Wall clock time and date at job start Tue Mar 31 2020 12:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46951 * 2 1 4 4 C 1.50696 * 109.47316 * 120.00006 * 2 1 3 5 5 C 1.38542 * 119.80588 * 300.00354 * 4 2 1 6 6 C 1.37786 * 120.30253 * 180.29645 * 5 4 2 7 7 C 1.39717 * 119.90623 * 359.44961 * 6 5 4 8 8 C 1.47535 * 120.19174 * 180.27423 * 7 6 5 9 9 O 1.21588 * 119.99611 * 219.46830 * 8 7 6 10 10 N 1.34777 * 120.00045 * 39.47342 * 8 7 6 11 11 C 1.46929 * 120.62806 * 3.59579 * 10 8 7 12 12 C 1.53624 * 108.53894 * 126.37256 * 11 10 8 13 13 C 1.53047 * 109.24412 * 54.85353 * 12 11 10 14 14 C 1.53041 * 109.53946 * 298.51206 * 13 12 11 15 15 H 1.09001 * 109.49531 * 301.41461 * 14 13 12 16 16 C 1.50699 * 109.49660 * 181.31315 * 14 13 12 17 17 H 1.07997 * 120.00273 * 0.16076 * 16 14 13 18 18 C 1.37876 * 119.99738 * 180.15935 * 16 14 13 19 19 N 1.31519 * 120.00150 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99944 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47049 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47162 * 120.00381 * 20 18 16 23 23 H 1.48500 * 109.47057 * 240.00114 * 20 18 16 24 24 C 1.46923 * 120.62794 * 183.88014 * 10 8 7 25 25 C 1.40136 * 119.61223 * 0.54652 * 7 6 5 26 26 O 1.35652 * 120.14672 * 179.75305 * 25 7 6 27 27 C 1.38055 * 119.80524 * 120.01691 * 4 2 1 28 28 H 1.09005 * 109.47301 * 299.99917 * 1 2 3 29 29 H 1.09003 * 109.47251 * 60.00016 * 1 2 3 30 30 H 1.09000 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46851 * 240.00242 * 2 1 3 32 32 H 1.08999 * 109.47072 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47067 * 300.00325 * 3 2 1 34 34 H 1.09000 * 109.47146 * 60.00422 * 3 2 1 35 35 H 1.07998 * 119.85375 * 0.02562 * 5 4 2 36 36 H 1.08000 * 120.05144 * 179.70286 * 6 5 4 37 37 H 1.08991 * 109.58670 * 246.19999 * 11 10 8 38 38 H 1.08999 * 109.58473 * 6.63512 * 11 10 8 39 39 H 1.09008 * 109.63671 * 294.86775 * 12 11 10 40 40 H 1.08994 * 109.46037 * 174.73676 * 12 11 10 41 41 H 1.08999 * 109.46189 * 178.48806 * 13 12 11 42 42 H 1.09001 * 109.44434 * 58.52096 * 13 12 11 43 43 H 0.97005 * 119.99935 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.58939 * 353.37347 * 24 10 8 45 45 H 1.09005 * 109.58554 * 113.79761 * 24 10 8 46 46 H 0.96699 * 114.00121 * 269.97429 * 26 25 7 47 47 H 1.08010 * 119.95773 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6952 -0.2336 2.4868 6 6 2.1539 -0.8716 3.6186 7 6 2.9533 -2.0113 3.5002 8 6 3.4429 -2.7029 4.7080 9 8 4.5737 -3.1488 4.7368 10 7 2.6367 -2.8404 5.7792 11 6 1.2431 -2.3772 5.7317 12 6 0.3274 -3.5407 6.1414 13 6 0.7668 -4.0714 7.5080 14 6 2.2011 -4.5972 7.4158 15 1 2.2521 -5.3852 6.6644 16 6 2.6215 -5.1490 8.7537 17 1 1.9337 -5.1294 9.5862 18 6 3.8841 -5.6788 8.9150 19 7 4.7218 -5.7022 7.9014 20 14 4.4049 -6.3633 10.5731 21 1 3.2881 -6.2192 11.5411 22 1 4.7531 -7.7997 10.4284 23 1 5.5881 -5.6147 11.0682 24 6 3.1365 -3.4508 7.0187 25 6 3.2921 -2.4903 2.2276 26 8 4.0718 -3.5931 2.1001 27 6 2.8261 -1.8323 1.0990 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.0735 0.6446 2.5795 36 1 1.8925 -0.4937 4.5960 37 1 1.1112 -1.5443 6.4222 38 1 0.9988 -2.0572 4.7188 39 1 0.3961 -4.3387 5.4020 40 1 -0.7022 -3.1884 6.2019 41 1 0.1027 -4.8796 7.8143 42 1 0.7216 -3.2664 8.2415 43 1 5.6103 -6.0746 8.0150 44 1 4.1417 -3.8393 6.8553 45 1 3.1558 -2.7035 7.8121 46 1 5.0191 -3.4028 2.0627 47 1 3.0852 -2.1976 0.1162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:19 Heat of formation + Delta-G solvation = -65.357527 kcal Electronic energy + Delta-G solvation = -27260.737108 eV Core-core repulsion = 23600.983273 eV Total energy + Delta-G solvation = -3659.753835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.48498 -38.78919 -37.38276 -36.39721 -35.01535 -33.29965 -31.77013 -30.72105 -29.71124 -29.28313 -27.41940 -25.24586 -25.03035 -23.34072 -22.82418 -21.70907 -20.62922 -19.95945 -18.65451 -17.48946 -17.02647 -16.34885 -16.11477 -15.48130 -15.25236 -14.81724 -14.51371 -14.27986 -14.09894 -13.97265 -13.66525 -13.57922 -13.36709 -12.96610 -12.61293 -12.58566 -12.44074 -12.24633 -11.93356 -11.90229 -11.80013 -11.44624 -11.35720 -11.00265 -10.97513 -10.81847 -10.52110 -10.40192 -10.35457 -10.20457 -9.85544 -9.29636 -9.10328 -8.92344 -8.73292 -8.55218 -8.40732 -7.69513 -5.96440 -4.05641 0.95110 1.23231 3.17988 3.31425 3.39777 3.42898 3.60780 3.90780 4.20818 4.45004 4.48283 4.57990 4.88120 4.90040 4.91482 5.08455 5.19391 5.29125 5.33104 5.34113 5.40285 5.53263 5.54451 5.56220 5.66691 5.69669 5.78656 5.85646 5.92854 5.95686 6.00376 6.18899 6.23191 6.31001 6.34325 6.42745 6.63692 6.70045 6.71894 6.88612 7.00995 7.18233 7.32035 7.67649 7.81743 7.90992 8.03240 8.28315 8.41829 8.89246 8.99357 9.59852 11.08575 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024600 B = 0.003263 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.947180 B = 8579.879489 C = 9242.670653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.048 4.048 5 C -0.136 4.136 6 C -0.074 4.074 7 C -0.152 4.152 8 C 0.553 3.447 9 O -0.529 6.529 10 N -0.598 5.598 11 C 0.097 3.903 12 C -0.134 4.134 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.113 3.887 25 C 0.162 3.838 26 O -0.486 6.486 27 C -0.154 4.154 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.263 0.737 44 H 0.123 0.877 45 H 0.042 0.958 46 H 0.399 0.601 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.892 14.313 -15.535 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.202 4.202 4 C -0.049 4.049 5 C -0.154 4.154 6 C -0.093 4.093 7 C -0.156 4.156 8 C 0.340 3.660 9 O -0.407 6.407 10 N -0.330 5.330 11 C -0.027 4.027 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.516 5.516 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.006 4.006 25 C 0.116 3.884 26 O -0.297 6.297 27 C -0.173 4.173 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.060 0.940 46 H 0.257 0.743 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.613 13.699 -15.525 22.060 hybrid contribution 0.702 -0.228 0.948 1.202 sum -6.911 13.471 -14.577 21.017 Atomic orbital electron populations 1.21864 0.94055 1.02269 1.02008 1.20169 0.96171 0.96098 0.95211 1.21862 1.01353 0.94931 1.02014 1.19814 0.95726 0.94453 0.94859 1.20853 1.02115 1.00936 0.91465 1.21374 0.94694 0.93807 0.99392 1.20646 1.02606 0.98053 0.94275 1.18019 0.85671 0.79944 0.82399 1.90772 1.19173 1.48785 1.81964 1.48393 1.10694 1.59444 1.14513 1.22128 0.82336 0.96875 1.01312 1.22028 0.97517 0.97934 0.99722 1.21631 0.99715 0.99465 0.93993 1.18968 0.88741 0.93110 0.97123 0.95288 1.21112 0.98940 1.39806 0.96037 0.92328 1.25069 0.96794 0.95630 0.96613 1.69913 1.07004 1.44827 1.29879 0.86544 0.78533 0.78751 0.84223 1.19813 1.21016 1.21002 1.22302 1.03542 0.94306 0.80497 1.18424 0.93445 0.86088 0.90451 1.84693 1.21614 1.28144 1.95292 1.21255 1.01601 0.96096 0.98305 0.92238 0.92351 0.92347 0.90345 0.92443 0.92349 0.92260 0.85535 0.84703 0.92011 0.90060 0.92142 0.92283 0.93042 0.93218 0.92731 0.85870 0.93953 0.74318 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.00 37.16 0.33 -0.66 16 2 C -0.06 -0.45 3.09 -91.77 -0.28 -0.73 16 3 C -0.14 -0.97 9.01 37.16 0.33 -0.63 16 4 C -0.05 -0.50 4.79 -104.58 -0.50 -1.00 16 5 C -0.14 -1.43 8.68 -39.63 -0.34 -1.77 16 6 C -0.07 -0.96 7.34 -39.19 -0.29 -1.25 16 7 C -0.15 -2.52 5.22 -104.84 -0.55 -3.07 16 8 C 0.55 11.74 7.17 -12.47 -0.09 11.65 16 9 O -0.53 -13.27 15.52 -10.89 -0.17 -13.44 16 10 N -0.60 -12.48 2.97 -173.73 -0.52 -13.00 16 11 C 0.10 1.58 4.91 -3.48 -0.02 1.56 16 12 C -0.13 -2.27 6.10 -26.38 -0.16 -2.43 16 13 C -0.11 -2.25 5.10 -26.69 -0.14 -2.39 16 14 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 15 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 16 C -0.52 -14.31 8.56 -34.44 -0.29 -14.60 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.88 -26.06 11.39 55.43 0.63 -25.43 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 C 0.11 2.81 5.40 -3.71 -0.02 2.79 16 25 C 0.16 2.50 6.68 -38.70 -0.26 2.24 16 26 O -0.49 -8.01 12.25 -34.84 -0.43 -8.44 16 27 C -0.15 -1.86 9.59 -39.48 -0.38 -2.24 16 28 H 0.06 0.39 7.37 -51.93 -0.38 0.01 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.39 7.37 -51.93 -0.38 0.00 16 35 H 0.13 1.02 7.07 -52.49 -0.37 0.64 16 36 H 0.14 1.60 6.38 -52.49 -0.33 1.26 16 37 H 0.06 0.90 8.12 -51.93 -0.42 0.47 16 38 H 0.08 1.16 4.50 -51.93 -0.23 0.92 16 39 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.12 3.56 5.11 -51.93 -0.27 3.30 16 45 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.40 5.19 9.06 45.56 0.41 5.60 16 47 H 0.13 1.32 7.93 -52.48 -0.42 0.91 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -33.16 369.43 -9.46 -42.61 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.57 Total: 5.73 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -2.95 Total: -10.09 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.12 Total: -38.42 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.60 Total: -21.88 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.16 -9.46 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.744 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds