Wall clock time and date at job start Tue Mar 31 2020 12:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47235 * 2 1 4 4 C 1.50708 * 109.47027 * 120.00201 * 2 1 3 5 5 C 1.38544 * 119.79994 * 299.97773 * 4 2 1 6 6 C 1.37793 * 120.30011 * 179.69761 * 5 4 2 7 7 C 1.39708 * 119.90223 * 0.59994 * 6 5 4 8 8 C 1.47535 * 120.18921 * 179.69765 * 7 6 5 9 9 O 1.21594 * 120.00212 * 233.56488 * 8 7 6 10 10 N 1.34776 * 119.99926 * 53.56971 * 8 7 6 11 11 C 1.46931 * 120.62884 * 176.14474 * 10 8 7 12 12 C 1.53192 * 108.77242 * 233.60509 * 11 10 8 13 13 C 1.53042 * 109.31665 * 305.36552 * 12 11 10 14 14 C 1.53039 * 109.53378 * 61.36541 * 13 12 11 15 15 H 1.09002 * 109.49722 * 58.61922 * 14 13 12 16 16 C 1.50706 * 109.49313 * 178.68524 * 14 13 12 17 17 H 1.07998 * 120.00296 * 5.74715 * 16 14 13 18 18 C 1.37881 * 119.99639 * 185.47884 * 16 14 13 19 19 N 1.31512 * 119.99884 * 356.43754 * 18 16 14 20 20 Si 1.86795 * 119.99781 * 176.43390 * 18 16 14 21 21 H 1.48498 * 109.47134 * 94.99306 * 20 18 16 22 22 H 1.48504 * 109.47012 * 214.99559 * 20 18 16 23 23 H 1.48500 * 109.47369 * 334.99086 * 20 18 16 24 24 C 1.46931 * 120.60656 * 356.16418 * 10 8 7 25 25 C 1.40136 * 119.61938 * 359.42592 * 7 6 5 26 26 O 1.35654 * 120.15228 * 180.29791 * 25 7 6 27 27 C 1.38051 * 119.80592 * 119.99954 * 4 2 1 28 28 H 1.08998 * 109.47135 * 300.00216 * 1 2 3 29 29 H 1.09002 * 109.47022 * 60.00291 * 1 2 3 30 30 H 1.09004 * 109.47127 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47135 * 239.99784 * 2 1 3 32 32 H 1.08994 * 109.47031 * 299.99525 * 3 2 1 33 33 H 1.09004 * 109.46836 * 59.99839 * 3 2 1 34 34 H 1.08999 * 109.47002 * 179.97438 * 3 2 1 35 35 H 1.08001 * 119.85369 * 359.97438 * 5 4 2 36 36 H 1.07997 * 120.04973 * 180.32589 * 6 5 4 37 37 H 1.08999 * 109.58557 * 113.82236 * 11 10 8 38 38 H 1.08995 * 109.58795 * 353.39341 * 11 10 8 39 39 H 1.09007 * 109.49470 * 185.41207 * 12 11 10 40 40 H 1.08997 * 109.52391 * 65.33674 * 12 11 10 41 41 H 1.09000 * 109.45979 * 301.34871 * 13 12 11 42 42 H 1.08996 * 109.45901 * 181.38271 * 13 12 11 43 43 H 0.97002 * 119.99858 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.61455 * 6.62113 * 24 10 8 45 45 H 1.08996 * 109.56318 * 246.19716 * 24 10 8 46 46 H 0.96696 * 114.00438 * 89.99870 * 26 25 7 47 47 H 1.08001 * 119.95893 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6955 -0.2333 2.4868 6 6 2.1439 -0.8785 3.6188 7 6 2.9524 -2.0118 3.5004 8 6 3.4416 -2.7036 4.7082 9 8 4.6310 -2.9131 4.8491 10 7 2.5700 -3.1034 5.6553 11 6 3.0314 -3.8672 6.8226 12 6 2.2035 -5.1517 6.9298 13 6 0.7158 -4.7940 6.9607 14 6 0.3340 -4.0803 5.6619 15 1 0.5544 -4.7274 4.8128 16 6 -1.1379 -3.7573 5.6794 17 1 -1.7222 -3.9486 6.5673 18 6 -1.7374 -3.2123 4.5638 19 7 -1.0121 -2.9093 3.5094 20 14 -3.5797 -2.9043 4.5500 21 1 -3.8496 -1.4986 4.9455 22 1 -4.1117 -3.1453 3.1846 23 1 -4.2426 -3.8243 5.5089 24 6 1.1406 -2.7837 5.5395 25 6 3.2912 -2.4909 2.2278 26 8 4.0706 -3.5939 2.1003 27 6 2.8257 -1.8326 1.0992 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.0749 0.6457 2.5794 36 1 1.8745 -0.5061 4.5961 37 1 2.8989 -3.2707 7.7252 38 1 4.0845 -4.1203 6.7007 39 1 2.4696 -5.6807 7.8450 40 1 2.4067 -5.7889 6.0692 41 1 0.5177 -4.1372 7.8077 42 1 0.1254 -5.7047 7.0617 43 1 -1.4338 -2.5255 2.7247 44 1 0.9461 -2.3224 4.5712 45 1 0.8540 -2.0984 6.3371 46 1 3.5751 -4.4235 2.0632 47 1 3.0847 -2.1980 0.1164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:24 Heat of formation + Delta-G solvation = -71.821505 kcal Electronic energy + Delta-G solvation = -28104.120414 eV Core-core repulsion = 24444.086279 eV Total energy + Delta-G solvation = -3660.034134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.20702 -38.70772 -37.11616 -36.48728 -34.62321 -33.18371 -32.07603 -30.36064 -29.70653 -28.98746 -27.05134 -25.20164 -24.90447 -23.35942 -22.43159 -21.70852 -20.39808 -19.78548 -18.67251 -17.24971 -16.85367 -16.24199 -16.00933 -15.48233 -15.19322 -14.65124 -14.39435 -14.12462 -13.85610 -13.79378 -13.56492 -13.32618 -13.16092 -12.87973 -12.73961 -12.26342 -12.20776 -12.09533 -11.93012 -11.71208 -11.55814 -11.11399 -11.08619 -11.03159 -10.86429 -10.62497 -10.60660 -10.42079 -10.28422 -10.20457 -9.96842 -9.41688 -9.14916 -8.96976 -8.59084 -8.31755 -8.16052 -7.77826 -6.13637 -4.18677 1.40100 1.69267 3.20684 3.25133 3.29726 3.33347 3.68269 4.04424 4.33257 4.51245 4.84552 4.94732 5.10972 5.22691 5.27947 5.28247 5.47779 5.54186 5.59681 5.61932 5.68867 5.73783 5.77248 5.89110 5.94278 6.01784 6.07801 6.12916 6.22858 6.26320 6.29418 6.35221 6.40561 6.47229 6.60307 6.64094 6.68810 6.78626 6.86001 6.89636 6.92012 7.10950 7.27336 7.47032 7.70312 7.88430 7.99085 8.11562 8.32062 8.80261 8.86185 9.46578 10.92977 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.006668 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.268264 B = 4198.034588 C = 6514.001202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.044 4.044 5 C -0.119 4.119 6 C -0.051 4.051 7 C -0.139 4.139 8 C 0.559 3.441 9 O -0.552 6.552 10 N -0.601 5.601 11 C 0.114 3.886 12 C -0.132 4.132 13 C -0.111 4.111 14 C 0.040 3.960 15 H 0.031 0.969 16 C -0.517 4.517 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.881 5.881 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.095 3.905 25 C 0.154 3.846 26 O -0.491 6.491 27 C -0.150 4.150 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.262 0.738 44 H 0.123 0.877 45 H 0.045 0.955 46 H 0.389 0.611 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.730 4.610 -4.409 7.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.044 4.044 5 C -0.137 4.137 6 C -0.069 4.069 7 C -0.143 4.143 8 C 0.347 3.653 9 O -0.432 6.432 10 N -0.332 5.332 11 C -0.009 4.009 12 C -0.171 4.171 13 C -0.149 4.149 14 C 0.021 3.979 15 H 0.049 0.951 16 C -0.556 4.556 17 H 0.076 0.924 18 C -0.136 4.136 19 N -0.518 5.518 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.025 4.025 25 C 0.108 3.892 26 O -0.301 6.301 27 C -0.169 4.169 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.141 0.859 45 H 0.063 0.937 46 H 0.245 0.755 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.785 4.969 -4.491 8.232 hybrid contribution -1.650 -0.286 0.036 1.675 sum 3.135 4.683 -4.455 7.184 Atomic orbital electron populations 1.21847 0.93905 1.02699 1.01643 1.20134 0.96307 0.95766 0.95198 1.21861 1.01112 0.95266 1.01840 1.19693 0.95648 0.94413 0.94696 1.20720 1.00863 1.00648 0.91449 1.21017 0.93324 0.93480 0.99117 1.20100 1.01578 0.99305 0.93291 1.18212 0.85610 0.78754 0.82676 1.90715 1.16031 1.57545 1.78878 1.48469 1.10188 1.53212 1.21341 1.21483 0.99025 0.92541 0.87806 1.21941 0.97477 0.96639 1.01013 1.21639 0.92879 1.00095 1.00296 1.18964 0.94414 0.91998 0.92504 0.95060 1.21092 0.93043 1.42228 0.99219 0.92436 1.24972 0.97848 0.95212 0.95596 1.69866 1.35050 1.42445 1.04479 0.86638 0.85878 0.78468 0.77402 1.20769 1.21189 1.19945 1.22695 0.75123 1.00591 1.04127 1.18220 0.91112 0.89303 0.90551 1.84743 1.34348 1.15446 1.95516 1.21070 1.00218 0.97714 0.97848 0.92169 0.92844 0.91947 0.90664 0.92575 0.92311 0.92617 0.85927 0.85562 0.92292 0.90149 0.92200 0.92267 0.93249 0.92974 0.92800 0.85931 0.93686 0.75466 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.00 37.16 0.33 -1.40 16 2 C -0.06 -0.67 3.09 -91.77 -0.28 -0.95 16 3 C -0.14 -1.48 9.00 37.16 0.33 -1.14 16 4 C -0.04 -0.66 4.79 -104.57 -0.50 -1.16 16 5 C -0.12 -1.89 8.68 -39.63 -0.34 -2.24 16 6 C -0.05 -0.92 7.41 -39.20 -0.29 -1.21 16 7 C -0.14 -2.76 4.91 -104.85 -0.51 -3.27 16 8 C 0.56 11.94 6.86 -12.47 -0.09 11.86 16 9 O -0.55 -13.01 16.17 1.74 0.03 -12.99 16 10 N -0.60 -12.22 2.97 -173.99 -0.52 -12.73 16 11 C 0.11 2.06 6.42 -3.71 -0.02 2.03 16 12 C -0.13 -2.27 6.08 -26.61 -0.16 -2.44 16 13 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 14 C 0.04 0.93 2.18 -91.65 -0.20 0.73 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -12.98 8.49 -34.44 -0.29 -13.27 16 17 H 0.06 1.45 7.75 -52.49 -0.41 1.04 16 18 C 0.07 1.66 5.36 -17.82 -0.10 1.57 16 19 N -0.88 -22.23 11.67 55.43 0.65 -21.58 16 20 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.10 2.07 4.54 -3.71 -0.02 2.05 16 25 C 0.15 2.85 6.70 -38.70 -0.26 2.59 16 26 O -0.49 -8.76 12.69 -22.21 -0.28 -9.05 16 27 C -0.15 -2.41 9.59 -39.48 -0.38 -2.79 16 28 H 0.06 0.75 7.37 -51.93 -0.38 0.37 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.83 7.86 -51.93 -0.41 0.42 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.60 7.37 -51.93 -0.38 0.22 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.12 1.71 7.07 -52.49 -0.37 1.34 16 36 H 0.13 2.21 7.33 -52.49 -0.38 1.82 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 44 H 0.12 2.77 3.12 -51.93 -0.16 2.61 16 45 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.39 5.53 9.06 45.56 0.41 5.95 16 47 H 0.13 1.73 7.93 -52.49 -0.42 1.32 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -29.15 372.34 -9.10 -38.25 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.65 Total: 9.09 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -2.91 Total: -11.35 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.13 Total: -34.32 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.25 Total: -22.03 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.15 -9.10 -38.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.567 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds