Wall clock time and date at job start Tue Mar 31 2020 12:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46951 * 2 1 4 4 C 1.50696 * 109.47316 * 120.00006 * 2 1 3 5 5 C 1.38542 * 119.80588 * 300.00354 * 4 2 1 6 6 C 1.37786 * 120.30253 * 180.29645 * 5 4 2 7 7 C 1.39717 * 119.90623 * 359.44961 * 6 5 4 8 8 C 1.47535 * 120.19174 * 180.27423 * 7 6 5 9 9 O 1.21588 * 119.99611 * 219.46830 * 8 7 6 10 10 N 1.34777 * 120.00045 * 39.47342 * 8 7 6 11 11 C 1.46929 * 120.62806 * 3.59579 * 10 8 7 12 12 C 1.53624 * 108.53894 * 126.37256 * 11 10 8 13 13 C 1.53047 * 109.24412 * 54.85353 * 12 11 10 14 14 C 1.53041 * 109.53946 * 298.51206 * 13 12 11 15 15 H 1.09001 * 109.49531 * 301.41461 * 14 13 12 16 16 C 1.50699 * 109.49660 * 181.31315 * 14 13 12 17 17 H 1.07997 * 120.00273 * 0.16076 * 16 14 13 18 18 C 1.37876 * 119.99738 * 180.15935 * 16 14 13 19 19 N 1.31519 * 120.00150 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99944 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47049 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47162 * 120.00381 * 20 18 16 23 23 H 1.48500 * 109.47057 * 240.00114 * 20 18 16 24 24 C 1.46923 * 120.62794 * 183.88014 * 10 8 7 25 25 C 1.40136 * 119.61223 * 0.54652 * 7 6 5 26 26 O 1.35652 * 120.14672 * 179.75305 * 25 7 6 27 27 C 1.38055 * 119.80524 * 120.01691 * 4 2 1 28 28 H 1.09005 * 109.47301 * 299.99917 * 1 2 3 29 29 H 1.09003 * 109.47251 * 60.00016 * 1 2 3 30 30 H 1.09000 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46851 * 240.00242 * 2 1 3 32 32 H 1.08999 * 109.47072 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47067 * 300.00325 * 3 2 1 34 34 H 1.09000 * 109.47146 * 60.00422 * 3 2 1 35 35 H 1.07998 * 119.85375 * 0.02562 * 5 4 2 36 36 H 1.08000 * 120.05144 * 179.70286 * 6 5 4 37 37 H 1.08991 * 109.58670 * 246.19999 * 11 10 8 38 38 H 1.08999 * 109.58473 * 6.63512 * 11 10 8 39 39 H 1.09008 * 109.63671 * 294.86775 * 12 11 10 40 40 H 1.08994 * 109.46037 * 174.73676 * 12 11 10 41 41 H 1.08999 * 109.46189 * 178.48806 * 13 12 11 42 42 H 1.09001 * 109.44434 * 58.52096 * 13 12 11 43 43 H 0.97005 * 119.99935 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.58939 * 353.37347 * 24 10 8 45 45 H 1.09005 * 109.58554 * 113.79761 * 24 10 8 46 46 H 0.96699 * 114.00121 * 269.97429 * 26 25 7 47 47 H 1.08010 * 119.95773 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6952 -0.2336 2.4868 6 6 2.1539 -0.8716 3.6186 7 6 2.9533 -2.0113 3.5002 8 6 3.4429 -2.7029 4.7080 9 8 4.5737 -3.1488 4.7368 10 7 2.6367 -2.8404 5.7792 11 6 1.2431 -2.3772 5.7317 12 6 0.3274 -3.5407 6.1414 13 6 0.7668 -4.0714 7.5080 14 6 2.2011 -4.5972 7.4158 15 1 2.2521 -5.3852 6.6644 16 6 2.6215 -5.1490 8.7537 17 1 1.9337 -5.1294 9.5862 18 6 3.8841 -5.6788 8.9150 19 7 4.7218 -5.7022 7.9014 20 14 4.4049 -6.3633 10.5731 21 1 3.2881 -6.2192 11.5411 22 1 4.7531 -7.7997 10.4284 23 1 5.5881 -5.6147 11.0682 24 6 3.1365 -3.4508 7.0187 25 6 3.2921 -2.4903 2.2276 26 8 4.0718 -3.5931 2.1001 27 6 2.8261 -1.8323 1.0990 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.0735 0.6446 2.5795 36 1 1.8925 -0.4937 4.5960 37 1 1.1112 -1.5443 6.4222 38 1 0.9988 -2.0572 4.7188 39 1 0.3961 -4.3387 5.4020 40 1 -0.7022 -3.1884 6.2019 41 1 0.1027 -4.8796 7.8143 42 1 0.7216 -3.2664 8.2415 43 1 5.6103 -6.0746 8.0150 44 1 4.1417 -3.8393 6.8553 45 1 3.1558 -2.7035 7.8121 46 1 5.0191 -3.4028 2.0627 47 1 3.0852 -2.1976 0.1162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:18 Heat of formation + Delta-G solvation = -85.987903 kcal Electronic energy + Delta-G solvation = -27261.631708 eV Core-core repulsion = 23600.983273 eV Total energy + Delta-G solvation = -3660.648435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74460 -40.15224 -38.56422 -37.98048 -36.02154 -35.12159 -33.48143 -31.98353 -31.18136 -30.45760 -27.89305 -27.13836 -26.56467 -24.51288 -23.97709 -23.26404 -21.82031 -21.20427 -20.24383 -18.70649 -18.57364 -17.99558 -17.44324 -16.77083 -16.52435 -16.49251 -15.92419 -15.65259 -15.37341 -15.04577 -14.80410 -14.65538 -14.55402 -14.37197 -14.25668 -13.88759 -13.65811 -13.48687 -13.18000 -12.93863 -12.91836 -12.77045 -12.55911 -12.30444 -12.24344 -12.22140 -11.98274 -11.79499 -11.65069 -11.61974 -11.45921 -11.13331 -10.97786 -10.64892 -10.54181 -9.81848 -9.63928 -9.38054 -8.11971 -6.30268 -0.13218 0.25489 1.38504 1.39422 1.52206 1.79452 2.17420 2.40892 2.64196 3.15497 3.20136 3.50551 3.78771 3.79644 4.03534 4.12283 4.14875 4.24179 4.31881 4.37187 4.42004 4.48453 4.54638 4.70162 4.76969 4.77472 4.81808 4.90794 4.91267 4.99927 5.05570 5.08455 5.16802 5.22035 5.23669 5.26029 5.29307 5.36696 5.39558 5.48105 5.53249 5.62294 5.62370 5.80179 5.87149 5.97924 6.30439 6.62610 6.71176 6.83239 7.27629 7.40377 8.91536 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024600 B = 0.003263 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.947180 B = 8579.879489 C = 9242.670653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.034 4.034 5 C -0.122 4.122 6 C -0.070 4.070 7 C -0.182 4.182 8 C 0.543 3.457 9 O -0.587 6.587 10 N -0.604 5.604 11 C 0.093 3.907 12 C -0.128 4.128 13 C -0.104 4.104 14 C 0.038 3.962 15 H -0.022 1.022 16 C -0.535 4.535 17 H 0.065 0.935 18 C 0.006 3.994 19 N -0.916 5.916 20 Si 0.961 3.039 21 H -0.258 1.258 22 H -0.284 1.284 23 H -0.281 1.281 24 C 0.126 3.874 25 C 0.139 3.861 26 O -0.511 6.511 27 C -0.152 4.152 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.040 0.960 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.259 0.741 44 H 0.075 0.925 45 H 0.042 0.958 46 H 0.406 0.594 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.996 17.303 -16.386 26.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.034 4.034 5 C -0.139 4.139 6 C -0.089 4.089 7 C -0.185 4.185 8 C 0.332 3.668 9 O -0.469 6.469 10 N -0.334 5.334 11 C -0.028 4.028 12 C -0.166 4.166 13 C -0.142 4.142 14 C 0.019 3.981 15 H -0.004 1.004 16 C -0.573 4.573 17 H 0.083 0.917 18 C -0.193 4.193 19 N -0.555 5.555 20 Si 0.786 3.214 21 H -0.182 1.182 22 H -0.210 1.210 23 H -0.207 1.207 24 C 0.004 3.996 25 C 0.093 3.907 26 O -0.324 6.324 27 C -0.170 4.170 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.182 0.818 36 H 0.167 0.833 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.059 0.941 40 H 0.125 0.875 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.265 0.735 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.775 16.713 -16.380 25.763 hybrid contribution 1.635 -1.112 1.101 2.263 sum -9.139 15.602 -15.280 23.673 Atomic orbital electron populations 1.21875 0.92959 1.02098 1.03223 1.20254 0.96918 0.96494 0.93832 1.21871 1.00934 0.94130 1.03166 1.20252 0.93644 0.93198 0.96320 1.21229 1.01144 1.01211 0.90362 1.21517 0.93821 0.92388 1.01142 1.20386 1.05805 1.00097 0.92240 1.18860 0.84995 0.79311 0.83596 1.90720 1.21684 1.51370 1.83084 1.48416 1.12753 1.59054 1.13210 1.22504 0.79179 0.97310 1.03850 1.22008 1.00218 0.97615 0.96728 1.21518 0.96050 0.99861 0.96754 1.18900 0.92424 0.92054 0.94728 1.00353 1.21544 0.99096 1.39581 0.97077 0.91730 1.25963 0.96955 0.96080 1.00275 1.70130 1.07171 1.45928 1.32279 0.85459 0.78378 0.77718 0.79831 1.18213 1.20961 1.20729 1.21716 1.01286 0.94204 0.82383 1.18769 0.94117 0.86530 0.91283 1.84647 1.22529 1.29748 1.95436 1.21428 1.01460 0.96331 0.97820 0.91474 0.90818 0.93216 0.89729 0.93181 0.90807 0.91609 0.81812 0.83290 0.89069 0.87335 0.94123 0.87450 0.92995 0.91851 0.93188 0.90669 0.93969 0.73530 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.00 71.98 0.65 -0.70 16 2 C -0.06 -0.64 3.09 -11.54 -0.04 -0.67 16 3 C -0.14 -1.32 9.01 71.98 0.65 -0.67 16 4 C -0.03 -0.59 4.79 -19.84 -0.09 -0.68 16 5 C -0.12 -2.06 8.68 22.24 0.19 -1.87 16 6 C -0.07 -1.65 7.34 22.52 0.17 -1.48 16 7 C -0.18 -6.07 5.22 -20.01 -0.10 -6.18 16 8 C 0.54 24.31 7.17 86.70 0.62 24.93 16 9 O -0.59 -32.05 15.52 11.48 0.18 -31.87 16 10 N -0.60 -25.93 2.97 -821.83 -2.44 -28.37 16 11 C 0.09 2.84 4.91 86.51 0.42 3.26 16 12 C -0.13 -4.08 6.10 30.82 0.19 -3.90 16 13 C -0.10 -4.19 5.10 30.62 0.16 -4.03 16 14 C 0.04 2.02 2.25 -11.46 -0.03 1.99 16 15 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 16 C -0.53 -30.31 8.56 25.60 0.22 -30.09 16 17 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 18 C 0.01 0.37 5.30 84.65 0.45 0.82 16 19 N -0.92 -57.75 11.39 21.45 0.24 -57.51 16 20 Si 0.96 45.35 29.54 68.60 2.03 47.37 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 24 C 0.13 6.60 5.40 86.36 0.47 7.06 16 25 C 0.14 4.36 6.68 22.84 0.15 4.51 16 26 O -0.51 -18.09 12.25 -74.20 -0.91 -19.00 16 27 C -0.15 -3.44 9.59 22.34 0.21 -3.22 16 28 H 0.07 0.54 7.37 -2.38 -0.02 0.52 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.90 7.86 -2.39 -0.02 0.88 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.53 7.37 -2.39 -0.02 0.52 16 35 H 0.16 1.63 7.07 -2.91 -0.02 1.61 16 36 H 0.15 3.02 6.38 -2.91 -0.02 3.01 16 37 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 38 H 0.11 2.77 4.50 -2.39 -0.01 2.76 16 39 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 44 H 0.07 4.71 5.11 -2.39 -0.01 4.70 16 45 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.41 11.89 9.06 -74.06 -0.67 11.22 16 47 H 0.15 2.75 7.93 -2.91 -0.02 2.73 16 Total: -1.00 -80.04 369.43 3.69 -76.35 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.30 Total: 23.94 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 4.29 Total: -10.92 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -2.19 Total: -85.88 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.73 Total: -50.87 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -80.04 3.69 -76.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.640 kcal (2) G-P(sol) polarization free energy of solvation -80.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds