Wall clock time and date at job start Tue Mar 31 2020 12:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00146 * 2 1 4 4 N 1.46897 * 109.46991 * 124.10759 * 3 2 1 5 5 C 1.46905 * 111.00367 * 300.60969 * 4 3 2 6 6 C 1.50704 * 109.46764 * 288.34754 * 5 4 3 7 7 H 1.08001 * 120.00335 * 356.33394 * 6 5 4 8 8 C 1.37876 * 119.99728 * 176.33052 * 6 5 4 9 9 N 1.31516 * 120.00274 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00022 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47305 * 89.99739 * 10 8 6 12 12 H 1.48498 * 109.46954 * 209.99756 * 10 8 6 13 13 H 1.48500 * 109.46944 * 329.99548 * 10 8 6 14 14 C 1.46893 * 111.00202 * 64.56373 * 4 3 2 15 15 C 1.50708 * 109.47233 * 66.04612 * 14 4 3 16 16 C 1.39207 * 115.71686 * 260.02146 * 15 14 4 17 17 C 1.37928 * 128.92910 * 179.68881 * 16 15 14 18 18 C 1.39280 * 129.01846 * 0.60957 * 17 16 15 19 19 C 1.50695 * 115.62621 * 179.69672 * 18 17 16 20 20 C 1.53000 * 109.46814 * 239.75205 * 19 18 17 21 21 C 1.52996 * 109.47263 * 119.74989 * 19 18 17 22 22 C 1.37709 * 128.75196 * 359.40922 * 18 17 16 23 23 C 1.40614 * 128.36628 * 0.26009 * 22 18 17 24 24 O 1.22357 * 115.92345 * 180.02562 * 23 22 18 25 25 C 1.38207 * 115.71820 * 79.99828 * 15 14 4 26 26 O 1.35485 * 115.88933 * 0.02562 * 25 15 14 27 27 H 1.07999 * 119.99847 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.00037 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.00037 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46588 * 4.10948 * 3 2 1 31 31 H 1.08997 * 109.47210 * 244.10808 * 3 2 1 32 32 H 1.09000 * 109.46756 * 48.34576 * 5 4 3 33 33 H 1.08998 * 109.47479 * 168.34551 * 5 4 3 34 34 H 0.96994 * 120.00193 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47333 * 306.04905 * 14 4 3 36 36 H 1.09000 * 109.47395 * 186.04096 * 14 4 3 37 37 H 1.08006 * 115.53497 * 0.02562 * 16 15 14 38 38 H 1.08006 * 115.49792 * 180.30883 * 17 16 15 39 39 H 1.08997 * 109.47091 * 359.74312 * 19 18 17 40 40 H 1.09002 * 109.47431 * 59.99964 * 20 19 18 41 41 H 1.09003 * 109.47241 * 299.99312 * 20 19 18 42 42 H 1.09005 * 109.47029 * 179.97438 * 20 19 18 43 43 H 1.09005 * 109.46882 * 179.97438 * 21 19 18 44 44 H 1.08996 * 109.47065 * 299.99721 * 21 19 18 45 45 H 1.08998 * 109.46915 * 60.00256 * 21 19 18 46 46 H 1.07993 * 115.81488 * 180.24514 * 22 18 17 47 47 H 0.96702 * 113.99977 * 270.02010 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9809 1.3408 1.1467 5 6 2.2472 1.2069 2.4124 6 6 1.4783 2.4743 2.6838 7 1 1.5759 3.3184 2.0171 8 6 0.6503 2.5561 3.7831 9 7 -0.0204 3.6623 4.0203 10 14 0.4820 1.0964 4.9365 11 1 1.5040 1.1929 6.0095 12 1 -0.8737 1.0981 5.5426 13 1 0.6818 -0.1623 4.1743 14 6 4.0154 0.3049 1.0258 15 6 4.9021 0.6156 -0.1525 16 6 4.6301 -0.0962 -1.3175 17 6 5.2587 -0.0255 -2.5431 18 6 6.3360 0.7674 -2.9316 19 6 6.7901 0.5962 -4.3583 20 6 8.2507 0.1408 -4.3773 21 6 6.6618 1.9293 -5.0978 22 6 7.0387 1.6904 -2.1897 23 6 6.8454 2.0603 -0.8469 24 8 7.6075 2.9131 -0.4120 25 6 5.8777 1.5699 0.0662 26 8 5.9139 2.1044 1.3106 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3574 2.1323 0.0736 31 1 2.6338 1.3954 -0.9245 32 1 1.5537 0.3688 2.3433 33 1 2.9525 1.0288 3.2242 34 1 -0.6032 3.7198 4.7935 35 1 3.5421 -0.6658 0.8783 36 1 4.6151 0.2823 1.9357 37 1 3.8106 -0.7969 -1.2543 38 1 4.8635 -0.6790 -3.3068 39 1 6.1696 -0.1532 -4.8497 40 1 8.3421 -0.8090 -3.8504 41 1 8.8713 0.8901 -3.8859 42 1 8.5791 0.0165 -5.4092 43 1 6.9908 1.8056 -6.1296 44 1 5.6213 2.2537 -5.0843 45 1 7.2825 2.6786 -4.6064 46 1 7.8420 2.1952 -2.7056 47 1 5.3628 2.8919 1.4166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596202145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:38 Heat of formation + Delta-G solvation = -1.831200 kcal Electronic energy + Delta-G solvation = -27093.078342 eV Core-core repulsion = 23436.079215 eV Total energy + Delta-G solvation = -3656.999127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.42176 -38.27613 -38.03649 -36.57641 -34.88829 -32.87886 -32.38874 -31.01774 -30.20440 -28.02020 -27.49043 -26.69126 -25.46107 -24.45013 -22.28291 -21.13798 -20.86831 -19.37441 -18.91418 -18.68958 -16.99170 -16.69848 -16.28140 -15.55089 -15.14253 -14.86311 -14.67189 -14.34832 -14.20461 -14.03497 -13.99589 -13.82131 -13.70488 -13.36591 -13.16631 -12.56975 -12.51417 -12.35482 -11.97381 -11.78539 -11.67276 -11.46005 -11.40415 -11.21048 -11.13083 -11.08802 -10.95351 -10.82920 -10.54945 -10.45777 -9.96848 -9.44774 -9.42491 -9.32859 -8.92847 -8.58970 -7.84871 -7.53408 -6.08024 -4.05242 -0.09210 0.59454 2.66102 2.97243 3.26228 3.33659 3.34909 3.45066 3.99421 4.22109 4.38136 4.39250 4.56331 4.63721 4.79499 4.81825 4.90109 5.01040 5.13010 5.18740 5.24486 5.29393 5.32437 5.45889 5.48773 5.49468 5.54493 5.61193 5.73805 5.82382 5.87148 5.88477 5.92366 6.04603 6.19684 6.23556 6.28092 6.32783 6.39377 6.51025 6.75755 6.91586 6.97831 7.14471 7.53891 7.69057 7.76253 7.89982 8.05021 8.59694 9.00233 9.53859 11.05008 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.003543 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.522679 B = 7901.363398 C = 8633.742613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.189 4.189 3 C 0.086 3.914 4 N -0.513 5.513 5 C 0.159 3.841 6 C -0.504 4.504 7 H 0.080 0.920 8 C 0.071 3.929 9 N -0.900 5.900 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.072 3.928 15 C -0.063 4.063 16 C -0.051 4.051 17 C -0.125 4.125 18 C 0.001 3.999 19 C -0.075 4.075 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.195 4.195 23 C 0.367 3.633 24 O -0.499 6.499 25 C 0.091 3.909 26 O -0.479 6.479 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.001 0.999 33 H 0.023 0.977 34 H 0.263 0.737 35 H 0.040 0.960 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.134 0.866 47 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.144 -10.479 -18.130 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.209 4.209 3 C -0.042 4.042 4 N -0.235 5.235 5 C 0.034 3.966 6 C -0.543 4.543 7 H 0.098 0.902 8 C -0.131 4.131 9 N -0.539 5.539 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.056 4.056 15 C -0.065 4.065 16 C -0.070 4.070 17 C -0.143 4.143 18 C 0.000 4.000 19 C -0.093 4.093 20 C -0.205 4.205 21 C -0.205 4.205 22 C -0.214 4.214 23 C 0.259 3.741 24 O -0.387 6.387 25 C 0.043 3.957 26 O -0.292 6.292 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.019 0.981 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.152 0.848 47 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 10.999 -9.943 -17.624 23.032 hybrid contribution -1.147 -1.335 0.702 1.895 sum 9.852 -11.278 -16.923 22.597 Atomic orbital electron populations 1.23815 0.96084 1.01521 0.99750 1.23528 0.96796 0.99570 1.00967 1.21339 0.94836 0.94827 0.93215 1.62306 1.13376 1.44022 1.03801 1.20264 0.92742 0.97732 0.85899 1.20939 1.24038 0.98707 1.10596 0.90224 1.24855 0.95353 0.95503 0.97377 1.69882 1.29011 1.26277 1.28689 0.86934 0.77616 0.83920 0.81739 1.20170 1.21286 1.19257 1.21377 0.93697 0.94236 0.96254 1.20555 0.94448 0.95852 0.95669 1.21242 0.97947 0.96736 0.91030 1.21138 0.96263 0.99890 0.96995 1.20120 0.92285 0.91972 0.95655 1.20577 0.97935 0.99029 0.91768 1.21943 0.94537 1.01827 1.02168 1.21944 1.02612 0.95931 1.00041 1.22837 1.02414 1.00382 0.95758 1.17924 0.84700 0.83672 0.87806 1.90908 1.41225 1.29248 1.77297 1.20644 0.93799 0.94679 0.86550 1.84500 1.71403 1.48379 1.24955 0.89563 0.87992 0.88683 0.89044 0.91873 0.98142 0.95902 0.92675 0.94238 0.88908 0.85565 0.85803 0.89819 0.92269 0.91971 0.92018 0.92021 0.92107 0.91967 0.84833 0.73092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 14.32 29.01 0.42 -2.27 16 2 C -0.19 -2.91 7.41 -36.02 -0.27 -3.17 16 3 C 0.09 1.44 5.37 -4.97 -0.03 1.41 16 4 N -0.51 -9.48 4.65 -238.96 -1.11 -10.59 16 5 C 0.16 3.58 3.67 -4.97 -0.02 3.57 16 6 C -0.50 -13.54 9.10 -34.44 -0.31 -13.85 16 7 H 0.08 2.34 7.85 -52.49 -0.41 1.93 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 10 Si 0.87 21.04 27.54 -169.99 -4.68 16.36 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.23 6.44 56.52 0.36 -5.86 16 14 C 0.07 1.12 4.16 -4.98 -0.02 1.10 16 15 C -0.06 -0.86 4.75 -104.27 -0.50 -1.36 16 16 C -0.05 -0.55 7.96 -39.34 -0.31 -0.86 16 17 C -0.12 -1.12 9.26 -39.31 -0.36 -1.48 16 18 C 0.00 0.01 4.98 -104.43 -0.52 -0.52 16 19 C -0.07 -0.52 2.92 -91.78 -0.27 -0.79 16 20 C -0.15 -0.96 8.95 37.16 0.33 -0.63 16 21 C -0.15 -1.01 8.95 37.16 0.33 -0.68 16 22 C -0.19 -2.35 8.07 -38.88 -0.31 -2.67 16 23 C 0.37 5.75 6.73 -37.32 -0.25 5.50 16 24 O -0.50 -9.57 16.99 -16.56 -0.28 -9.85 16 25 C 0.09 1.42 6.70 -38.23 -0.26 1.16 16 26 O -0.48 -8.22 11.12 -39.30 -0.44 -8.66 16 27 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.10 1.68 7.84 -52.48 -0.41 1.27 16 29 H 0.10 1.30 6.55 -52.48 -0.34 0.96 16 30 H 0.09 1.78 7.00 -51.93 -0.36 1.41 16 31 H 0.06 0.93 6.30 -51.93 -0.33 0.61 16 32 H 0.00 0.02 5.50 -51.93 -0.29 -0.27 16 33 H 0.02 0.53 7.43 -51.93 -0.39 0.14 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.04 0.56 5.82 -51.93 -0.30 0.26 16 36 H 0.09 1.55 7.08 -51.93 -0.37 1.18 16 37 H 0.13 1.16 7.32 -52.48 -0.38 0.78 16 38 H 0.12 0.78 7.43 -52.48 -0.39 0.39 16 39 H 0.08 0.47 7.42 -51.93 -0.39 0.08 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.45 6.91 -51.93 -0.36 0.09 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.47 6.91 -51.93 -0.36 0.11 16 46 H 0.13 1.50 5.86 -52.49 -0.31 1.19 16 47 H 0.41 6.52 9.06 45.56 0.41 6.94 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -31.99 374.89 -8.79 -40.78 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.26 Total: 6.06 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.44 Total: -13.64 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.34 Total: -36.71 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.72 Total: -18.51 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.68 Total: 16.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.99 -8.79 -40.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596202145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.953 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds