Wall clock time and date at job start Tue Mar 31 2020 12:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00146 * 2 1 4 4 N 1.46897 * 109.46991 * 124.10759 * 3 2 1 5 5 C 1.46905 * 111.00367 * 300.60969 * 4 3 2 6 6 C 1.50704 * 109.46764 * 288.34754 * 5 4 3 7 7 H 1.08001 * 120.00335 * 356.33394 * 6 5 4 8 8 C 1.37876 * 119.99728 * 176.33052 * 6 5 4 9 9 N 1.31516 * 120.00274 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00022 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47305 * 89.99739 * 10 8 6 12 12 H 1.48498 * 109.46954 * 209.99756 * 10 8 6 13 13 H 1.48500 * 109.46944 * 329.99548 * 10 8 6 14 14 C 1.46893 * 111.00202 * 64.56373 * 4 3 2 15 15 C 1.50708 * 109.47233 * 66.04612 * 14 4 3 16 16 C 1.39207 * 115.71686 * 260.02146 * 15 14 4 17 17 C 1.37928 * 128.92910 * 179.68881 * 16 15 14 18 18 C 1.39280 * 129.01846 * 0.60957 * 17 16 15 19 19 C 1.50695 * 115.62621 * 179.69672 * 18 17 16 20 20 C 1.53000 * 109.46814 * 239.75205 * 19 18 17 21 21 C 1.52996 * 109.47263 * 119.74989 * 19 18 17 22 22 C 1.37709 * 128.75196 * 359.40922 * 18 17 16 23 23 C 1.40614 * 128.36628 * 0.26009 * 22 18 17 24 24 O 1.22357 * 115.92345 * 180.02562 * 23 22 18 25 25 C 1.38207 * 115.71820 * 79.99828 * 15 14 4 26 26 O 1.35485 * 115.88933 * 0.02562 * 25 15 14 27 27 H 1.07999 * 119.99847 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.00037 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.00037 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46588 * 4.10948 * 3 2 1 31 31 H 1.08997 * 109.47210 * 244.10808 * 3 2 1 32 32 H 1.09000 * 109.46756 * 48.34576 * 5 4 3 33 33 H 1.08998 * 109.47479 * 168.34551 * 5 4 3 34 34 H 0.96994 * 120.00193 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47333 * 306.04905 * 14 4 3 36 36 H 1.09000 * 109.47395 * 186.04096 * 14 4 3 37 37 H 1.08006 * 115.53497 * 0.02562 * 16 15 14 38 38 H 1.08006 * 115.49792 * 180.30883 * 17 16 15 39 39 H 1.08997 * 109.47091 * 359.74312 * 19 18 17 40 40 H 1.09002 * 109.47431 * 59.99964 * 20 19 18 41 41 H 1.09003 * 109.47241 * 299.99312 * 20 19 18 42 42 H 1.09005 * 109.47029 * 179.97438 * 20 19 18 43 43 H 1.09005 * 109.46882 * 179.97438 * 21 19 18 44 44 H 1.08996 * 109.47065 * 299.99721 * 21 19 18 45 45 H 1.08998 * 109.46915 * 60.00256 * 21 19 18 46 46 H 1.07993 * 115.81488 * 180.24514 * 22 18 17 47 47 H 0.96702 * 113.99977 * 270.02010 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9809 1.3408 1.1467 5 6 2.2472 1.2069 2.4124 6 6 1.4783 2.4743 2.6838 7 1 1.5759 3.3184 2.0171 8 6 0.6503 2.5561 3.7831 9 7 -0.0204 3.6623 4.0203 10 14 0.4820 1.0964 4.9365 11 1 1.5040 1.1929 6.0095 12 1 -0.8737 1.0981 5.5426 13 1 0.6818 -0.1623 4.1743 14 6 4.0154 0.3049 1.0258 15 6 4.9021 0.6156 -0.1525 16 6 4.6301 -0.0962 -1.3175 17 6 5.2587 -0.0255 -2.5431 18 6 6.3360 0.7674 -2.9316 19 6 6.7901 0.5962 -4.3583 20 6 8.2507 0.1408 -4.3773 21 6 6.6618 1.9293 -5.0978 22 6 7.0387 1.6904 -2.1897 23 6 6.8454 2.0603 -0.8469 24 8 7.6075 2.9131 -0.4120 25 6 5.8777 1.5699 0.0662 26 8 5.9139 2.1044 1.3106 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3574 2.1323 0.0736 31 1 2.6338 1.3954 -0.9245 32 1 1.5537 0.3688 2.3433 33 1 2.9525 1.0288 3.2242 34 1 -0.6032 3.7198 4.7935 35 1 3.5421 -0.6658 0.8783 36 1 4.6151 0.2823 1.9357 37 1 3.8106 -0.7969 -1.2543 38 1 4.8635 -0.6790 -3.3068 39 1 6.1696 -0.1532 -4.8497 40 1 8.3421 -0.8090 -3.8504 41 1 8.8713 0.8901 -3.8859 42 1 8.5791 0.0165 -5.4092 43 1 6.9908 1.8056 -6.1296 44 1 5.6213 2.2537 -5.0843 45 1 7.2825 2.6786 -4.6064 46 1 7.8420 2.1952 -2.7056 47 1 5.3628 2.8919 1.4166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596202145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:35 Heat of formation + Delta-G solvation = -22.691886 kcal Electronic energy + Delta-G solvation = -27093.982929 eV Core-core repulsion = 23436.079215 eV Total energy + Delta-G solvation = -3657.903714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.52625 -39.57799 -38.90574 -37.86616 -35.87690 -34.73996 -33.76712 -32.14705 -31.25831 -29.74133 -27.99059 -27.94447 -26.48488 -25.82240 -23.67889 -22.47388 -21.78819 -20.55636 -20.08421 -19.72330 -18.85069 -18.03327 -17.30881 -16.84913 -16.40216 -16.15479 -15.94028 -15.66901 -15.52801 -15.14305 -14.97806 -14.80753 -14.64004 -14.52068 -14.24689 -14.19870 -13.58552 -13.30495 -13.11350 -13.05850 -12.87105 -12.56989 -12.44471 -12.39288 -12.30752 -12.24008 -12.12912 -11.90974 -11.85679 -11.70896 -11.65349 -11.46235 -10.75503 -10.54681 -10.41489 -10.17327 -9.00693 -8.91091 -8.24873 -6.26407 -1.07554 -0.44515 1.35296 1.36125 1.43981 1.46155 2.05312 2.35651 2.37605 2.97183 3.10030 3.27864 3.48204 3.55499 3.66541 3.86191 3.94066 4.07317 4.16748 4.26073 4.29413 4.31584 4.39806 4.47472 4.50273 4.68193 4.78376 4.81652 4.90773 4.94721 4.99030 4.99959 5.00778 5.04488 5.10629 5.21269 5.29522 5.30667 5.36175 5.39037 5.44371 5.55878 5.59261 5.73299 5.83713 6.06968 6.36891 6.52163 6.62719 6.79986 6.89019 7.36679 8.91823 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.003543 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.522679 B = 7901.363398 C = 8633.742613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.189 4.189 3 C 0.089 3.911 4 N -0.527 5.527 5 C 0.173 3.827 6 C -0.501 4.501 7 H 0.036 0.964 8 C 0.010 3.990 9 N -0.950 5.950 10 Si 0.938 3.062 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.245 1.245 14 C 0.075 3.925 15 C -0.037 4.037 16 C -0.067 4.067 17 C -0.094 4.094 18 C 0.017 3.983 19 C -0.072 4.072 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.207 4.207 23 C 0.359 3.641 24 O -0.563 6.563 25 C 0.046 3.954 26 O -0.497 6.497 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.006 0.994 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.157 0.843 38 H 0.173 0.827 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.046 0.954 46 H 0.135 0.865 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.808 -15.095 -20.952 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.208 4.208 3 C -0.039 4.039 4 N -0.249 5.249 5 C 0.046 3.954 6 C -0.540 4.540 7 H 0.054 0.946 8 C -0.187 4.187 9 N -0.591 5.591 10 Si 0.762 3.238 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.168 1.168 14 C -0.052 4.052 15 C -0.039 4.039 16 C -0.086 4.086 17 C -0.112 4.112 18 C 0.016 3.984 19 C -0.090 4.090 20 C -0.206 4.206 21 C -0.208 4.208 22 C -0.227 4.227 23 C 0.256 3.744 24 O -0.457 6.457 25 C -0.001 4.001 26 O -0.310 6.310 27 H 0.131 0.869 28 H 0.097 0.903 29 H 0.145 0.855 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.024 0.976 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.175 0.825 38 H 0.191 0.809 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.153 0.847 47 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 10.670 -14.598 -20.488 27.326 hybrid contribution -1.068 0.084 1.338 1.714 sum 9.602 -14.515 -19.150 25.876 Atomic orbital electron populations 1.23939 0.96409 1.01782 0.99587 1.23569 0.96735 0.99527 1.00997 1.21250 0.94392 0.94864 0.93364 1.62084 1.13868 1.46203 1.02786 1.19945 0.92390 0.95183 0.87869 1.21172 1.24037 0.99323 1.09456 0.94557 1.25741 0.95167 0.98436 0.99346 1.70047 1.30473 1.28881 1.29730 0.85849 0.77488 0.80949 0.79484 1.19791 1.21156 1.16841 1.21366 0.92792 0.94428 0.96655 1.20590 0.92500 0.94547 0.96216 1.21530 0.99397 0.97270 0.90367 1.21732 0.94090 0.98176 0.97207 1.20584 0.91199 0.89790 0.96805 1.20700 0.98698 0.99903 0.89659 1.21960 0.93990 1.01428 1.03238 1.21967 1.02284 0.95521 1.00983 1.22739 1.03643 1.01937 0.94338 1.18321 0.84035 0.82945 0.89082 1.90871 1.43781 1.32492 1.78538 1.20818 0.96024 0.96802 0.86489 1.84514 1.71671 1.48309 1.26536 0.86914 0.90291 0.85497 0.92907 0.89460 0.97614 0.96232 0.92696 0.91456 0.90479 0.82543 0.80942 0.86632 0.91991 0.93449 0.90227 0.90183 0.92279 0.93457 0.84711 0.73917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.09 14.32 67.78 0.97 -4.12 16 2 C -0.19 -5.17 7.41 25.65 0.19 -4.98 16 3 C 0.09 2.89 5.37 85.56 0.46 3.35 16 4 N -0.53 -19.30 4.65 -909.92 -4.23 -23.53 16 5 C 0.17 7.72 3.67 85.56 0.31 8.03 16 6 C -0.50 -27.88 9.10 25.60 0.23 -27.64 16 7 H 0.04 2.28 7.85 -2.91 -0.02 2.25 16 8 C 0.01 0.57 5.47 84.65 0.46 1.04 16 9 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 10 Si 0.94 43.41 27.54 68.60 1.89 45.30 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.24 -10.34 6.44 99.48 0.64 -9.70 16 14 C 0.07 2.18 4.16 85.56 0.36 2.54 16 15 C -0.04 -0.94 4.75 -19.64 -0.09 -1.03 16 16 C -0.07 -1.12 7.96 22.43 0.18 -0.94 16 17 C -0.09 -1.16 9.26 22.45 0.21 -0.95 16 18 C 0.02 0.26 4.98 -19.74 -0.10 0.16 16 19 C -0.07 -0.67 2.92 -11.54 -0.03 -0.71 16 20 C -0.15 -1.43 8.95 71.98 0.64 -0.79 16 21 C -0.15 -1.58 8.95 71.98 0.64 -0.94 16 22 C -0.21 -4.93 8.07 22.72 0.18 -4.74 16 23 C 0.36 11.85 6.73 23.73 0.16 12.01 16 24 O -0.56 -23.64 16.99 13.73 0.23 -23.41 16 25 C 0.05 1.48 6.70 23.14 0.16 1.64 16 26 O -0.50 -18.53 11.12 -67.63 -0.75 -19.28 16 27 H 0.11 2.60 8.06 -2.91 -0.02 2.58 16 28 H 0.08 2.59 7.84 -2.91 -0.02 2.57 16 29 H 0.13 2.71 6.55 -2.91 -0.02 2.69 16 30 H 0.05 2.12 7.00 -2.38 -0.02 2.11 16 31 H 0.09 2.38 6.30 -2.39 -0.02 2.36 16 32 H 0.01 0.27 5.50 -2.39 -0.01 0.26 16 33 H 0.02 0.89 7.43 -2.39 -0.02 0.88 16 34 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.07 1.61 5.82 -2.39 -0.01 1.60 16 36 H 0.08 2.53 7.08 -2.39 -0.02 2.52 16 37 H 0.16 1.79 7.32 -2.91 -0.02 1.77 16 38 H 0.17 0.66 7.43 -2.91 -0.02 0.64 16 39 H 0.12 0.47 7.42 -2.39 -0.02 0.45 16 40 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.05 0.61 6.91 -2.39 -0.02 0.59 16 42 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.05 0.65 6.91 -2.39 -0.02 0.63 16 46 H 0.14 3.11 5.86 -2.91 -0.02 3.09 16 47 H 0.40 14.51 9.06 -74.06 -0.67 13.83 16 Total: -1.00 -76.36 374.89 2.61 -73.75 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.24 Total: 23.93 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.93 Total: -18.07 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -3.93 Total: -82.22 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -0.52 Total: -42.69 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.89 Total: 45.30 kcal Total: -76.36 2.61 -73.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596202145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.058 kcal (2) G-P(sol) polarization free energy of solvation -76.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds