.28221 1.22765 0.93732 0.96458 0.89603 1.23018 0.94181 1.00937 0.97820 1.20185 0.94002 0.81461 0.86621 1.86069 1.54118 1.48659 1.47761 1.21315 1.11250 0.93501 1.32618 0.93771 1.25904 0.95182 1.03019 0.93489 1.70090 1.21650 1.24991 1.40681 0.84613 0.80036 0.75388 0.75229 1.21509 1.27092 1.17851 1.22848 0.81806 0.98656 0.99354 1.21028 0.96172 0.96432 0.95563 0.91466 0.91136 0.91543 0.94016 0.90680 0.92406 0.92484 0.90667 0.94029 0.82331 0.82119 0.81300 0.87904 0.88892 0.89288 0.89426 0.77143 0.92362 0.92255 0.92004 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 7.13 71.98 0.51 -0.88 16 2 C -0.03 -0.44 0.85 -52.93 -0.05 -0.49 16 3 C -0.14 -2.18 8.28 71.98 0.60 -1.59 16 4 C -0.14 -2.22 8.29 71.98 0.60 -1.62 16 5 C -0.08 -1.69 4.76 -19.90 -0.09 -1.78 16 6 C -0.09 -1.48 8.97 22.33 0.20 -1.28 16 7 C -0.12 -2.00 10.03 22.23 0.22 -1.78 16 8 C -0.13 -2.93 8.59 22.52 0.19 -2.73 16 9 C -0.15 -4.35 5.87 -20.09 -0.12 -4.47 16 10 C 0.56 20.94 7.81 86.79 0.68 21.62 16 11 O -0.59 -26.54 16.67 -3.89 -0.06 -26.60 16 12 N -0.60 -21.63 3.33 -826.18 -2.75 -24.38 16 13 C 0.10 2.73 4.87 86.73 0.42 3.15 16 14 C -0.12 -4.27 5.96 31.87 0.19 -4.08 16 15 C 0.22 9.28 0.70 -10.06 -0.01 9.28 16 16 O -0.56 -22.98 8.47 -148.98 -1.26 -24.24 16 17 C -0.55 -29.10 8.90 25.60 0.23 -28.88 16 18 H 0.04 2.62 8.00 -2.91 -0.02 2.60 16 19 C 0.02 1.32 5.46 84.65 0.46 1.79 16 20 N -0.94 -56.41 13.96 21.45 0.30 -56.11 16 21 Si 1.01 46.96 24.84 68.60 1.70 48.66 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.34 -16.23 7.11 99.48 0.71 -15.53 16 24 H -0.25 -10.91 5.56 99.48 0.55 -10.36 16 25 C 0.10 3.96 6.06 86.86 0.53 4.49 16 26 C -0.07 -1.98 8.25 22.53 0.19 -1.79 16 27 H 0.07 0.58 7.51 -2.39 -0.02 0.56 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.59 7.51 -2.38 -0.02 0.57 16 30 H 0.04 0.80 7.37 -2.39 -0.02 0.78 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.04 0.80 7.40 -2.39 -0.02 0.78 16 36 H 0.16 1.54 5.87 -2.91 -0.02 1.52 16 37 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.17 3.39 2.77 -7.14 -0.02 3.37 16 39 H 0.10 2.30 6.80 -2.38 -0.02 2.28 16 40 H 0.09 2.36 6.65 -2.38 -0.02 2.34 16 41 H 0.09 3.09 8.03 -2.39 -0.02 3.07 16 42 H 0.09 3.01 6.82 -2.39 -0.02 2.99 16 43 H 0.38 14.39 8.88 -74.06 -0.66 13.74 16 44 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.06 2.54 8.09 -2.38 -0.02 2.52 16 46 H 0.06 2.66 7.99 -2.39 -0.02 2.64 16 47 H 0.11 3.39 6.70 -2.91 -0.02 3.37 16 Total: -1.00 -71.45 361.33 2.84 -68.61 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.16 Total: 25.10 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.75 Total: -11.04 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -2.45 Total: -80.49 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -1.33 Total: -50.84 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.70 Total: 48.66 kcal Total: -71.45 2.84 -68.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594375114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.696 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds